TCONS_00008418-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008418-protein
Unique NameTCONS_00008418-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1650

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008418-protein ID=TCONS_00008418-protein|Name=TCONS_00008418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1650bp
MDQFGDIVLNWSVGYDGSPVHFLDNKTICYVNGNCIKIVNIEDNSVNYLQ
SPGNGIAVLAVNPLYGYLAFSENGLNANIYIYNKNDLVKPSHTLPGFDNS
LGYKCISFANNGTLLATCTDIPNLKLSLWNWQEAEEYCSYDLQNEKFDEI
IFNPLDWHQLACVAEKTVLFWNVEKVNETFYLQKTKIGLPKKDGTFGFQF
LEGDSGSSISSRPTTGHKNLTLTQTAIAGLTGEGKDKFLEVNDKDRCHAT
CFCWQPNNQLLIACTGGMLINYDCENQNVSIIHNKDSSNQLEFNKIQLRK
DGLFASTFDGDIYQLTLSKDDFHVKSRVCTNQVVTNLKFSPNYETLMLSG
TSGSILKLVGEELSPIIEDNCIGQIIGIRNVSAALKHIAVGRSEGLISIY
EYADGKLIGKCNLESQLTCLACSPTSSTVFVGTACGCIVVIDVTEAESPR
CVYQKKLHEGPVKFIKIDETGTIMMTSSTDGHLFFCNPTLSSQFNIFGYI
DVNGEVVCMDIKALRDEDSDQTTWKVLVGLSTSGHQPASNHLVEMTINEN
LMKGASSLFLDDTKKLKDISIQKKTFVLKSYIYDVIVVNNSTAFGLVHQG
KRVVKYNLDDQDQSATPGTNAVLDASVTYPAHALPGGQIVLSCHSRWLMT
SSPDGVFIMRAVGAMNNKVPVQAANYREGGIDFAQLSPDAQQILVVSRTG
IVTSWKWNYTSLGKSKATVAIETCKSLLGEIRDVRNKEDSLIKKMKKIDL
PSELGGEQETWLHQAVQKSRKKEDEKYKTTKNNLKNEINNLRKQVLDMMS
TNDQLPDIEKLDRFEFNMDTEERNALLVGREQLLKELRAESELKDTAQQY
LWSLLKKECWDGMVTKGKNIIGFHSTIQVENYAMRERTPEEIEELDYVTQ
QLRIEQIEKGSRKANQPPEVSSYPSLLERQEDTQDGDDDASDIKNETAST
YGSLAYNYGVANDLVQSQFTLHTRNQKKSQIALLKDCVYKIKQDFNKSFN
EVYNVKQQEMKRINERNTRIQKILKDLDLHEELIEVEISSLEEPELLFTV
HDNEITVEKYVSEEEKQRFEEIAKLEEERRLAENADNLRGRALDMMMAGR
LETGIEDELKKEVEVPEFMDKPLERWTEDEHKLAKEYEQKKIELSEEREK
YRKSLETELKKLQTTNVDSTNNFDERLLLLFQKKIKTKAVILQEELKIVR
LAASILIDEELENAEFELLANLDKKKEEKQQSSLAVGDARRAVEQFKDSY
EMLVADDKTLDKMFRKEFSELDTHTIDVLYRLFKKRPRAQRTLKAAFENQ
NDIISTTPYDKGNPFQQRPSSSRAVSAAAANLERAMLELDNEQHMPENVD
IETWKRLIMLRRTKVEKEQQLKSNALVMADLNSFLQKKLDRDEELKFQVE
KAFEEIQRLREERLRFNLNLEVQLLLKQGQIEVGNCKYVPDYTDSVLIHR
SAIEDLNAVIKTLGEAKLSSMHESKEFRKGIHLLAWQLKEMFMRAEDFQS
AAQDLQLLRVTKELQGYLGETDQRQSKNQEITTLEKTIEKYSAMHNRKVS
DKKRTIRRLKRQIREKMDQNHKFDDDLEDLALNVAERTQISKKTGGDEKQ
GVHDHAMKNIIMRRKFVDLAKTQASQIGVLRAEVERLRMRTFPALLQLDA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004718XLOC_004718Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008418TCONS_00008418Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1524..1544
NoneNo IPR availableCOILSCoilCoilcoord: 1123..1172
NoneNo IPR availableCOILSCoilCoilcoord: 1549..1576
NoneNo IPR availableCOILSCoilCoilcoord: 1392..1419
NoneNo IPR availableCOILSCoilCoilcoord: 1065..1085
NoneNo IPR availableCOILSCoilCoilcoord: 770..801
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 908..944
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 667..706
e-value: 240.0
score: 1.9
coord: 320..360
e-value: 110.0
score: 4.2
coord: 404..442
e-value: 5.7
score: 12.2
coord: 235..273
e-value: 210.0
score: 2.3
coord: 448..487
e-value: 0.37
score: 19.7
coord: 87..130
e-value: 110.0
score: 4.1
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 379..808
e-value: 1.6E-22
score: 79.2
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 230..360
e-value: 3.8E-7
score: 28.8
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 16..219
e-value: 2.4E-12
score: 46.0
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 387..489
coord: 319..344
coord: 233..291
coord: 54..176

Blast
BLAST of TCONS_00008418-protein vs. Swiss-Prot (Human)
Match: CFA43 (Cilia- and flagella-associated protein 43 OS=Homo sapiens GN=CFAP43 PE=2 SV=3)

HSP 1 Score: 823.928 bits (2127), Expect = 0.000e+0
Identity = 547/1685 (32.46%), Postives = 894/1685 (53.06%), Query Frame = 0
Query:    5 GDIVLNWSVGYDGSPVHFLDNKTICYVNGNCIKIVNIEDNSVNYLQSPGNGIAVLAVNPLYGYLAFSENGLNANIYIYNKNDLVKPSHTLPGFDNSLGYKCISFANNGTLLATCTDIPNLKLSLWNWQEAEEYCSYDLQNEKFDEIIFNPLDWHQLACVAEKTVLFWNVEKVNETFYLQKTKIGLPKKDGTFGFQFLEGDSGSSISSRPTTGHKNLTLTQTAIAGLTGEGKDKFLEVND-KDRCHATCFCWQPNNQLLIACTGGMLINYDCENQNVSIIHNKDSSNQLE----FNKIQL--RKDGLFASTFDGDIYQLTLSKDDFHVKSRVCTNQVVTNLKFSPNYETLMLSGTSGSI-LKLVGEE--LSPIIEDNCIGQIIGIRNVSAALKHIAVGRSEGLISIYEYADGKLIGKCNLESQLTCLACSPTSSTVFVGTACGCIVVIDVTEAESPRCVYQKKLHEGPVKFIKIDETGTIMMTSSTDGHLFFCNPTLSSQFNIFGYIDVNGEVVCMDIKALRDEDSDQTTWKVLVGLSTSGHQPASNHLVEMTINENLMKGASSLFLDDTKKLKDISIQKKTFVLKSYIYDVIV-VNNSTAFGLVHQGKRVVKYNLDDQDQSATPGTNAVLDASVTYPAHALPGGQIVLSCHSRWLMTSSPDGVFIMRAVGAMNNKVPVQAANYREGGIDFAQLSPDAQQILVVSRT-GIVTSWKWNYTSLGKSKATVAIETCKSLLGEIRDVRNKEDSLIKKMKKIDLPSELGGEQE------------------------TWLHQAVQKSRKKEDEKYKTTKNNLKNEINNLRKQVLDMMSTNDQLPDIEKLDRFEFNMDTEERNALLVGREQLLKELRAESELKDTAQQYLWSLLKKECWDGMVTKGKNIIGFHSTIQVENYAMRERTPEEIEELDYVTQQLRIEQIEKGSRKANQPPEVSSYPSLLERQEDTQDGDDDAS--DIKNETASTY--GSLAYNYGVANDLVQSQFTLHTRNQKKSQIALLKDCVYKIKQDFNKSFNEVYNVKQQEMKRINERNTRIQKILKDLDLHEELIEVEISSLEEPELLFTVHDNEITVEKYVSEEEKQRFEEIAKLEEERRLAENADNLRGRALDMMMAGRLETGIEDELKKEVEVPEFMDKPLERWTEDEHKLAKEYEQKKIELSEEREKYRKSLETELKKLQTTNVDSTNNFDERLLLLFQKKIKTKAVILQEELKIVRLAASILIDEELENAEFELLANLDKKKEEKQQSSLAVGDARRAVEQFKDSYEMLVADDKTLDKMFRKEFSELDTHTIDVLYRLFKKRPRAQRTLKAAFENQNDIISTTPYDKGNPFQQRPSSSRAVSAAAANLERAMLELDNEQHMPENVDIETWKRLIMLRRTKVEKEQQLKSNALVMADLNSFLQKKLDRDEELKFQVEKAFEEIQRLREERLRFNLNLEVQLLLKQGQIEVGNCKYVPDYTDSVLIHRSAIEDLNAVIKTLGEAKLSSMHESKEFRKGIHLLAWQLKEMFMRAEDFQSAAQDLQLLRVTKELQGYLGETDQRQSKNQEITTLEKTIEKYSAMHNRKVSDKKRTIRRLKRQIREKMDQNHKFDDDLEDLALNVAERTQISKKTGGD-EKQGVHDHAMKNIIMRRKFVDLAKTQASQIGVLRAEVERLRMRTFPALLQL 1648
              + + W  G+    VHF+++ TICY  GN +  +NIE      LQ     + V+A N     +AFS+  L   IY+Y+   L + +  L G +  L Y  +SF+  GT LA+ + +P  +L+LWNW+ +   C         +++ FNP++W QL   +  TV  W +E+ N+    +   + LP +DG+F   F E D      S P        L  +AIAGL G+  + F   +D     H T  CW P + L I C  G L+  + +   V++++  +  + L+     + + L  +K+G+ AS  DG +Y   +    + ++  +   + V ++ FSPNY  L++    GS+ +   G+E  L+ ++ D C G+   I  ++   ++       G I ++   D   + K  L +  T LAC P+S +  VGT  G +  I V + ESP+ V++  L E  V+ +  D+ G  ++  + +G +F  N   SS F I G+ +V  +++ +   +L + D  +    VL  L  +G        +EM     L+   S+ F D+  +LKD  I K  + L+  +   ++   ++  +G   Q   +  Y L +++ +       +L       +     G + LS H  WL+T +  G+  +R V  +      ++ +++  GI   ++S D Q ILV  R  G +   KW     G   A+  ++  + LL  +    +KE+  +    K+ +  +LG + E                         W+ Q  Q++ KKE   +   +  +K  I +L K +L+MM  ND+L +I KLD+ EF +D EE   L    ++ + ++  + E+ + A+ YL  L+K+ECW+ M  KG+ +  FH    VEN+ M+ RT EE++EL+ V QQ +IE      RK  +  E  S   L++++ +  D +++     +K      Y  GSL+ ++GV   L+ SQ  LH+R +K +QI LLKD +YK+K  FN  F+  Y  K+ E+ R+ ERN RI++I+ DL+L E + + E    E+PE    V D EIT  K++    K + E I   E+E  L     + R RAL  MM G LE   ED L+  +  P FM KP   WTE+E K  K+YE+K  EL+EER+KYRKSLE ELKKLQ +  +ST  FDE L  LF++++K + V  QEELKI  LA S+L+DEEL + E  L   L +K+ EK Q+S AV  +R  ++  K+ Y+ L+A+DK +D+ F+KEFSE+  H +D+LY+LFK+RPR  +      +  ++  S  P      F + P S +    A A L +AM ELDN  +MPE +D   W    M RR KVE EQ++K  A  + ++ +FLQK+++ +E+++ ++E+ F E+  L+EE++RF LNL +Q+LLKQGQ+E+ N + V +Y+D++LI+++ IEDLN+VI+T G+ K++SM ESK+  K I  + W+ K+M M  ED    A D+Q+L  +++ Q YL E +     + +I  +E+TI     MH + V + K+ +++L +   +K   N+    +L +  + V+ER  I    G     + +     +N++ ++K  +++K QA QI +L+ EVERLRM+TFPAL+Q+
Sbjct:   17 ASLSVRWVQGFPKQNVHFVNDNTICYPCGNYVIFINIETKKKTVLQCSNGIVGVMATNIPCEVVAFSDRKLKPLIYVYSFPGLTRRT-KLKG-NILLDYTLLSFSYCGTYLASYSSLPEFELALWNWESSIILCKKSQPGMDVNQMSFNPMNWRQLCLSSPSTVSVWTIERSNQEHCFRARSVKLPLEDGSF---FNETDVVFP-QSLPKDLIYGPVLPLSAIAGLVGKEAETFRPKDDLYPLLHPTMHCWTPTSDLYIGCEEGHLLMINGDTLQVTVLNKIEEESPLDRRNFISPVTLVYQKEGVLASGIDGFVYSFIIKDRSYMIEDFLEIERPVEHMTFSPNYTVLLIQTDKGSVYIYTFGKEPTLNKVL-DACDGKFQAIDFITPGTQYFMTLTYSGEICVWWLEDCACVSKIYLNTLATVLACCPSSLSAAVGTEDGSVYFISVYDKESPQVVHKAFLSESSVQHVVYDQQGIFLLVGTAEGKVFIINANSSSSFQIIGFTEVAKDILQISTVSLLETDIVEVM--VLSSLPEAGRSR-----LEMFTLPTLLPQVSTTFADERGRLKDEIIHKYLYELEHALSSAVLGFQSNQIYGFCSQVPYICSYLLPEEEHTGI----YILKPYKKVQSRQYGPGLLYLSSHGLWLITIAKCGILCIRDVYTLETFAWCRSHSHQGHGIQSMRISMDGQNILVNGRDDGTLVYLKWK--RFGGHLASEILDYYQKLLISLSSAMDKENHYLSTTPKVSV--DLGSDSEHTKQKASTDLSQDELVLTDVKKEIPWIQQKSQEAIKKEVNLFSKKRKEIKQGIKSLSKTILNMMEENDKLENIAKLDQQEFGLDLEELERLHDESQEEVAKMIKDVEMHNLAKSYLAELIKEECWNSMAVKGRALKCFHIPCVVENFPMKARTVEELKELERVLQQKKIEAECLKLRK--EIVEAQSGVKLIKQRHEEDDEEEEEEDKTVKYSNLPNYLLGSLSTDFGVDTSLLSSQLELHSREEKINQIILLKDIIYKVKTVFNNEFDAAYKQKEFEIARVKERNVRIREIILDLELEEAVWQPEFEDCEKPERTLVVQDEEITAHKHIKPWHKAK-ELIVNHEKEHWLLIQDASTRLRALMDMMGGVLEVKKEDILRMVIPQPAFMAKPDAVWTEEERKQFKDYEKKVKELNEERDKYRKSLEAELKKLQNSIQESTQAFDEHLKRLFERRVKAEMVTNQEELKISNLAFSLLLDEELSSREKFLNNYLTRKQHEKSQTSEAVRKSREDLDVCKEHYDNLLAEDKVMDRSFKKEFSEIPGHQVDILYKLFKRRPRISKQ-----KTHSETTSVVP------FGELPGSGKLNKDAFAQLMKAMDELDNISNMPEGLDPLVWNHFCMTRRAKVENEQKVKQKAADLLEMATFLQKRVEEEEKVQQEIERVFHELILLQEEKVRFQLNLTIQILLKQGQVELENFQLVLEYSDAILINKNIIEDLNSVIRTQGQKKVASMMESKDVHKRILQIEWEHKKMEMEREDLNQKAWDIQMLFFSRDRQKYLNEPNYEALISIQIGIMEQTIAVLDKMHKKNVENCKKLLKKLGKFSNQKDIANYALSCNLREELVAVSERKDICNAMGSKLTCEKIVKERYENMMQQQKLTNISKQQAEQISILQTEVERLRMKTFPALVQM 1665          
The following BLAST results are available for this feature:
BLAST of TCONS_00008418-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CFA430.000e+032.46Cilia- and flagella-associated protein 43 OS=Homo ... [more]
back to top