TCONS_00009423-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009423-protein
Unique NameTCONS_00009423-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length126

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009423-protein ID=TCONS_00009423-protein|Name=TCONS_00009423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MQSSKTIKRKMAFSSIPKDLRHLRACLLCSMVKTLEQFEIDGCDNCERFL
YLKGDREQTMSCTSSNFDGVVSMMSPDESWVAKWQRIDKLRPGCYAVSVS
GKLPSSVIKELKGRGITYRSRDTSTK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005280XLOC_005280Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009423TCONS_00009423Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022800Spt4/RpoE2_Znf
IPR009287Spt4
IPR029040RPABC4/Spt4
Vocabulary: Biological Process
TermDefinition
GO:0032786positive regulation of DNA-templated transcription, elongation
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032786 positive regulation of DNA-templated transcription, elongation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 23..100
e-value: 1.1E-43
score: 161.1
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 23..100
e-value: 2.6E-32
score: 110.7
IPR022800Spt4/RpoE2 zinc fingerCDDcd07973Spt4coord: 21..118
e-value: 6.69306E-55
score: 168.186
IPR009287Transcription initiation Spt4PIRSFPIRSF025023Spt4coord: 11..126
e-value: 3.0E-49
score: 163.6
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 17..99

Blast
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BLAST of TCONS_00009423-protein vs. Swiss-Prot (Human)
Match: SPT4H (Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.580e-59
Identity = 72/116 (62.07%), Postives = 98/116 (84.48%), Query Frame = 0 
Query:   11 MAFSSIPKDLRHLRACLLCSMVKTLEQFEIDGCDNCERFLYLKGDREQTMSCTSSNFDGVVSMMSPDESWVAKWQRIDKLRPGCYAVSVSGKLPSSVIKELKGRGITYRSRDTSTK 126
            MA  ++PKDLRHLRACLLCS+VKT++QFE DGCDNC+ +L +KG+RE    CTSS+FDG+++MMSP++SWV+KWQR+   +PG YAVSV+G+LP  +++ELK RG+ Y+SRDT+ K
Sbjct:    1 MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIK 116
The following BLAST results are available for this feature:
BLAST of TCONS_00009423-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPT4H2.580e-5962.07Transcription elongation factor SPT4 OS=Homo sapie... [more]
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