TCONS_00008509-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008509-protein
Unique NameTCONS_00008509-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008509-protein ID=TCONS_00008509-protein|Name=TCONS_00008509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=666bp
FVYVEKKVYCFSLLIGAPSRQVGWEDVCRVCNLFEATLLSGVLIKMFYLK
IIFLVSYFLIIFIVFRVSSLKGEKTFACFYKTFSDLFNSVLLDDASSKPV
LEHGNKQSNASNQQENVKKVNDEDEETTEIPDYRQFIEKVEDTKASVWLV
KVIPPSTQTQSPHKDGFNREWKKLSKSFRNNGIRTSTYKCSRDIRLCLIH
KITSESVLLTMPKGSHPKGKVAVHVFDPKASKISLYNWVQKRLHSHVKTV
HSISELVERPAKRLKRKKDLVPSMYFVYRSNSNQKLPLSISALSIKFTGR
IKFYMLKGKNKENDNILAMNKVSKYSYGNHEGENMTYSCLELFLKTLHPE
VNDIFIASVILLNMACWFEVSLQKGGPLRRLLFYIWGFATSNILLVTIWL
PLIKLLYMPQVQPIVEVCLQNLQNIMFTNFAAVLRQDFLELTKHLHLVLS
GFIGYGVFLGYLHFKFRNDSNETSFSGIFQNDIEDIRGNITVTLQNITPT
LRIYRFEAGIERILHTLSTTELWLPTDLYTEYIKDLPTWKHCNGIKMQKD
CVENLSQIPFCKIDETEDERSNSDEKTNQQGRCCQKNCPIPSIPDHVFKV
NSCVICLEEYMCQNVLLGLPCGHSFHQKCANDWLVLEGAQNKCPVCRWPC
NIKKGTKVEIIDTFNE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004758XLOC_004758Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008509TCONS_00008509Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 603..646
e-value: 3.3E-7
score: 40.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 601..647
e-value: 3.4E-11
score: 43.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 603..647
score: 13.36
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 603..650
e-value: 4.82334E-10
score: 55.1444
NoneNo IPR availableGENE3D3.40.30.10coord: 102..322
e-value: 1.8E-5
score: 23.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..126
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 602..654
coord: 562..569
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 600..661
e-value: 3.0E-13
score: 48.7

Blast
[Close]
BLAST of TCONS_00008509-protein vs. Swiss-Prot (Human)
Match: RN103 (E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.472e-66
Identity = 163/581 (28.06%), Postives = 271/581 (46.64%), Query Frame = 0 
Query:  135 QFIEKVEDTKASVWLVKVIPPSTQTQSPHKDGFNREWKKLSKSFRNNGIRTSTYKCSRDIRLCLIHKITSESVLLTMPKGSHPKGKVAVHVFDPKASKIS-LYNWVQKRLHSHVKTVHSISELVERPAKRLKRKKDLVPSMYFVYRSNSNQKLPLSISALSIKFTGRIKFYMLKGKNKENDNILAMNKVSK------------YSYGNHEGENMTYSCLELFLKTLHPEVNDIFIASVILLNMACWFEVSLQKGGPLRRLLFYIWGFATSNILLVTIWLPLIKLLYMPQVQPIVEVCLQNLQNIMFTNFAAVLRQDFLELTKHLHLVLSGFIGYGVFLGYLHFKFRNDSNETSFSGIFQNDIEDIRGNITVTLQNITPTLRIYRFEAGIER----ILHTLSTTELWLPTDLYTEYIKDLPTWK-HCNGIKMQKDCVENLSQIPFCKIDETEDERSNSDEKT----------NQQG----------RCCQKNCPIP-----------------------SIPDHVFKVNSCVICLEEYMCQNVLLGLPCGHSFHQKCANDWLVLEGAQNKCPVCRWPCNIKK 654
             F E VEDTK  +WLV+VI      +SP     +  W+K+ K     GIRT T+ CS D R C        ++++++P+ S  KGKV +  +  +  ++  ++ W+     S +KT+++   L E        K D      +++ +N +Q  P   SALSIKFTGR++F  +  +N +N + +    +              Y YGNH GE ++   ++ FL++L PEVND+F+ S++L+N+  W ++ + +G  ++R +  I    T N LL+  WLP++  L +P +    E  L+ L+    T  A+ +R D++  + H  L LS ++G+G+ + Y   K R ++N    +      +  +    T  L +   + + +  E+  +      L  L+  +LWL   + T+YIK+LP W+  C G++ +++  E           E+E+  + S EK           N  G           C  K C                          + P  +     CV+CLE +    +L+GLPCGH FHQ C   WL   G ++ CPVCRWP   KK
Sbjct:  106 HFYELVEDTKDGIWLVQVI---ANDRSPLVGKIH--WEKMVKKVSRFGIRTGTFNCSSDPRYCRRRGWVRSTLIMSVPQTSTSKGKVMLKEYSGRKIEVEHIFKWITAHAASRIKTIYNAEHLKEE-----WNKSDQYWLKIYLF-ANLDQP-PAFFSALSIKFTGRVEFIFVNVENWDNKSYMTDIGIYNMPSYILRTPEGIYRYGNHTGEFISLQAMDSFLRSLQPEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLDSFYEYSLKLLRYSNTTTLASWVRADWMFYSSHPALFLSTYLGHGLLIDYFEKKRRRNNNNDEVNANNLEWLSSLWDWYTSYLFHPIASFQNFPVESDWDEDPDLFLERLAFPDLWLHPLIPTDYIKNLPMWRFKCLGVQSEEEMSEGSQDTE--NDSESENTDTLSSEKEVFEDKQSVLHNSPGTASHCDAEACSCANKYCQTSPCERKGRSYGSYNTNEDMEPDWLTWPADMLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLA--GGRHCCPVCRWPSYKKK 670
The following BLAST results are available for this feature:
BLAST of TCONS_00008509-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1031.472e-6628.06E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens... [more]
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