TCONS_00008578-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008578-protein
Unique NameTCONS_00008578-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008578-protein ID=TCONS_00008578-protein|Name=TCONS_00008578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=781bp
LEDLDMINLLHQFILLVIFFTCYQCADVSKNYTILYDDFFTDQIDAAKSN
LHNVKWESIQANSGLQSILISGTSDNVVFTFSEKINAMSTANNINFKDSL
DNLEKSLIKSGHQKCFGYSPDLRRSLIALFYSIFLKEAAIVTDDSPCIID
FAKDFDTALKAHKMYDQANPTLYHVTYDPNEEINQHHKFYELKLHEVSLI
ILLFPSTHSHKVYQDAEHFALLTPSQLWIVPDHQGDTSRHRPAKMLTFDF
ERVNNGNGGGMWRYKKFGDTVQDLVQLHMESDKECQSFHQDQKDFCIQRT
LFHEIQTVQSRIYPNYHLDLTIRYRNLADKQTGWINVSSEIRGDEFLVHD
RNIALLKPVTNEAMYQNKITAVTIIDEPYSVKEDKSYDKINKICITGIKC
RYRDPSAGPQTNGTWIISCCTGYVLELFQMVLKDLNLEVDMYVVEDGKYG
KEQPNGEWDGLIGDLKSGKADIGVGSLSISGARSKVVDFTSPWLEIDLGL
LVKPKISKLDFLNFEFIAPLGTDLQLVLWVTVIGVMFVVIFIENNRYLVS
LSDDRFLTDKYYSPYESMSYIGGVFLQRDLGGINPKKPGARVASIVFAFG
MVVVVTTYTALLVEQGVRREEKDPFVGSDDPRMRNPSIDYKFATLQSSNY
ETFFEKSELSEFKKVSRFMKKYNAPNSTAAIKAIKSGKLDAFLYDYDFLV
WYVSRDRQCELKVRKDTLITSGLGFAFRKDFKWWSNFNQAVLRYRENDEL
QNIHSKWFFNGGCNNDGPETPKIRFDLYNML
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004798XLOC_004798Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008578TCONS_00008578Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
IPR001638Solute-binding_3/MltF_N
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 401..760
e-value: 8.6E-26
score: 101.7
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 409..467
e-value: 8.4E-12
score: 55.2
IPR001638Solute-binding protein family 3/N-terminal domain of MltFSMARTSM00062AABind_6coord: 416..761
e-value: 0.0018
score: 13.8
IPR001638Solute-binding protein family 3/N-terminal domain of MltFPFAMPF00497SBP_bac_3coord: 421..758
e-value: 4.2E-23
score: 81.8
NoneNo IPR availableGENE3D3.40.190.10coord: 357..528
e-value: 8.1E-20
score: 70.4
NoneNo IPR availableGENE3D3.40.190.10coord: 615..719
e-value: 1.1E-15
score: 57.4
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 419..520
coord: 641..759

Blast
[Close]
BLAST of TCONS_00008578-protein vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.821e-43
Identity = 167/652 (25.61%), Postives = 297/652 (45.55%), Query Frame = 0 
Query:  177 YDPNEEINQHHKFYELKLHEVSLIILLFPSTHSHKVYQDAEHFALLTPSQLWIVPDHQ--GDTSRHRPAKMLTFDFERVNNGNGGGMWRYKKFGDTVQDLVQ-LHMESDKECQSFHQDQKDFCIQRT-------LFHEI-------QTVQSRI---------YPNYHLDLTIRYRNLADKQTGWINVSSEIRGDEFLVHDRNIALLKPVTNEAM-YQ--NKITAVTIIDEPY----------SVKEDKSY--DKINKICITGIKCRYRDPSAGPQTNGTWIISCCTGYVLELFQMVLKDLNLEVDMYVVEDGKYG-KEQPNG----EWDGLIGDLKSGKADIGVGSLSISGARSKVVDFTSPWLEIDLGLLVKPKI--SKLDFLNFEFIAPLGTDLQLV--LWVTVIGVMFVVI--FIENNRYLVSLSDDRFLTDKYYSPYESMSYIGGVFLQRDLGGINPKKPGARVASIVFAFGMVVVVTTYTALLVEQGVRREEKDPFVGSDDPRMRNPSIDYKFATLQSSNYETFFEKSELSEFKKVSRFMKKYNAPNSTAAIKAIKSGKLDAFLYDYDFLVWYVSRDRQCELKVRKDTLITSGLGFAFRKDFKWWSNFNQAVLRYRENDELQNIHSKWFFNGGCNNDGPETPKIRFD 776
            +DP  + N      E K  E  +IIL      +  VY+ A    +     +W+V + +  G+  R+ P  +L      +N  N           D V  + Q +H   +KE  +   D    C+  T       LF  +         V  R+         + NY + + ++ R L   Q G  N      G   + +DR I      T +   YQ   ++  VTI  EP+          + KE+ +   D + K+  TG      D S G   +   +  CC G+ ++L   + + +N   ++++V DGK+G +E+ N     EW+G++G+L SG+AD+ V  L+I+  R++ ++F+ P+    L +LVK +I  S LD     F+ P  + L L+  L V V+ VM  ++  F    R+ V+  ++    +   +   +M +  GV L   +G   P+   AR+  +V+A   +++V +YTA L    V    ++   G +DPR+RNPS  + +AT++ S+ + +F +    E   + R M+K+N  ++  AI+A++  KL AF++D   L +  S  ++C+L    +    SG G   RKD  W  N + ++L+  EN  ++++   W     C++       + F+
Sbjct:  197 FDPGTK-NVTALLMEAKELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLVGEREISGNALRYAPDGILGLQL--INGKNESA-----HISDAVGVVAQAVHELLEKENIT---DPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFANYSI-MNLQNRKLV--QVGIYN------GTHVIPNDRKIIWPGGETEKPRGYQMSTRLKIVTIHQEPFVYVKPTLSDGTCKEEFTVNGDPVKKVICTGPN----DTSPGSPRHT--VPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLD----SFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEE---EDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQ--VELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEAS--QKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFE 811
The following BLAST results are available for this feature:
BLAST of TCONS_00008578-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDZ14.821e-4325.61Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi... [more]
back to top