TCONS_00009593-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009593-protein
Unique NameTCONS_00009593-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length184

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009593-protein ID=TCONS_00009593-protein|Name=TCONS_00009593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MAFQCRCGIQAVKNASKAARLVVGSSLRGVIASPLLSTQRNFSNTEHATR
SPEDQYEDVAQLFSDVKLKVRGSDEAVLDSYTQFVQRAATTLNLDISGKI
VIPMHIEKRTLLKSPHVYKTHRYQYELRTHARMLQLRQMTGNTADIFLEY
IQRNLPEGVSMSVEATELESMPDYLTRAAMENSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005358XLOC_005358Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009593TCONS_00009593Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027486Ribosomal_S10_dom
IPR001848Ribosomal_S10
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 67..164
e-value: 6.7E-33
score: 125.3
IPR027486Ribosomal protein S10 domainGENE3D3.30.70.600coord: 63..170
e-value: 7.4E-24
score: 83.4
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 67..163
e-value: 1.3E-27
score: 95.8
IPR027486Ribosomal protein S10 domainSUPERFAMILY54999Ribosomal protein S10coord: 66..163
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 63..165
score: 14.551

Blast
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BLAST of TCONS_00009593-protein vs. Swiss-Prot (Human)
Match: RT10 (28S ribosomal protein S10, mitochondrial OS=Homo sapiens GN=MRPS10 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.244e-33
Identity = 60/123 (48.78%), Postives = 81/123 (65.85%), Query Frame = 0 
Query:   62 LFSDVKLKVRGSDEAVLDSYTQFVQRAATTLNLDISGKIVIPMHIEKRTLLKSPHVYKTHRYQYELRTHARMLQLRQMTGNTADIFLEYIQRNLPEGVSMSVEATELESMPDYLTRAAMENSS 184
            L+  + + V+G D+AVLDSY  F   AA  L + I      P  IE+ TLL+S H+YK HR QYE+RT  R L+L  +TG+TAD++LEYIQRNLPEGV+M V  T+LE +P+++     E  S
Sbjct:   72 LYKRLSVLVKGHDKAVLDSYEYFAVLAAKELGISIKVH-EPPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTADVYLEYIQRNLPEGVAMEVTKTQLEQLPEHIKEPIWETLS 193
The following BLAST results are available for this feature:
BLAST of TCONS_00009593-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT101.244e-3348.7828S ribosomal protein S10, mitochondrial OS=Homo s... [more]
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