TCONS_00007209-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007209-protein
Unique NameTCONS_00007209-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007209-protein ID=TCONS_00007209-protein|Name=TCONS_00007209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp
MYTCVVIQELIKMNVILRQRLRHLKNSNTTTAGYWLRCMSTLETIELNGR
NYKKDHMTNVPQNIISRLNKQLHNTKDHPLEIVKSKIVDYFHGYFRNRHG
GCVFASIDNISPVVTVQQNFDNLLVPKDHVSRSKNDNYYINDLQMLRAHT
TAHEIDLISSGWNAFLNTGDCYRRDAIDKSHFPVFHQLEGVRIFDDFELF
EETKDNSLRILEKTASMRTEEKQAEHTIDAARITEFNLKYTLMKLVENLF
GDNVEMRWVDAYFPFTHPSWELEVKLNGEWMEMLGCGILEQQILKYAGAG
DRIGWAFGLGLERFAMKLFDIPDIRLFWSEDERFLKQFKTGVDTTFQPFS
KYPPSYKDISFWVNDGNFSSNDLFEIARSVGGDVIEEMTLVDQFVHPKTQ
RESHCYRITYRAMDRTLRDEEVNDVQNKLRSEAAKLLHIELR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004041XLOC_004041Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007209TCONS_00007209Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005121Fdx_antiC-bd
IPR004530Phe-tRNA-synth_IIc_mito
IPR002319Phenylalanyl-tRNA_Synthase
IPR006195aa-tRNA-synth_II
Vocabulary: Biological Process
TermDefinition
GO:0006432phenylalanyl-tRNA aminoacylation
GO:0043039tRNA aminoacylation
Vocabulary: Molecular Function
TermDefinition
GO:0004826phenylalanine-tRNA ligase activity
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0000049tRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006432 phenylalanyl-tRNA aminoacylation
biological_process GO:0043039 tRNA aminoacylation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004826 phenylalanine-tRNA ligase activity
molecular_function GO:0000049 tRNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..27
NoneNo IPR availableGENE3D3.30.930.10coord: 145..352
e-value: 6.6E-46
score: 156.1
coord: 36..144
e-value: 7.0E-23
score: 80.4
NoneNo IPR availableCDDcd00496PheRS_alpha_corecoord: 78..333
e-value: 2.73319E-80
score: 249.0
NoneNo IPR availableSUPERFAMILY55681Class II aaRS and biotin synthetasescoord: 237..339
coord: 83..198
IPR005121Ferrodoxin-fold anticodon-binding domainSMARTSM00896FDX_ACB_2coord: 350..442
e-value: 1.4E-32
score: 124.2
IPR005121Ferrodoxin-fold anticodon-binding domainPFAMPF03147FDX-ACBcoord: 350..442
e-value: 1.5E-22
score: 79.7
IPR005121Ferrodoxin-fold anticodon-binding domainGENE3D3.30.70.380coord: 353..442
e-value: 7.9E-35
score: 118.5
IPR005121Ferrodoxin-fold anticodon-binding domainPROSITEPS51447FDX_ACBcoord: 350..442
score: 23.566
IPR005121Ferrodoxin-fold anticodon-binding domainSUPERFAMILY54991Anticodon-binding domain of PheRScoord: 345..442
IPR004530Phenylalanyl-tRNA synthetase, class IIc, mitochondrialTIGRFAMTIGR00469TIGR00469coord: 43..440
e-value: 1.1E-126
score: 421.0
IPR002319Phenylalanyl-tRNA synthetasePFAMPF01409tRNA-synt_2dcoord: 69..198
e-value: 2.5E-15
score: 56.5
coord: 222..338
e-value: 2.5E-29
score: 102.4
IPR006195Aminoacyl-tRNA synthetase, class IIPROSITEPS50862AA_TRNA_LIGASE_IIcoord: 169..348
score: 10.982

Blast
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BLAST of TCONS_00007209-protein vs. Swiss-Prot (Human)
Match: SYFM (Phenylalanine--tRNA ligase, mitochondrial OS=Homo sapiens GN=FARS2 PE=1 SV=1)

HSP 1 Score: 468.774 bits (1205), Expect = 1.090e-163
Identity = 211/403 (52.36%), Postives = 293/403 (72.70%), Query Frame = 0 
Query:   44 TIELNGRNYKKDHMTNVPQNIISRLNKQLHNTKDHPLEIVKSKIVDYFHGYFRNRHGGCVFASIDNISPVVTVQQNFDNLLVPKDHVSRSKNDNYYINDLQMLRAHTTAHEIDLISSGWNAFLNTGDCYRRDAIDKSHFPVFHQLEGVRIFDDFELFEETKDN-SLRILEKTASMRTEEKQAEHTIDAARITEFNLKYTLMKLVENLFGDNVEMRWVDAYFPFTHPSWELEVKLNGEWMEMLGCGILEQQILKYAGAGDRIGWAFGLGLERFAMKLFDIPDIRLFWSEDERFLKQF---KTGVDTTFQPFSKYPPSYKDISFWVNDGNFSSNDLFEIARSVGGDVIEEMTLVDQFVHPKTQRESHCYRITYRAMDRTLRDEEVNDVQNKLRSEAAKLLHIELR 442
             +EL G++Y +D  +N+ + +++R+ + LHN + HPL ++K ++ ++F+  +  R G  +F+  DN+SPVVT  QNFD+LL+P DH SR K DNYY+N   MLRAHT+AH+ DL+ +G +AFL  GD YRRD ID  H+P+FHQLE VR+F   ELF   KD  SL++ E+++  R+  KQ  HT++A ++ EF+LK TL +L+ +LFGD +E+RWVD YFPFTHPS+E+E+  +GEW+E+LGCG++EQQ++  AGA DRIGWAFGLGLER AM L+DIPDIRLFW EDERFLKQF          FQP SKYP    DISFW+   N++ ND +++ R++GGD++E++ L+D+FVHPKT + SHCYRITYR M+RTL   EV  +   L+  A +LL +E R
Sbjct:   50 VVELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSS--RSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAVINDISFWLPSENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGR 450
The following BLAST results are available for this feature:
BLAST of TCONS_00007209-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYFM1.090e-16352.36Phenylalanine--tRNA ligase, mitochondrial OS=Homo ... [more]
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