TCONS_00008769-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008769-protein
Unique NameTCONS_00008769-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008769-protein ID=TCONS_00008769-protein|Name=TCONS_00008769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MMNSDIVEQEVHWFWTESFWLPPGRTWKDYESTDTLTKANFRDLYFIPIY
VIMLTCVRFLFERYIAKPFCVYLGIENKTFERNKLCELVYDTVTKYPKTK
EYEAIAKETGMTTSEVNSWFRRRRASSKNSKMNKATETCWRAFVYLLLFI
YGLLILAKSDWFMDHSTWLPGYINHPFTIELKVYYFAEISFYFSLLFSQF
YDTKRKDFLQQFIHHVVTLTLLLGSFLLSAYRFGAIIMFIHDTADFWLES
AKLTNYAKLQKVCDVLFGIFAILFFVTRLIYYPGWVAYAFFHYNNESKGI
VFNTLVCLCFVLLFLNFYWGFLVLKLAYKVLFSGKGASDTRSDTEDSSGS
ED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004915XLOC_004915Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008769TCONS_00008769Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR006634TLC-dom
IPR016439Lag1/Lac1
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005783endoplasmic reticulum
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 77..134
e-value: 0.0023
score: 21.5
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 89..128
e-value: 4.7E-7
score: 29.4
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 87..130
score: 10.187
IPR006634TRAM/LAG1/CLN8 homology domainSMARTSM00724lag1_27coord: 133..332
e-value: 2.1E-42
score: 156.9
IPR006634TRAM/LAG1/CLN8 homology domainPFAMPF03798TRAM_LAG1_CLN8coord: 135..325
e-value: 1.8E-34
score: 119.2
IPR006634TRAM/LAG1/CLN8 homology domainPROSITEPS50922TLCcoord: 133..332
score: 13.326
IPR016439Ceramide synthase component Lag1/Lac1PIRSFPIRSF005225LAG1_LAC1coord: 4..352
e-value: 2.7E-72
score: 242.2
NoneNo IPR availableGENE3D1.10.10.60coord: 12..138
e-value: 1.5E-9
score: 36.7
NoneNo IPR availableCDDcd00086homeodomaincoord: 78..131
e-value: 1.23067E-7
score: 46.8529
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 87..133

Blast
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BLAST of TCONS_00008769-protein vs. Swiss-Prot (Human)
Match: CERS6 (Ceramide synthase 6 OS=Homo sapiens GN=CERS6 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 8.173e-72
Identity = 127/337 (37.69%), Postives = 189/337 (56.08%), Query Frame = 0 
Query:   13 WFWTESFWLPPGRTWKDYESTDTLTKANFRDLYFIPIYVIMLTCVRFLFERYIAKPFCVYLGIE---NKTFERNKLCELVYDTVTKYPKTKEYEAIAKETGMTTSEVNSWFRRRRASSKNSKMNKATETCWRAFVYLLLFIYGLLILAKSDWFMDHSTWLPGYINHPFTIELKVYYFAEISFYFSLLFSQFYDTKRKDFLQQFIHHVVTLTLLLGSFLLSAYRFGAIIMFIHDTADFWLESAKLTNYAKLQKVCDVLFGIFAILFFVTRLIYYPGWVAYAFFHYNNESKGI-----VFNTLVCLCFVLLFLNFYWGFLVLKLAYKVLFSGKGASDTR 341
            WFW E FWLP   TW D ++T+  T     DLY        +  VR +FER++AKP  + L I+    +    N + E V+  +TK+P  K  E ++K+       +  WFR+RR   K S + +  E+ WR   YL +F YG+  L K+ W  +       Y   P T +L  YY  E+SFY+SL+FSQF D KRKDF   F+HH+V++ L+  S++ +  R G +++ +HD+AD  LE+AK+ NYAK QK+CD+LF +FA++F  TRL  +P WV       + E  G      VFN L+    ++  LN +W +L++K+A K +  GK + D R
Sbjct:    7 WFWNERFWLPHNVTWADLKNTEEATFPQAEDLYLAFPLAFCIFMVRLIFERFVAKPCAIALNIQANGPQIAPPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSTLTRFCESMWRFSFYLYVFTYGVRFLKKTPWLWNTRHCWYNYPYQPLTTDLHYYYILELSFYWSLMFSQFTDIKRKDFGIMFLHHLVSIFLITFSYVNNMARVGTLVLCLHDSADALLEAAKMANYAKFQKMCDLLFVMFAVVFITTRLGIFPLWVLNTTLFESWEIVGPYPSWWVFNLLL---LLVQGLNCFWSYLIVKIACKAVSRGKVSKDDR 340
The following BLAST results are available for this feature:
BLAST of TCONS_00008769-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CERS68.173e-7237.69Ceramide synthase 6 OS=Homo sapiens GN=CERS6 PE=1 ... [more]
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