TCONS_00009207-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009207-protein
Unique NameTCONS_00009207-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length211

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009207-protein ID=TCONS_00009207-protein|Name=TCONS_00009207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MRRFKVVLIGDSDVGKSSTFIRFRDGKFDDYIQSTIGLDFATREVSFQVN
EDDPETETKTEIQLWDTAGLERAGRMTSNYYNFSHAVILMYDVTDTTTMN
NLEMWYDNAKNDSNNTNTIYFLVGNKIDETPGEIQVSEGDACRFAKESLK
IDSDKYDVTYRISAKTGNGLNDLFQKITHILSGCSKQPAEKLDNTITDLT
DAGREKDKCGC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005169XLOC_005169Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009207TCONS_00009207Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 4..25
score: 47.12
coord: 116..129
score: 42.77
coord: 159..181
score: 23.31
coord: 27..43
score: 32.16
coord: 53..75
score: 32.11
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 6..183
e-value: 1.5E-5
score: -46.4
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 4..183
e-value: 1.2E-29
score: 114.5
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 1..184
e-value: 6.5E-6
score: -24.8
NoneNo IPR availableGENE3D3.30.70.1390coord: 2..75
e-value: 7.5E-20
score: 70.2
NoneNo IPR availableGENE3D3.40.50.300coord: 76..182
e-value: 6.9E-19
score: 67.2
NoneNo IPR availablePROSITEPS51419RABcoord: 1..211
score: 21.179
NoneNo IPR availableCDDcd00154Rabcoord: 4..178
e-value: 4.89222E-47
score: 153.381
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 1..176
e-value: 9.8E-20
score: 68.9
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 5..179
e-value: 2.1E-34
score: 118.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..182

Blast
[Close]
BLAST of TCONS_00009207-protein vs. Swiss-Prot (Human)
Match: RB33A (Ras-related protein Rab-33A OS=Homo sapiens GN=RAB33A PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.089e-27
Identity = 58/146 (39.73%), Postives = 83/146 (56.85%), Query Frame = 0 
Query:    1 MRRFKVVLIGDSDVGKSSTFIRFRDGKFDDYIQSTIGLDFATREVSFQVNEDDPETETKTEIQLWDTAGLERAGR-MTSNYYNFSHAVILMYDVTDTTTMNNLEMWYDNAKNDSNNTNTIYFLVGNKIDETPGEIQVSEGDACRFA 145
            +R FK+++IGDS+VGK+    RF  G F D  ++TIG+DF  RE + ++  +      K ++Q+WDTAG ER  + M  +YY   HAV+ +YDVT  T+  NL+MW       +        LVGNK D    +IQV    A +FA
Sbjct:   34 IRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDF--REKTVEIEGE------KIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCD-LREQIQVPSNLALKFA 170
The following BLAST results are available for this feature:
BLAST of TCONS_00009207-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB33A4.089e-2739.73Ras-related protein Rab-33A OS=Homo sapiens GN=RAB... [more]
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