TCONS_00007261-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007261-protein
Unique NameTCONS_00007261-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007261-protein ID=TCONS_00007261-protein|Name=TCONS_00007261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MLSTLRKISSLKQGSKAITQQATRCMSGLGFDLNDEQKGIEELSRKFARE
EMLPVAAEHDKSGEFPWDVFRKAHDIGLLNTGIPTEYGGLGVDGVTSCII
EEEFAYACTGMGTALEGNGLACAPVNIAANDEQKKEYFGRLIAEPLVAAY
CVTEPGAGSDVSGLKTKAEKHGDEWVINGNKMWITGAGVANWFFVLARTD
PNPKAKTGEAFTGFIVEADTPGVIIGRKEWNMGQRCSDTRGVTFEDVRLS
DKNVLGKVGAGFKYAMGAFDKTRPGVASSAVGLAQRALDEAAQYSLQRKT
FGTQIANHQAVSFMLAEMAIGIELSRLMVRKAAWDLDQGRRNTYYASIAK
SFASDIANKSATDCVQIFGGNGFNSEYPAEKLMRDAKIYQIYEGTSQIQR
LIIAREYFELLSKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004079XLOC_004079Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007261TCONS_00007261Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006091Acyl-CoA_Oxase/DH_cen-dom
IPR009075AcylCo_DH/oxidase_C
IPR013786AcylCoA_DH/ox_N
IPR006089Acyl-CoA_DH_CS
IPR009100AcylCoA_DH/oxidase_NM_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0003995acyl-CoA dehydrogenase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003995 acyl-CoA dehydrogenase activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006091Acyl-CoA oxidase/dehydrogenase, central domainPFAMPF02770Acyl-CoA_dh_Mcoord: 149..247
e-value: 3.6E-25
score: 87.9
NoneNo IPR availableGENE3D1.20.140.10coord: 249..414
e-value: 5.0E-57
score: 191.9
NoneNo IPR availableGENE3D2.40.110.10coord: 148..248
e-value: 9.7E-39
score: 131.2
NoneNo IPR availablePIRSFPIRSF016578PIGMcoord: 32..392
e-value: 5.9E-13
score: 46.0
IPR009075Acyl-CoA dehydrogenase/oxidase C-terminalPFAMPF00441Acyl-CoA_dh_1coord: 259..406
e-value: 6.7E-50
score: 169.1
IPR009075Acyl-CoA dehydrogenase/oxidase C-terminalSUPERFAMILY47203Acyl-CoA dehydrogenase C-terminal domain-likecoord: 258..410
IPR013786Acyl-CoA dehydrogenase/oxidase, N-terminalGENE3D1.10.540.10coord: 16..143
e-value: 5.7E-31
score: 106.9
IPR013786Acyl-CoA dehydrogenase/oxidase, N-terminalPFAMPF02771Acyl-CoA_dh_Ncoord: 34..142
e-value: 3.3E-24
score: 85.6
IPR006089Acyl-CoA dehydrogenase, conserved sitePROSITEPS00073ACYL_COA_DH_2coord: 366..385
IPR006089Acyl-CoA dehydrogenase, conserved sitePROSITEPS00072ACYL_COA_DH_1coord: 151..163
IPR009100Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domainSUPERFAMILY56645Acyl-CoA dehydrogenase NM domain-likecoord: 29..270

Blast
[Close]
BLAST of TCONS_00007261-protein vs. Swiss-Prot (Human)
Match: ACADM (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADM PE=1 SV=1)

HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0
Identity = 263/409 (64.30%), Postives = 324/409 (79.22%), Query Frame = 0 
Query:    4 TLRKISSLK---QGSKAITQQATRCMSGLGFDLNDEQKGIEELSRKFAREEMLPVAAEHDKSGEFPWDVFRKAHDIGLLNTGIPTEYGGLGVDGVTSCIIEEEFAYACTGMGTALEGNGLACAPVNIAANDEQKKEYFGRLIAEPLVAAYCVTEPGAGSDVSGLKTKAEKHGDEWVINGNKMWITGAGVANWFFVLARTDPNPKAKTGEAFTGFIVEADTPGVIIGRKEWNMGQRCSDTRGVTFEDVRLSDKNVLGKVGAGFKYAMGAFDKTRPGVASSAVGLAQRALDEAAQYSLQRKTFGTQIANHQAVSFMLAEMAIGIELSRLMVRKAAWDLDQGRRNTYYASIAKSFASDIANKSATDCVQIFGGNGFNSEYPAEKLMRDAKIYQIYEGTSQIQRLIIAREYFE 409
             LR IS      Q +KA  Q+      G  F+  ++QK  +  +RKFAREE++PVAAE+DK+GE+P  + R+A ++GL+NT IP   GGLG+    +C+I EE AY CTG+ TA+EGN L   P+ IA ND+QKK+Y GR+  EPL+ AYCVTEPGAGSDV+G+KTKAEK GDE++ING KMWIT  G ANW+F+LAR+DP+PKA   +AFTGFIVEADTPG+ IGRKE NMGQRCSDTRG+ FEDV++  +NVL   GAGFK AMGAFDKTRP VA+ AVGLAQRALDEA +Y+L+RKTFG  +  HQA+SFMLAEMA+ +EL+R+  ++AAW++D GRRNTYYASIAK+FA DIAN+ ATD VQI GGNGFN+EYP EKLMRDAKIYQIYEGTSQIQRLI+ARE+ +
Sbjct:   11 VLRSISRFHWRSQHTKANRQREPGL--GFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHID 417
The following BLAST results are available for this feature:
BLAST of TCONS_00007261-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACADM0.000e+064.30Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
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