TCONS_00007743-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007743-protein
Unique NameTCONS_00007743-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length140

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007743-protein ID=TCONS_00007743-protein|Name=TCONS_00007743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MTIYNLYIFDRNGICLYYHDWQRKKSSNLPRDEEQKLMYGMIFSLKSFVT
RMSPMDTKDAFGSYRTSTYKLNYLEVPTGLKIVLNTDLNIGKIDDVLHEI
YKIYVDYVVKNPLTEMGEPIESDLFVSKLNNYVQNQSIYF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004390XLOC_004390Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007743TCONS_00007743Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007233TRAPPC
IPR011012Longin-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0030008 TRAPP complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 3..136
e-value: 6.4E-63
score: 225.0
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 3..135
e-value: 1.0E-40
score: 138.9
NoneNo IPR availableGENE3D3.30.450.70coord: 1..139
e-value: 6.8E-45
score: 152.2
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 1..135

Blast
[Close]
BLAST of TCONS_00007743-protein vs. Swiss-Prot (Human)
Match: TPPC1 (Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.566e-61
Identity = 78/136 (57.35%), Postives = 114/136 (83.82%), Query Frame = 0 
Query:    1 MTIYNLYIFDRNGICLYYHDWQRKKSSNLPRDEEQKLMYGMIFSLKSFVTRMSPMDTKDAFGSYRTSTYKLNYLEVPTGLKIVLNTDLNIGKIDDVLHEIY-KIYVDYVVKNPLTEMGEPIESDLFVSKLNNYVQN 135
            MT++NLY+FDRNG+CL+Y +W RKK + +P++EE KLMYGM+FS++SFV++MSP+D KD F +++TS YKL+Y E PTG+K+V+NTDL +G I DVLH IY  +YV+ VVKNPL  +G+ ++S+LF S+L++YV++
Sbjct:    1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRS 136
The following BLAST results are available for this feature:
BLAST of TCONS_00007743-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPPC18.566e-6157.35Trafficking protein particle complex subunit 1 OS=... [more]
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