TCONS_00007456-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007456-protein
Unique NameTCONS_00007456-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length681

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007456-protein ID=TCONS_00007456-protein|Name=TCONS_00007456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=681bp
MDLNFDLDLDNGSSSQADGDVDICRVCRMEATQDRPLHYPCVCTGSIKYI
HQECLVQWLTHSKKEYCELCNHKFIFKPVYAADMPPSIPPQELLHGLGKN
ILRALRFWLHYTLVVVAWLGVVPLTAYRIYKCLFSGSLHSLLTLPMDMLS
FENAFTDCLFGIVVVASSVGGFILLLWLREQILVHGGPEWLVEAEGGPHP
QFDAMVVNFFQNQLWGGDAGVPQLPQQNNEDGEPVENNEAEEGDDPPPLD
QNVNEEGERPRIPVQDHFHLEADADIQEDHYQLPDDENDRYNAENGVEDD
QNNQQNVEPHPPPLPPPPQEEPVAMDDDNVLPNDVGGGAGAEEAGWNPDA
IMEDLTWEKFLGLDGSFIFLEHVFWIISLNTSFVLVFIFCPYHFGEMILN
LFGFDDKVFTGTAVDGMFVLNIGYVAIAGLLILLHTLLRYTSLKRLRRTI
GLCYTVLKVTLLMTIEIGIFPLIIGWWLDICSLPLFAITTKDRKDSFLYA
PATATFLHWLVGMLYVFYFAAFIMLLREVLRPGVLWFLRNINDPQFHPVR
EMIQLSVMRHTRRVALSMVVFGTTVLVIIWLPVQLVKRVTNGFIPFNVSL
SSDAPISEMSLELLLLQVILPAFLEQGHARRWLKSFIQYWSKAVSYILDT
RSYLIGDIEIKALPPQSVSSYSFFSLKCFYV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004206XLOC_004206Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007456TCONS_00007456Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 23..71
e-value: 8.4E-20
score: 81.8
IPR011016Zinc finger, RING-CH-typePFAMPF12906RINGvcoord: 24..70
e-value: 6.0E-15
score: 55.0
IPR011016Zinc finger, RING-CH-typePROSITEPS51292ZF_RING_CHcoord: 16..77
score: 21.832
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 17..77
e-value: 4.7E-16
score: 57.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 283..345
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..256
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 20..75

Blast
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BLAST of TCONS_00007456-protein vs. Swiss-Prot (Human)
Match: MARH6 (E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1 SV=2)

HSP 1 Score: 563.533 bits (1451), Expect = 0.000e+0
Identity = 319/641 (49.77%), Postives = 408/641 (63.65%), Query Frame = 0 
Query:   22 DICRVCRMEATQDRPLHYPCVCTGSIKYIHQECLVQWLTHSKKEYCELCNHKFIFKPVYAADMPPSIPPQELLHGLGKNILRALRFWLHYTLVVVAWLGVVPLTAYRIYKCLFSGSLHSLLTLPMDMLSFENAFTDCLFGIVVVASSVGGFILLLWLREQILVHGGPEWLVEAEGGPHPQFDAMVVNFFQNQLWGGDAGVPQLPQQNNEDGEPVENNEAEEGDDPPPLDQNVNEEGERPRIPVQDHFHLEADADIQEDHYQLPDDENDRYNAENGVEDDQNNQQNVEPHPPPLPPPPQEEPVAMDDDNVLPNDVGGGAGAEEAGWNP---DAIMEDLTWEKFLGLDGSFIFLEHVFWIISLNTSFVLVFIFCPYHFGEMILNLFGFDDKVFTGTAVDGMFVLNIGYVAIAGLLILLHTLLRYTSLKRLRRTIGLCYTVLKVTLLMTIEIGIFPLIIGWWLDICSLPLFAITTKDRKDSFLYAPATATFLHWLVGMLYVFYFAAFIMLLREVLRPGVLWFLRNINDPQFHPVREMIQLSVMRHTRRVALSMVVFGTTVLVIIWLPVQLVKRVTNGFIPFNVSLSSDAPISEMSLELLLLQVILPAFLEQGHARRWLKSFIQYWSKAVSYILDTRSYLIGDIE 659
            DICRVCR E T ++PL++PCVCTGSIK+IHQECLVQWL HS+KEYCELC H+F F P+Y+ DMP  +P Q++  GL  +I  A+R+W HYTLV  AWLGVVPLTA RIYKCLF+GS+ SLLTLP+DMLS EN   DCL G  VV  ++  FI L+WLREQI+  G P WL  A     P F+A      QN+   G              G   EN  A++  +PP  +  V   GE P          +A+ + +++  +      D  +A NG +DD N                                           WN    D   E+LTWE+ LGLDGS +FLEHVFW++SLNT F+LVF FCPYH G   L   GF++ V   +  +G+    +GY+ +A  LI+ H L       R RR +G+CY V+KV+LL+ +EIG+FPLI GWWLDICSL +F  T KDR+ SF  AP T  FLHWLVGM+YVFYFA+FI+LLREVLRPGVLWFLRN+NDP F+PV+EMI L + RH RR  LS++VFG+ VL+++WLP++++K V   F+P+NV L SDAP+SE+SLELLLLQV+LPA LEQGH R+WLK  ++ W+    Y+LD  SYL+GD E
Sbjct:    7 DICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFTGSVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAA----PPFNA--AGHHQNEAPAG--------------GNGAENVAADQPANPPAENAVV---GENPDAQDD-----QAEEEEEDNEEEDDAGVEDAADANNGAQDDMN-------------------------------------------WNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGHFSLVGLGFEEHV-QASHFEGLITTIVGYILLAITLIICHGLATLVKFHRSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRIIKSVLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQE 575
The following BLAST results are available for this feature:
BLAST of TCONS_00007456-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MARH60.000e+049.77E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens... [more]
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