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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00007404-protein ID=TCONS_00007404-protein|Name=TCONS_00007404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=3392bp
QNISSEQDCFQKCLSSPSCYEISYIASSKECILFDGKTAPVMISNENSVS
YICKAIAASDKPLYYTITINGYQPLQQNLTIIDTISNQSLPFESRDPYFQ
SVINTTTTSPPLLNYSSPLYLPPGQHLIYVTQTIYSTMYNFNETGEILEI
PDTHHQSFYRDVIGPVKNVVLKIKEPSTGNLTDSQIIVKTGVSVDALISI
GFGTGIKLHLVESFQPFAEPNIETTENFDFFFLDIIEREEAGASPSIMMS
SDHIQNTSFYDTAKYQGQYYAFEDSLSYVSSQSSDHIYFESGQHVGLVFS
FMDRYSLGTLVSEKEDNVLNTVELDVLEVGILKLCVLKLTTDGFEYVQIL
DDIPLNKTGLQVISISDIFHHSIVIPPQTFMGILYLNENSNGGINYAKIN
SMLGSEVKTDKITPSFATTFQLKPLSDDFFTINNSVPYPIGLPLYLKIRF
FFTYPFQYTHTMVKTQPGDLRFSADIRNVLNEDDPIKTSVTVQYQEPIVN
ITFVRDKPKPSYGLFEDVFFPDIVAISTTFTNGSHLNYRYIITSDNGFAK
VLDTNDAIIEVTYPGIYNVRAELSNNVSSATEYTTFSVLNAISKSEQDFS
IITSKAIVAKNENVTITINMKKGTNVTMVIDFGDNYTDTRYNVEGFDNLE
IQKKYNTCGTYNITFKTFNAISSSNRSTIVQVACPFKGFDLNASPKSGPN
YTPQVAIGQQLILKVLIEEGSFAVFTIDWGDQSDLLVDDRNAEAVVPVSF
NRFHVYSEINIYNITVIANNTNQEHHRTIQVNVTKCRDPSLWFAHGSLDS
PIKYSRDSVIRLTAYITWNLEPDCSAANENFKITYWKDLTFDERQDIHNV
TIDTKSITYTMKQNPGFGYHKIGLFVRKYAKFEHWASHIKILRKHLHVYI
IGDTYRVVPYKVNVAKPTEDENDGETTTSRVWNNFTLDASESNDPNFVNQ
SLVTFEWKCRISNMTSAAQFNVPTNKPCNRRDYDSLGDYIILKERPREIK
LSTDGFVEGLAYDFQVTITSDGVSSNYNQTIKFVSGEPPNILLKCASNCG
EKVNLRERLVIQYHCDDCPSNVRLISAWKVFEGDYPNPWINPNKTKTGFK
EPNLVIRENELTQTTRYELQLRVHFEGSNQSISTFIMKVETGRTPSGGTC
VVSPLSATVGESLRVECNGWQNEDGIIRYMFYYDIGSEQFDSSTSTLVKD
LPLLNTGSEHISSLQLDLPIGLKKRNYTITVVSKVVNEYGQYADIYNDVQ
IFPIISQIETSQNKGSEETNQTRQEQVKKITSTIENILDKPAYTIQASST
KAVVINSLLKEMSQDVVDEEKTEIKDGEAEETKNADVIKEGEIVKESEKV
NEPIDLEEEKEKVVNQTQYIQETKQRLLENLSEQKVKSVGEFKVLTDAVA
AITEDNINQQSRNIVDQMLTDSLKEMEMFVASDKSFGAKQLEQTMQSTFT
ALSNIMKQEKVVDTNTSTSHSNTIDHALDILLMRKVAGEEAAIGRTETFS
FSVEKRLPYNLSNAVFEGEDATAGDGSPLSIGFRLPDSLFEDRKYPTGEL
SFSRIAYDSNIFVPKTPENKVNTGDSKLPKINTGTVASLSIKLGKEALTF
TNLSSPIKMKLKSAKEKDLLTTNIKMFLPGQFYFANVSKISTDCDFVVAL
SDVNIHDTTDKNVTLHFYARIGEPPTALENDIHLAFHINPKNSHNLVNCT
EDEISMDQIDSNLEDLESAVTELTKSGFIISNLTQFLDNTNFSDYHKNTS
VHFAFIYEGPVPPNMEIINPYTYDVLDAKGVFQVKLNIYCVDCKYWDVLT
STWRTNGVKLDLNTTNLDITGCTTNHLTSFGNFFVSPNPLTPIGIAQIRE
GFILLAVIFSILMIYFVGLLFTRRADRRDITKVGVTPLPDNKPEDRYLYE
VTVYTGGRAGAGTISNVFINIKGDLDESGVRQLRDDERQPFQQSSSDVFI
LSTPHSLGELVFIHLWNDNAKDDWYVRNVDIIDLQTDQKFTFIVGQWLSV
YRDEEIKVECIVPLATEVELQDFNYLFVNSAKKEMSDSHIWLSIYARPPT
SPFTRCQRLSVAISLVLTVMLANILFYGREAPATPATENKIGNFSFTWQQ
VYVGIIGALITIPVNVILVGLFKTIDPYSRSKTSKRKIGNNEISSSSEGE
SSLSDEDGEFGRHQDGSRDELDSTSPSRGLVSGKRKTSTHLKIESSIRKM
SGKSRRAGSGPRHSIRRSSKSEKGPRPMRVKQMVKEQEKQKKKNQKKKPF
KFPHWVLYPTWGLCLLTIFGSAGLITYYGFVFGNNKSINWLASVAVGIIQ
DVILMQPLKVFVMSLVVAKFYKKLENKEQENLNKDAKKLAKDQKWLHRLE
NESILQRTRTDFVKPPPKLKLKKMRTIRFKELKMKSILRELVLYLVYALI
VSMIGYFARDTSAFQLTRNIDYMLTLKEAPERPKKEVVYTYKCNETIIVE
KKKYFGNCSGLNETEISNKTFTVTNMEDFESRTIFPKVTRDKDIWDYLEQ
VLLPQLYPQRWYTSLDPRHQGDYDVWNFPSKLYTNDLNTKLLTGARIRQL
RSKKMDCPITKVFPKKASSFQCHNEYRFFDQEDRDFLFTWDQPYDYPTNT
KHIPHHKPWRYHKWDELDTYPIPAEYNTYSGGGYIIELFPKNQTRNEDNK
AFLDQLKEKRWIDQYTRAVIVEMALFHPATTYFDSVNIVFEKPATGGVVL
YQTVITFKLYRYTSSYTFFVILSEVLFLLYTILFCIREARIIYKLRWKYF
KAFWNLIEFSNLILSLVTVILYLYRDYYTRQTLKEIPGKVPQKYVNLYFA
SQLDFLLTYIVALICFCVTVKFIKLLRFNKRISMLSSTLRRAGFPLLMFA
ITFGLVIIAFTLLAHLTFGNYLDGYKTISNSFSSIISLLLGKFSYHQFDE
VNEYLGPAFFFGFNIFVNLIVMNMYISILNDSITEVRFEVAQQKNEYEMI
DYTWDKFKGLLGFKGSNRSEEIENALEGDSSARRVEPPERRLIPDDLAMD
SARSTKNLLHEGHEVAETSFMSNKDEKENLNEEEDVFVNERSSLVGSGSQ
TSIPRRKRSSVKISTTEVVEFVPSPEVPKRGRKISSYDIRNRRQMVRRES
LVSRSGSRPGSKTRDSSSMIGPKQSRGSPVVKSRKSSVVYTEITDFVPMR
RRAGTGNMPDASVIEEHLNWRKENRKLTRTENKSRRNSSSTDNDTDEEIF
AMHKALLKHKPKSPCPGPQNVVPPLDLNQVEPKRRETISSVASSIDSVIP
TDRIIQNLKEQEDLKRSEKDKNHKKKRRNLFTKQSVLSTVGEFSESPTKK
SYMSIKSHLTLSDLHFQIDDLSNDMSDNEASKTADQFILAIDNIFSMKKL
QQNGSNETTANLTEKTGPSTKKRKKSGKGKQKKMKKKAPPKL Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1356..1376 |
| None | No IPR available | COILS | Coil | Coil | coord: 2322..2342 |
| None | No IPR available | COILS | Coil | Coil | coord: 1706..1726 |
| None | No IPR available | COILS | Coil | Coil | coord: 3258..3278 |
| None | No IPR available | GENE3D | 1.10.287.70 | | coord: 2659..2938
e-value: 4.2E-7
score: 29.1 |
| None | No IPR available | GENE3D | 3.50.4.10 | | coord: 1..55
e-value: 0.0022
score: 17.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3351..3392 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2131..2247 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3012..3060 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3075..3137 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3260..3279 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3175..3196 |
| None | No IPR available | SUPERFAMILY | 81324 | Voltage-gated potassium channels | coord: 2710..2772
coord: 2909..2934
coord: 2811..2871 |
| IPR001024 | PLAT/LH2 domain | SMART | SM00308 | LH2_4 | coord: 1897..2010
e-value: 7.8E-5
score: 24.5 |
| IPR001024 | PLAT/LH2 domain | GENE3D | 2.60.60.20 | | coord: 1896..2022
e-value: 1.2E-28
score: 99.2 |
| IPR001024 | PLAT/LH2 domain | PFAM | PF01477 | PLAT | coord: 1899..2004
e-value: 8.8E-16
score: 58.4 |
| IPR001024 | PLAT/LH2 domain | PROSITE | PS50095 | PLAT | coord: 1897..2012
score: 30.386 |
| IPR001024 | PLAT/LH2 domain | SUPERFAMILY | 49723 | Lipase/lipooxygenase domain (PLAT/LH2 domain) | coord: 1896..2003 |
| IPR002859 | PKD/REJ-like domain | PFAM | PF02010 | REJ | coord: 889..1274
e-value: 5.2E-49
score: 167.1 |
| IPR013122 | Polycystin cation channel, PKD1/PKD2 | PFAM | PF08016 | PKD_channel | coord: 2485..2936
e-value: 3.3E-85
score: 286.2 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 599..684
e-value: 8.9E-5
score: 22.3
coord: 508..589
e-value: 0.18
score: 11.7 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 692..788
e-value: 0.043
score: 13.6 |
| IPR000203 | GPS motif | PROSITE | PS50221 | GPS | coord: 1790..1840
score: 9.246 |
| IPR003609 | PAN/Apple domain | PROSITE | PS50948 | PAN | coord: 1..56
score: 8.176 |
| IPR000601 | PKD domain | SUPERFAMILY | 49299 | PKD domain | coord: 605..685 |
| IPR000601 | PKD domain | SUPERFAMILY | 49299 | PKD domain | coord: 655..786 |
Blast
BLAST of TCONS_00007404-protein vs. Swiss-Prot (Human)
Match: PK2L1 (Polycystic kidney disease 2-like 1 protein OS=Homo sapiens GN=PKD2L1 PE=1 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.947e-54 Identity = 179/709 (25.25%), Postives = 311/709 (43.86%), Query Frame = 0
Query: 2380 KELKMKSILRELVLYLVYALIVSMIGYFARDTSAFQLTRNIDYMLTLKEAPERPKKEVVYTYKCNETIIVEKKKYFGNCSGLNETEISNKTFTVTNMEDFESRTIFPKVTRDKDIWDYLEQVLLPQLYPQRWYTSLDPRHQGDYDVWNFPSKLYTNDLNTKLLTGARIRQLRSKKMDCPITKVFPKKASSFQCHNEYRFFDQEDRDFLFTWDQPYDYPTNTKHIPHHKPWRYHKWDELDTYPIPAEYNTYSGGGYIIELFPKNQTRNEDNKAFLDQLKEKRWIDQYTRAVIVEMALFHPATTYFDSVNIVFEKPATGGVVLYQTVITFKLYRYTSSYTFFVILSEVLFLLYTILFCIREARIIYKLRWKYFKAFWNLIEFSNLILSLVTVILYLYRDYYTRQTLKEIPGKVPQKYVNLYFASQLDFLLTYIVALICFCVTVKFIKLLRFNKRISMLSSTLRRAGFPLLMFAITFGLVIIAFTLLAHLTFGNYLDGYKTISNSFSSIISLLLGKFSYHQFDEVNEYLGPAFFFGFNIFVNLIVMNMYISILNDSITEVRFEVAQQKNEYEMIDYTWDKFK--GLLGFKGSNRSEEIENALEGDSSARRVEPPERRLIPDDLAMDSARSTKNLLHEGHEVAETSFMSNK---------DEKENLN-----EEEDVFVNER-----SSLVGSGSQTSIPRRKRSSVKISTTE 3067
+EL +K+ LREL++Y+V+ + + ++ Y +SA Y Y T++ ++ F T + S F ++ D WD+ + LL LY +WY + H S +Y ++ LL R+RQL+ + C + + F + S C++ Y +E F P++ W YH DEL + +YSGGGY ++L Q E +A L+E W+D+ TR V ++ ++++ F + +V E PATGG + + T KL RY S++ FF++ EV+F ++ + + E ++ R +Y + WN+++ ++LS+V V +++R + + ++ + P Y + F + + A+ F +K K + FNK ++ LSSTL R +L FA+ F +V A+ L +L FG ++ + T + ++LG F Y+ D N LGPA+F + FV +++NM+++I+ND+ +EV+ E+A QK+E ++ D + L R +++ L+G + E D + + L H HE+ E + K DEKE EEE V +N S+V S S P R+ +S E
Sbjct: 93 RELYIKTTLRELLVYIVFLVDICLLTYGMTSSSA-------------------------YYY----------------------TKVMSELFLHTPSDTGVS---FQAISSMADFWDFAQGPLLDSLYWTKWYNNQSLGHGSH-------SFIYYENM---LLGVPRLRQLKVRNDSCVVHEDFREDILS--CYDVYSPDKEEQLPF-----GPFN----------GTAWTYHSQDELGGFSHWGRLTSYSGGGYYLDLPGSRQGSAEALRA----LQEGLWLDRGTRVVFIDFSVYNANINLFCVLRLVVEFPATGGAIPSWQIRTVKLIRYVSNWDFFIVGCEVIFCVFIFYYVVEEILELHIHRLRYLSSIWNILDLVVILLSIVAVGFHIFRTLEVNRLMGKLLQQ-PNTYADFEFLAFWQTQYNNMNAVNLFFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAVMFFIVFFAYAQLGYLLFGTQVENFSTFIKCIFTQFRIILGDFDYNAIDNANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEELAGQKDELQLSDLLKQGYNKTLLRLRLRKERVSDVQKVLQGGEQEIQFE-------------DFTNTLRELGHAEHEITELTATFTKFDRDGNRILDEKEQEKMRQDLEEERVALNTEIEKLGRSIVSSPQGKSGPEAARAGGWVSGEE 706
The following BLAST results are available for this feature:
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