TCONS_00011346-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011346-protein
Unique Name	TCONS_00011346-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	446

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011346-protein ID=TCONS_00011346-protein|Name=TCONS_00011346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
YVSTIRSLRELDPSGIILENVCSPLREYLRSRDDTIKCIITCLTDQGSGP
DLSEELLGFGDDFDTTKSCDVESDGEEWYPDPVDAVTSDAQTKSQRRADI
LNILVNIYGSQDTFVSQYRILLADRILNNYSYDVTNERRYIELLKRRFGE
NHMHYCDIMLKDIQDSHRINRRITTEMKKKQKGGEQADQTKENKEKKDKG
EEVSVSSKTGPETPDKIDFNAFILSSAFWPTLANESVDPPSQVESLMSDY
NDLFKQSKGMRSLEWLNNLGSVEVEVELDEGVTKNFNVTPAQATLLVKFQ
EKDDWTLNDLATSLNINKSSLRNRIAFWIGQGVIIEKSNDHFTSAQTFQS
SQLNNSIYESDDECGATSAQNQKDQELQVYWSYVVGMLTNIGSLPLDRIH
AMLKMFASTEASTQCTLDDVKSFLQAKVNNGELVYVGGVYKLPKAN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006361	XLOC_006361	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011346	TCONS_00011346	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016158	Cullin_homology
IPR014786	APC_su2_C
IPR011991	WHTH_DNA-bd_dom
IPR001373	Cullin_N

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0031625	ubiquitin protein ligase binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0031625	ubiquitin protein ligase binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016158	Cullin homology	SMART	SM00182	cul_2	coord: 99..278 e-value: 8.7E-7 score: 13.0
IPR016158	Cullin homology	PROSITE	PS50069	CULLIN_2	coord: 52..329 score: 26.159
IPR016158	Cullin homology	SUPERFAMILY	75632	Cullin homology domain	coord: 206..351 coord: 77..174
IPR014786	Anaphase-promoting complex subunit 2, C-terminal	SMART	SM01013	APC2_2	coord: 383..442 e-value: 1.7E-27 score: 107.3
IPR014786	Anaphase-promoting complex subunit 2, C-terminal	PFAM	PF08672	ANAPC2	coord: 383..442 e-value: 7.6E-24 score: 83.9
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 284..344 e-value: 0.012 score: 15.2
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 375..442 e-value: 4.2E-28 score: 97.2
IPR011991	Winged helix-turn-helix DNA-binding domain	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 373..443
None	No IPR available	GENE3D	1.20.1310.10		coord: 45..182 e-value: 1.3E-21 score: 76.4
None	No IPR available	GENE3D	4.10.1030.10		coord: 214..283 e-value: 3.9E-17 score: 61.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..212
IPR001373	Cullin, N-terminal	PFAM	PF00888	Cullin	coord: 103..348 e-value: 4.9E-30 score: 104.6

Blast

[Close]

BLAST of TCONS_00011346-protein vs. Swiss-Prot (Human)
Match: ANC2 (Anaphase-promoting complex subunit 2 OS=Homo sapiens GN=ANAPC2 PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 7.424e-96
Identity = 177/456 (38.82%), Postives = 267/456 (58.55%), Query Frame = 0

Query:    1 YVSTIRSLRELDPSGIILENVCSPLREYLRSRDDTIKCIITCLTDQGSGP-DLSEEL-------LGFGDDFDTTKSCDVESDGEEWYPDPVDAVTSDAQTKSQRRADILNILVNIYGSQDTFVSQYRILLADRILNNYSYDVTNERRYIELLKRRFGENHMHYCDIMLKDIQDSHRINRRITTEMKKKQKGGEQADQTKENKEKKDKGEEVSVSSKTGPETPDKIDFNAFILSSAFWPTLANESVDPPSQVESLMSDYNDLFKQSKGMRSLEWLNNLGSVEVEVELDEGVTKNFNVTPAQATLLVKFQEKDDWTLNDLATSLNINKSSLRNRIAFWIGQGVIIEKSNDHFTSAQTFQSSQLNNSIY-ESDDE--CGATSAQNQKDQELQVYWSYVVGMLTNIGSLPLDRIHAMLKMFAST-EASTQCTLDDVKSFLQAKVNNGELVYVGGVYKLPK 444
            Y+S I++LR LDPS +ILE  C P+R YLR+R+DT++ I+  LT    G  DL+ EL       L  G D     S D   + E+W PDPVDA      +  +R +DI+++LV+IYGS+D F+++YR LLADR+L+ +S+    E R +ELLK RFGE  MH+C++MLKD+ DS RIN  I  E           D+ +  +E+   G                    A ILSS FWP   +E ++ P  + + +  Y   ++Q K MR+L W + LG V ++VEL +  T +  VTP QA +L+ FQ++  WTL +L+ ++ +  + LR R++ W+ QGV+ E+    F+  +  +    +N +  +SDDE   G  S  +QK++EL ++W+Y+  MLTN+ SL LDRI+ ML+MF  T  A  +  L +++ +LQ KV + +LVY  GVY+LPK
Sbjct:  400 YISAIKALRVLDPSMVILEVACEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLETGQD-----SEDDSGEPEDWVPDPVDA-DPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREE-----------DEKRPAEEQPPFG------------------VYAVILSSEFWPPFKDEKLEVPEDIRAALEAYCKKYEQLKAMRTLSWKHTLGLVTMDVELADR-TLSVAVTPVQAVILLYFQDQASWTLEELSKAVKMPVALLRRRMSVWLQQGVLREEPPGTFSVIEEERPQDRDNMVLIDSDDESDSGMASQADQKEEELLLFWTYIQAMLTNLESLSLDRIYNMLRMFVVTGPALAEIDLQELQGYLQKKVRDQQLVYSAGVYRLPK 819

The following BLAST results are available for this feature:

BLAST of TCONS_00011346-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011346-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ANC2	7.424e-96	38.82	Anaphase-promoting complex subunit 2 OS=Homo sapie...	[more]

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TCONS_00011346-protein (polypeptide) - C. hemisphaerica