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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00010261-protein ID=TCONS_00010261-protein|Name=TCONS_00010261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=727bp
AQGSSQGCGWFRGVIKKVAILIEGAKRKMSSPQELPQQAANYLFISSNKE
AKRVIDTKVQNGKRYYKVKWESSWEAEDSVGEYQDLVDQFWNFVKRVSSD
DGAEDLQKKSALSEEDGQEESTIPNSEDETPSKGAITLSDCVKLQESGNF
YRLTQVNKESDDERPIFIVQGNQPQMKRKKGNVHVIGLQHEPKQAKKQRT
DDPSLPPVPVTQKPPAVEPLANLVVKDYPAVEPLANLVVKDYPAVEPLAN
LVVEDYPVTVPPTNPVSKDSSNSGPDKKRQTQADPNSDDTYGNATTTDKI
FGWDNPYVCISFFCRICKDEQIFDEDEWRTHFNSHLVNPQPLDERPAKTN
NFEVCYKICSDPKIPWIQKVDCLIQNYGVNQYVRLVFLCRICRKEQKSTV
TGNWRNHFQVTHSANDPLKCDLCGVPVKSKHTLNEHKKIHHKPASKEKEK
SIHSCDICSMPFQRKNELKKHVSQSHTQSNVFMALQQPTLQKTFDPSTKV
GASVKKPHQNSFIDTTFTEPAKPSKKKTKNTSASNTNGRFTCGMCHRSFK
TKIEMNSHQEEQHFFNVHSSAKQIYQCPKCEEVFAKHINLLNHTIEKHGI
QDTLPGAITVADLPKENPNENKTKSSSEKRKSTPKKLAPTELEASSSNTS
DVSATSETLQLQPDLVKIMNKQRSEQIEGSGFQDEESDQEEDGSNLIVII
KEEETFDDPDESFVVNVPLEERPPWTP Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 312..335
e-value: 37.0
score: 8.3
coord: 453..476
e-value: 0.026
score: 23.7
coord: 575..598
e-value: 0.017
score: 24.3
coord: 387..412
e-value: 64.0
score: 6.2
coord: 540..563
e-value: 0.02
score: 24.0
coord: 418..440
e-value: 0.15
score: 21.2 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 420..441 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 455..476 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 542..563 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 577..598 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 540..573
score: 10.242 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 575..603
score: 9.058 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 453..481
score: 9.889 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 418..445
score: 8.85 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 387..441 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 540..563
e-value: 0.0037
score: 17.5
coord: 453..476
e-value: 0.018
score: 15.4 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 573..588
e-value: 0.16
score: 11.5 |
| None | No IPR available | GENE3D | 2.40.50.40 | | coord: 49..199
e-value: 3.9E-6
score: 26.3 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 589..632
e-value: 0.36
score: 10.6 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 385..426
e-value: 5.7E-6
score: 26.1
coord: 466..549
e-value: 3.9E-7
score: 29.8 |
| None | No IPR available | GENE3D | 2.20.28.10 | | coord: 427..465
e-value: 1.2E-4
score: 21.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 104..134 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 257..292 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 189..213 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 514..537 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 610..658 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 673..727 |
| None | No IPR available | CDD | cd00024 | CHROMO | coord: 50..92
e-value: 9.23826E-4
score: 36.8583 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 550..572
e-value: 0.0097
score: 15.4 |
| IPR016197 | Chromo domain-like | SUPERFAMILY | 54160 | Chromo domain-like | coord: 50..94 |
Blast
The following BLAST results are available for this feature:
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