TCONS_00007391-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007391-protein
Unique Name	TCONS_00007391-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1230

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007391-protein ID=TCONS_00007391-protein|Name=TCONS_00007391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1230bp
MTPGIDNLPSLSPYSTFGSKFTQSFQQFVKDIADSKSKTEEDRIISLEVE
RLKIAILKPVNSEKQRKEQFVKLIYCDMLGKDVSFANMETVKNAQQQDLM
YKRVSYTALGLFLNEENETERMMNMSSIQRDLQSSNVLNICFGLFAASKL
VYSDMMQAVLPLLQNLLKDKRDVVRKKTLMVFYRFWKLNPDAFDFVSTFN
QYLFDTDPSVMQSSLIAYYDLIQCDPFKYKKLTSTFVNILKQILDHRLPE
EFNYKGYAAPWMQILLLKILALLGTDDLGESKKMYEILRQCLETTNTDQT
IGCSVVYECLLTISTIYTDKSLMERATNKASVFITSEDYNMKYLGIKALS
DFITTDFDYAAKHQQVIINCLQDHDDSLKRKTLELLYRMANVSNVVTICE
EMIKYLRSTMDDYIRSTLVTQITTLADKFAPDNEWFIMTMNEVFELGGHL
VQEDVAHNIMRLIGEGIDDVNSSGDDNDSDDVISEATRDLRDHALISYVT
LMDKPCLPDLLVKLVSWVVGEYIEEDMGYDLKSIVEKMTNMIYRPYQCSE
TQAWIITGITKILARSSQPSSLFVDIDISKLGSEARRRYSELKSILKLCN
PVMLSDVLPYDGSCEDIEPDETLGFLDGFVQQALLNGAQPYSSELSQASI
RQEDTEQVHVKRTDLIYVYDAPTIPSKSAPVSSEKKSGEDSLEDVSQYQK
HDQSAILHPSLTPQQGQVPITNLSSNKPGKWQKDRGLVTRSSESDMTSSV
GSPTPSSRDGSSTHETRLDGGRSRNNSSSSSKTSEDKSSGTRSSGKPDKK
EQLAKSLFGGGSQSTKTPSSKRPTSGRGGKRTSSSRSNKNRTDASLLGDF
PSQGDNTPQLLGDNDVSQSNNENDLLSQSLGDNFAIGSALLSQPLGDMNS
LISPTTSPTPPNDLLDGLSLSPMNITQPLSPQFNSNKDAGVVDLMGDMMN
LEQSNSTQHTQESLLLPSSNLSPTNPQESTLLPPSSPPLKTLTPIESTQV
PDHLKNVRSTTVKELASDMCLRISNQFVFQDDKLAVALHVTNKTVNPLKN
LRIVITPPSCLRGTDSELNFQMTDTDLEPNSNFCHVINLTHQSPSPKMAL
NGQVSYKDFTNTEKKVFINLNIPWSAILRKLDLQMAAFEEGWRNKSLHDL
KQNIRVSMTLERLMSLFEQWNINLIKEIAGEIIASSTVLKKETVLFHFNI
KQHGSVEVRIKSSSERLNDCIYKFIHSEIS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004158	XLOC_004158	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007391	TCONS_00007391	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR028269	AP4E1_C
IPR011989	ARM-like
IPR013037	Clathrin_b-adaptin_app_Ig-like
IPR002553	Clathrin/coatomer_adapt-like_N
IPR016024	ARM-type_fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0030131	clathrin adaptor complex
GO:0030117	membrane coat

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport
GO:0016192	vesicle-mediated transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030131	clathrin adaptor complex
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028269	AP-4 complex subunit epsilon-1, C-terminal	SMART	SM01356	AP4E_app_platf_2	coord: 1129..1230 e-value: 0.0064 score: 13.4
IPR028269	AP-4 complex subunit epsilon-1, C-terminal	PFAM	PF14807	AP4E_app_platf	coord: 1133..1225 e-value: 4.2E-10 score: 39.8
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 14..635 e-value: 2.2E-86 score: 290.0
IPR013037	Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain	GENE3D	2.60.40.1150		coord: 1008..1123 e-value: 0.0026 score: 17.1
IPR002553	Clathrin/coatomer adaptor, adaptin-like, N-terminal	PFAM	PF01602	Adaptin_N	coord: 61..463 e-value: 3.1E-69 score: 233.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 676..876
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 954..987
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 900..921
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 24..524

Blast

[Close]

BLAST of TCONS_00007391-protein vs. Swiss-Prot (Human)
Match: AP4E1 (AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=AP4E1 PE=1 SV=2)

HSP 1 Score: 428.713 bits (1101), Expect = 1.848e-130
Identity = 239/652 (36.66%), Postives = 379/652 (58.13%), Query Frame = 0

Query:    3 PGI--DNLPSLSPYSTFGSKFTQSFQQFVKDIADSKSKTEEDRIISLEVERLKIAILKPVNSEKQRKEQFVKLIYCDMLGKDVSFANMETVKNAQQQDLMYKRVSYTALGLFLNEENETERMMNMSSIQRDLQSSNVLNICFGLFAASKLVYSDMMQAVLPLLQNLLKDKRDVVRKKTLMVFYRFWKLNPDAFDFVST-FNQYLFDTDPSVMQSSLIAYYDLIQCDPFKYKKLTSTFVNILKQILDHRLPEEFNYKGYAAPWMQILLLKILALLGTDDLGESKKMYEILRQCLETTNTDQTIGCSVVYECLLTISTIYTDKSLMERATNKASVFITSEDYNMKYLGIKALSDFITTDFDYAAKHQQVIINCLQDHDDSLKRKTLELLYRMANVSNVVTICEEMIKYLRSTMDDYIRSTLVTQITTLADKFAPDNEWFIMTMNEVFELGGHLVQEDVAHNIMRLIGEGIDDVNSSGDDNDSDDVISEATRDLRDHALISYVTLMDKPCL--PDLLVKLVSWVVGEYIEEDMGYDL-----KSIVEKMTNMIYRPYQCSETQAWIITGITKILARSSQPSS---LFVDIDISKLGSEARRRYSELKSILKLCNPVMLSDVLPYDGSCEDIEPDETLGFLDGFVQQALLNGAQPY 641
            PG+   N P   P +   S F+      V+ I    SK EE+++I  E+  LK  +  P  + K  KE  V+LIYC+MLG D SF  +  +K AQQ +L+ KRV Y A+ LF   E+    ++ ++++ +DLQS+N++ +C  L   S++   +M+ AVLPL+++ L+  +++VR+K ++  Y+F  + P+    +   F + L D D  VM +SL  Y  +I+ +   YK LT +FV ILKQ++  +LP EFNY    APW+QI LL+IL LLG DD   S+ MY++L + L     +  +  ++++EC+ T+ +IY    L+E+A      F+ S   N+KYLG+KAL+  I  D   A +HQ  II CL   D  +KR+TLELLYR+ N  N+  I ++M++YL  + ++Y+   LV +I  LA+K+APDN WFI TMN VF +GG ++  D+ +N +RL+ EG DD        +++D      + LR +A+ SY+TL+D   +  P   ++++SWV+GEY      Y L     + ++ K+  ++      SET+AW+I  +TK+ +++   ++   L  +  IS L +  R+   ELK + +  N  ++  +LP D SCED+  D +L FLDGFV + L  GA PY
Sbjct:   13 PGLFLQNQPGGGPAAAKAS-FSSRLGSLVRGITALTSKHEEEKLIQQELSSLKATVSAPTTTLKMMKECMVRLIYCEMLGYDASFGYIHAIKLAQQGNLLEKRVGYLAVSLF-LHESHELLLLLVNTVVKDLQSTNLVEVCMALTVVSQIFPCEMIPAVLPLIEDKLQHSKEIVRRKAVLALYKFHLIAPNQVQHIHIKFRKALCDRDVGVMAASLHIYLRMIKENSSGYKDLTGSFVTILKQVVGGKLPVEFNYHSVPAPWLQIQLLRILGLLGKDDQRTSELMYDVLDESLRRAELNHNVTYAILFECVHTVYSIYPKSELLEKAAKCIGKFVLSPKINLKYLGLKALTYVIQQDPTLALQHQMTIIECLDHPDPIIKRETLELLYRITNAQNITVIVQKMLEYLHQSKEEYVIVNLVGKIAELAEKYAPDNAWFIQTMNAVFSVGGDVMHPDIPNNFLRLLAEGFDD--------ETED------QQLRLYAVQSYLTLLDMENVFYPQRFLQVMSWVLGEY-----SYLLDKETPEEVIAKLYKLLMNDSVSSETKAWLIAAVTKLTSQAHSSNTVERLIHEFTIS-LDTCMRQHAFELKHLHE--NVELMKSLLPVDRSCEDLVVDASLSFLDGFVAEGLSQGAAPY 640

The following BLAST results are available for this feature:

BLAST of TCONS_00007391-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007391-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AP4E1	1.848e-130	36.66	AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=...	[more]

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TCONS_00007391-protein (polypeptide) - C. hemisphaerica