TCONS_00010001-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010001-protein
Unique NameTCONS_00010001-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010001-protein ID=TCONS_00010001-protein|Name=TCONS_00010001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp
KNVNTDFPFKFLSRAKTSKSFFRRANPDELNFYSKEEKLFLTKMREQLNE
EGIITLKINFDNSNGRRVENTQQHGQHDDDQTFSSNKEGVLLSRVLNLVN
EFPWPKSNVSVHYTTKTSEDRNGNSLIMKEPENIKARVTDLPVPVLLKIF
SMLDVISLCRVSKTCQSWYKIANDELLWQKKLDCDSHRWEMVDHLSHPQT
HFEMNPESTFKEIYLQCCPECRTKREKTSMLPSLPKLGFYFGFSNPKVAM
FGSGLDRNGFVKKLLWDKHSPFVVQKMFPGQLEGLGSGFTLSYSSGSIDL
TTLYRMSKAERENDQNPNERVSKLLIADTENEGQLTLSHPARQLCSTIDA
FVYVVKADDIDKVCFGSDELKAMLDERWSQPKVPLLVLCLKSDTTVQAVP
SITVADQLNLRSLSRPWQVRQCDVRSMNGILPGVHWFTKRIMSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005611XLOC_005611Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010001TCONS_00010001Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR006689Small_GTPase_ARF/SAR
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005525GTP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005525 GTP binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 141..181
e-value: 4.3E-7
score: 39.6
IPR001810F-box domainPFAMPF12937F-box-likecoord: 140..180
e-value: 1.5E-12
score: 47.1
IPR001810F-box domainPROSITEPS50181FBOXcoord: 135..181
score: 13.366
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 136..219
NoneNo IPR availableGENE3D3.40.50.300coord: 287..444
e-value: 3.3E-7
score: 29.2
NoneNo IPR availableGENE3D1.20.1280.50coord: 136..227
e-value: 7.7E-15
score: 54.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..84
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 342..440
e-value: 1.8E-10
score: 40.5

Blast
[Close]
BLAST of TCONS_00010001-protein vs. Swiss-Prot (Human)
Match: FBX4 (F-box only protein 4 OS=Homo sapiens GN=FBXO4 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.255e-25
Identity = 89/351 (25.36%), Postives = 150/351 (42.74%), Query Frame = 0 
Query:  117 TSEDRNGNSLIMKEPENIKARVTDLPVPVLLKIFSMLDVISLCRVSKTCQSWYKIANDELLWQKKLDCDSHRWEMVDHLSHPQTHFEMNPEST--------FKEIYLQCCPECRTKREKTSMLPSLPKLGFYFGF-------SNPKVAMFGSGLDR-NGFVKKLLWDKHSPFVVQKMFPGQLEGLGSGFTLSYSS-GSIDLTTLYRMSKAER-----ENDQNPNERVSKLLIADTENEGQLTLSHPARQLCSTIDAFVYVVKADDIDKVCFGSD--ELKAMLDERWSQPKVPLLVLCLKSDTTVQAVPSITVADQLNLRSLSRPWQVRQCDVRSMNGILPGVHWFTKRIMS 443
             S++R   +   +E +   + +T LP+ V L I S L    LC++  T   W +   D +LW+  L  D   W  VD  S P       P S         +  +Y  CCP   T+R   S   S P  G    F       + P+ AMFG GL+  N  +   L           +   Q++G+GSG     ++    ++  LY  ++ ER     E+    N+  S+    D +   + ++    +++C  +D F+YV  A+   +  +  +   + AM D  +     PLLVL   S   V+ +P   +A +L+L  L+ PW V+  +  ++ G L G+ W  + + S
Sbjct:   38 VSKERVARTTSREEVDEAASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFFDYMAVYRMCCP--YTRRASKS---SRPMYGAVTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 383
The following BLAST results are available for this feature:
BLAST of TCONS_00010001-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX41.255e-2525.36F-box only protein 4 OS=Homo sapiens GN=FBXO4 PE=1... [more]
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