TCONS_00011593-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011593-protein
Unique NameTCONS_00011593-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length133

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011593-protein ID=TCONS_00011593-protein|Name=TCONS_00011593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MGFTKFVEAGRVTLVNGGKYDGKLVVIANVVNQSRVLADNPVDGVPRQLF
SFAQLTLTSLKINIPPGARSGAIRKQLEKDDIKGKWGATAYAKKLALREA
KRNMNDFDRYKSKVAKQVRNRKVKAIVKTLKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006493XLOC_006493Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011593TCONS_00011593Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002784Ribosomal_L14e_dom
IPR014722Rib_L2_dom2
IPR008991Translation_prot_SH3-like
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002784Ribosomal protein L14e domainPFAMPF01929Ribosomal_L14ecoord: 46..120
e-value: 2.8E-26
score: 91.7
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 4..88
e-value: 1.2E-16
score: 60.5
NoneNo IPR availableCDDcd06088KOW_RPL14coord: 7..81
e-value: 4.45053E-13
score: 59.4114
IPR008991Translation protein SH3-like domainSUPERFAMILY50104Translation proteins SH3-like domaincoord: 5..96

Blast
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BLAST of TCONS_00011593-protein vs. Swiss-Prot (Human)
Match: RL14 (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 1.075e-31
Identity = 59/132 (44.70%), Postives = 78/132 (59.09%), Query Frame = 0 
Query:    1 MGFTKFVEAGRVTLVNGGKYDGKLVVIANVVNQSRVLADNPVDGVPRQLFSFAQLTLTSLKINIPPGARSGAIRKQLEKDDIKGKWGATAYAKKLALREAKRNMNDFDRYKSKVAKQVRNRKVKAIVKTLKK 132
            M F +FVE GRV  V+ G + GKLV I +V++Q+R L D P   V RQ   F  + LT   +  P  A    +R+  +K DI  KW AT +AKK+  RE K  M DFDR+K   AK++RNR +K  VK L+K
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132
The following BLAST results are available for this feature:
BLAST of TCONS_00011593-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL141.075e-3144.7060S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
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