TCONS_00008553-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008553-protein
Unique Name	TCONS_00008553-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	538

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008553-protein ID=TCONS_00008553-protein|Name=TCONS_00008553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp
MESETNEASLEAAILAYQEQLEQIGGILPTADELTKLELYDLEKDLKELI
SVTQEQLLTLKKESLLKVCEDINKYPLQNDSNTKAFDENSKRENTEPTEV
NEEHNESEDIICQKYRVKYTQEWGTFQFHNVMLMCIEEKPVNLTNEEEIL
KDEVPNLMARVLFLNPIHKSMVTCKFYLDGKCNYADDDCRFSHGFLVPTD
ELQEYKEPDFTKLYVGEPCLAKFHDGVWYKAKIDDMNEDEVTVSFDTKNE
SKTVDYHEIVPLEESSSPETNSENESESDNEETGDGESFVQLSYKTSSMT
DPLGEWEQYTKGIGSKLLAKMGYIFGKGLGKDSEGRIEPVEIRLLPPGKS
LDKIAELREKGYIKDPTKRKNQSVKKQIAAEIRTKNKEEKERATFDLIDG
LTNRKGKTGSSSSHFHVNTRSSIEETYQSMKQHRSKQKDTTGQGSSRGKQ
TQNKQSKGASSDVNIQIFKNSEKISTLNKKLTKLKDSLKRNPGETSISRT
LKYNIDETEKEIEKLRQVEKSLQNKVYMKNQSKKLSIF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004786	XLOC_004786	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008553	TCONS_00008553	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000467	G_patch_dom
IPR002999	Tudor
IPR000571	Znf_CCCH

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 371..391
None	No IPR available	COILS	Coil	Coil	coord: 498..525
None	No IPR available	GENE3D	2.30.30.140		coord: 209..273 e-value: 2.1E-11 score: 43.1
None	No IPR available	GENE3D	4.10.1000.10		coord: 87..205 e-value: 1.6E-5 score: 24.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..468
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..286
None	No IPR available	CDD	cd04508	TUDOR	coord: 216..263 e-value: 8.26725E-6 score: 42.5851
None	No IPR available	SUPERFAMILY	63748	Tudor/PWWP/MBT	coord: 201..264
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 308..354 e-value: 1.3E-8 score: 44.6
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 310..351 e-value: 1.9E-11 score: 43.6
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 310..356 score: 11.809
IPR002999	Tudor domain	SMART	SM00333	TUDOR_7	coord: 211..267 e-value: 7.4E-4 score: 28.8
IPR002999	Tudor domain	PROSITE	PS50304	TUDOR	coord: 212..269 score: 9.616
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 168..195 e-value: 0.0045 score: 26.2
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 169..196 score: 13.065

Blast

[Close]

BLAST of TCONS_00008553-protein vs. Swiss-Prot (Human)
Match: ZGPAT (Zinc finger CCCH-type with G patch domain-containing protein OS=Homo sapiens GN=ZGPAT PE=1 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 6.587e-62
Identity = 135/404 (33.42%), Postives = 203/404 (50.25%), Query Frame = 0

Query:    6 NEASLEAAILAYQEQLEQIGGILPTA-DELTKLELYDLEKDLKELISVTQEQLLTLKKESLLKVCEDINKYPLQNDSNTKAFDENSKRENTEPTEVNEEHNES-----------------------EDIICQKYRVKYTQEWGTFQFHNVMLMCIEEKPVNLTNEEEILKDEVPNLMARVLFLNPIHKSMVTCKFYLDGKCNYADDDCRFSHGFLVPTDELQEYKEPDFTKLYVGEPCLAKFHDGVWYKAKIDDMNEDEVTVSFDTKN-ESKTVDYHEIVPLEESSSPETNSENESESDNEETGDGESFVQL-------SYKTSSMTDPLG-----------------EWEQYTKGIGSKLLAKMGYIFGKGLGKDSEGRIEPVEIRLLPPGKSLDKIAELREK 360
            +E SLE+A+  Y+ QL+Q+   L    D   + +L  L+ DLKELI +T+  L++++K SLL    D  +   Q D+  +AF E        P       +E+                       E++   K    Y   WGT ++HN M++  EE              E  +   RVL+L P HKS+  C F+L+GKC +  ++CRFSHG +V  DEL+ +++PD + L  G  CLAK  DG+W+ A+I D++    TV FD+       V+   I+P      P      ES+SD++ TGD  S+ ++       S ++S++   L                   WE +T+GIGS+LL KMGY FGKGLG+ +EGR+EP+   +LP GKSLD+  E  +K
Sbjct:    2 DEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSLLAAL-DEERPGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEEEEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEA-------------EDGSAGVRVLYLYPTHKSLKPCPFFLEGKCRF-KENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITDVDNGYYTVKFDSLLLREAVVEGDGILP------PLRTEATESDSDSDGTGD-SSYARVVGSDAVDSAQSSALCPSLAVVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVETLQK 383

The following BLAST results are available for this feature:

BLAST of TCONS_00008553-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008553-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZGPAT	6.587e-62	33.42	Zinc finger CCCH-type with G patch domain-containi...	[more]

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TCONS_00008553-protein (polypeptide) - C. hemisphaerica