TCONS_00008024-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008024-protein
Unique NameTCONS_00008024-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008024-protein ID=TCONS_00008024-protein|Name=TCONS_00008024-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MSKASERQAESSYRSRGKRIKPAVCDRRENQNKLATIIKMAVNVVSTINT
DHEDMIHDAQMDYYGRKLATCSSDRSVKVYEVTGDSYKLISDLKGHDGPV
WQVAWAHPMYSNLLASCSYDRKVIIWKESGDGYQILFDSQHHDSSVNSIC
WAPHEYGLMLVCGASDGAVSVVSLVDGNWEVEKIPNAHSCIGCNAVSWAP
PVQCQRTDKDTDGTGFVYKKRIVSGGCDNLVKIWAYSDTEGKWLEEDTLD
AHSDWVRDVAFAPNCGQENFILATCSLDCRVIIWRKNEKEGSGWTHQVLH
KFNEAIWHVSWSLAGNILAVSGAENKVRVYFSL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004518XLOC_004518Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008024TCONS_00008024Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 41..81
e-value: 0.0094
score: 25.2
coord: 132..173
e-value: 0.085
score: 22.0
coord: 86..127
e-value: 4.1E-8
score: 43.0
coord: 242..285
e-value: 6.6E-4
score: 29.0
coord: 178..235
e-value: 2.0
score: 15.1
coord: 292..331
e-value: 0.61
score: 18.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 89..127
e-value: 3.2E-4
score: 21.3
coord: 248..284
e-value: 0.029
score: 15.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 93..127
score: 9.773
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 249..284
score: 8.804
NoneNo IPR availableGENE3D2.80.10.50coord: 256..280
e-value: 3.1E-6
score: 26.8
NoneNo IPR availableGENE3D2.80.10.50coord: 19..142
e-value: 2.3E-20
score: 72.1
NoneNo IPR availableGENE3D1.10.10.670coord: 281..331
e-value: 4.0E-7
score: 29.3
NoneNo IPR availableGENE3D2.80.10.50coord: 230..255
e-value: 7.9E-5
score: 21.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 143..229
e-value: 1.6E-9
score: 36.6
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 49..333
score: 18.115
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 50..330

Blast
[Close]
BLAST of TCONS_00008024-protein vs. Swiss-Prot (Human)
Match: SEC13 (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 350.903 bits (899), Expect = 5.118e-121
Identity = 168/290 (57.93%), Postives = 218/290 (75.17%), Query Frame = 0 
Query:   42 VNVVSTINTDHEDMIHDAQMDYYGRKLATCSSDRSVKVYEVTGDSYKLISDLKGHDGPVWQVAWAHPMYSNLLASCSYDRKVIIWKESGDGYQILFDSQHHDSSVNSICWAPHEYGLMLVCGASDGAVSVVSLV-DGNWEVEKIPNAHSCIGCNAVSWAPPVQCQRTDKDTDGTGFVYKKRIVSGGCDNLVKIWAYSDTEGKWLEEDTLDAHSDWVRDVAFAPNCGQENFILATCSLDCRVIIWRKNEKEGSGWTHQVLHKFNEAIWHVSWSLAGNILAVSGAENKVRVY 330
            V+V++T++T HEDMIHDAQMDYYG +LATCSSDRSVK+++V      LI+DL+GH+GPVWQVAWAHPMY N+LASCSYDRKVIIW+E    ++   +   HDSSVNS+CWAPH+YGL+L CG+SDGA+S+++   +G WEV+KI NAH+ IGCNAVSWAP V          G    Y KR  SGGCDNL+K+W   + +G+W EE  L+AHSDWVRDVA+AP+ G     +A+CS D RV IW  ++   + W+ ++LHKFN+ +WHVSWS+  NILAVSG +NKV ++
Sbjct:    2 VSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT-IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK-EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
The following BLAST results are available for this feature:
BLAST of TCONS_00008024-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEC135.118e-12157.93Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
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