TCONS_00006939-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006939-protein
Unique NameTCONS_00006939-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006939-protein ID=TCONS_00006939-protein|Name=TCONS_00006939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp
MKMVRKKKINNTLLPLFHSISIKINVTDRTLEEVAKIMQSSQKLLLKTRS
ALPLPMNASPLIRNYTKKQQKASEDPKNYSSLMKMVSQEDQLSAKKMNRT
ISDPHDDQSSGNHTPVTRERSVSLDHKDKVFTRGQMYRNGPTRSPVYDRK
LPAIPDENTGGGGKSPESEGYHRAFSRASRYQAEKKPEPSTLCPTQPSHV
GAKSPGLFRRNERKKSGEGMFTAPSNDSLSSMSDDENAGDERLHVFPSDN
PTPSDGLKSYTGKLAVSIYKMIGRLSGIEADCYCTIEVDGESKASTQHQK
IKELVNFNESFEIELQKATVLSFFIFHKHGKKSHKLASQSHIYLENVLSQ
SETKKKLLLGTSSHVQMRIKLNFTAAESYTQRSHSLRQNGVFGFNLAKTL
AKEENTIPVIVRKCVEEIEKRALEIVGIYRISGNARKKKHLRAQFEENSL
AVDTSNEHEVDCHVLAGILKDYLRELPNPLISDNMYHNIYNKGCVKNKDQ
NNLLRELLKELPYTNRATLIYIMDHLKRVAAKSEVNKMTHQNLAVCFGPV
MMSSPVATAAMLDFKKQIDALEFLLNIWPVSVELQNGI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003881XLOC_003881Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006939TCONS_00006939Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR000008C2_dom
IPR008936Rho_GTPase_activation_prot
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000198Rho GTPase-activating protein domainSMARTSM00324RhoGAP_3coord: 405..579
e-value: 9.4E-58
score: 207.9
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 408..555
e-value: 4.6E-47
score: 159.5
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 394..582
score: 44.142
IPR000008C2 domainGENE3D2.60.40.150coord: 256..376
e-value: 1.2E-7
score: 31.1
IPR000008C2 domainSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 262..370
NoneNo IPR availableGENE3D1.10.555.10coord: 384..580
e-value: 4.0E-56
score: 189.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..254
NoneNo IPR availableCDDcd00030C2coord: 281..356
e-value: 3.43672E-5
score: 41.2835
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 388..579

Blast
[Close]
BLAST of TCONS_00006939-protein vs. Swiss-Prot (Human)
Match: SYDE2 (Rho GTPase-activating protein SYDE2 OS=Homo sapiens GN=SYDE2 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 3.837e-51
Identity = 114/332 (34.34%), Postives = 176/332 (53.01%), Query Frame = 0 
Query:  281 DCYCTIEVDGESKASTQHQKIKE-LVNFNESFEIELQKATVLSFFIF-HKHGKKSHKLASQSHIYLENVLSQSETKKKLLLGTSSHVQMRIKLNFTAAESYTQRSHSLRQNG---VFGFNLAKTLAKEEN--TIPVIVRKCVEEIEKRALEIVGIYRISGNARKKKHLRAQFEENSLAVDTSNEHEVDCHVLAGILKDYLRELPNPLISDNMYHNIYN-----------KGCVKNKDQNNLLRELLKELPYTNRATLIYIMDHLKRVAAKSEVNKMTHQNLAVCFGPVMMS---------SPVAT-----AAMLDFKKQIDALEFLLNIWPV 580
            D +C I+VD  +KA T     +   ++ + +F IE++ A  L   +F  +   + +++     + L  +   ++T +   L      +  I +  T  E +    H L  N    +FG ++ K + KE     +P++++KC+ EIEKR  ++VG+YR+ G+A  KK LR  FE +S AV        D +V+ G+LKDYLRELP+PLI+  +Y  + +            GC  +   +    +LL  LP   +ATL  ++DHLK VA+  EVNKMT QNLAVCFGPV++S         + V T     A+ LDFKK I+ L +LL +WPV
Sbjct:  701 DVFCAIQVDSVNKARTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFSWEPTPRKNRVCCHGTVVLPTLFRVTKTHQ---LAVKLEPRGLIYVKVTLMEQWENSLHGLDINQEPIIFGVDIQKVVEKENIGLMVPLLIQKCIMEIEKRGCQVVGLYRLCGSAAVKKELREAFERDSKAVGLCENQYPDINVITGVLKDYLRELPSPLITKQLYEAVLDAMAKSPLKMSSNGCENDPGDSKYTVDLLDCLPEIEKATLKMLLDHLKLVASYHEVNKMTCQNLAVCFGPVLLSQRQEPSTHNNRVFTDSEELASALDFKKHIEVLHYLLQLWPV 1029
The following BLAST results are available for this feature:
BLAST of TCONS_00006939-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYDE23.837e-5134.34Rho GTPase-activating protein SYDE2 OS=Homo sapien... [more]
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