TCONS_00006804-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006804-protein
Unique Name	TCONS_00006804-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	479

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006804-protein ID=TCONS_00006804-protein|Name=TCONS_00006804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
MDTVESMEKSPARNGPLSNRIVHFDLKGAPPKISYLLELIPLVRQWGATG
ILVEYEDMFPYKNKLSVLSKPFAYSSDDLKLLQEATKLEGMDYIPLLQSF
GHVEFILKHHQFEHLREASINPMSLCPKHVESLPLIEEIVDQFMQEHPDI
EYLHIGGDEVFCINVCKKCVDSRDSIPKLYLSHMEPLILFIQNKFPTLKL
FVWDDMFREFSVQELEELSPQIIPMVWSYVDYLDSQFPNDMWRRYGSVFE
EIWIATSFKGSSGPTCDLVPIQHHVNNHLSWFNLIESFDQELKVKIKGVA
VTGWSRYDHFATLCELLPAAFPCLVLCLQVLRQGSFTRTLHENVSKSLGY
VNAIPLSGYFNENGTGNFPGSELIGYICQLEFAKRQLLVLQERSDGWMDD
WHTEVTQEVNLGHIDFIYNLVTQIIQLYESIRGPIQECLSTYFYEETALE
VVKSKIDSKLKVINLIMDKVQTVKSFKDK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003804	XLOC_003804	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006804	TCONS_00006804	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015883	Glyco_hydro_20_cat
IPR017853	Glycoside_hydrolase_SF

Vocabulary: **Molecular Function**
Term	Definition
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015883	Glycoside hydrolase family 20, catalytic domain	PFAM	PF00728	Glyco_hydro_20	coord: 112..231 e-value: 3.0E-5 score: 23.5
None	No IPR available	GENE3D	3.20.20.80		coord: 18..323 e-value: 1.8E-44 score: 152.2
None	No IPR available	CDD	cd06565	GH20_GcnA-like	coord: 19..329 e-value: 2.04631E-98 score: 299.892
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 19..322

Blast

[Close]

BLAST of TCONS_00006804-protein vs. Swiss-Prot (Human)
Match: HEXDC (Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=3)

HSP 1 Score: 296.204 bits (757), Expect = 2.818e-95
Identity = 158/472 (33.47%), Postives = 258/472 (54.66%), Query Frame = 0

Query:   16 PLSNRIVHFDLKGAPPKISYLLELIPLVRQWGATGILVEYEDMFPYKNKLSVLSKPFAYSSDDLKLLQEATKLEGMDYIPLLQSFGHVEFILKHHQFEHLREASINPMSLCPKHVESLPLIEEIVDQFMQEHPDIEYLHIGGDEVFCINVCKKCV----DSRDSIPKLYLSHMEPLILFIQNKFPTLKLFVWDDMFREFSVQELEELS-PQII-PMVWSYVDYLDSQ---FPNDMWRRYGSVFEEIWIATSFKGSSGPTCDLVPIQHHVNNHLSWFNLIESFDQELKVKIKGVAVTGWSRYDHFATLCELLPAAFPCLVLCLQVLRQGSFTRTLHENVSKSLGYVNAIPLSGYFNENGTGNFPGSELIGYICQLEFAKRQLLVLQERSDGWMDDWHTEVTQEVNLGH---IDFIYNLVTQIIQLYESIRGPIQECLSTYFYEETALEVVKSKIDSKLKVINLIMDKVQTVKS 475
            P   R+VH DLKGAPPK+SYL E+ PL R  GA G+L+EYEDMFPY+  L +L   +AYS  ++K +     L  ++ IPL+Q+FGH+EF+LKH  F HLRE    P +L P   ESL L+  ++DQ ++ HP  + LHIG DEV+ +   +         ++S  KL LSHM  +   ++ + P++   VWDDM R+    +L     PQ++ P++W Y   LD          +RR G  F ++W A++FKG++GP+  + P++HH+ NH+ W  +  S   +    ++G+ +TGW RYDH++ LCELLPA  P L  CLQ+L +G F   +   V   LG ++++  +    E G G+FPGS ++  + Q+    R  +      + ++  W +   ++  L H   +  I      ++  + ++   ++  L   FY +   E ++  +   L+ +  ++  +  V +
Sbjct:    6 PFQMRLVHLDLKGAPPKVSYLSEIFPLFRALGANGLLIEYEDMFPYEGPLRLLRAKYAYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLREVGSFPCTLNPHEAESLALVGAMIDQVLELHPGAQRLHIGCDEVYYLGEGEASRRWLQQEQNSTGKLCLSHMRAVASGVKARRPSVTPLVWDDMLRDLPEDQLAASGVPQLVEPVLWDYTADLDVHGKVLLMQKYRRCG--FPQLWAASAFKGATGPSQAVPPVEHHLRNHVQWLQVAGSGPTD---SLQGIILTGWQRYDHYSVLCELLPAGVPSLAACLQLLLRGGFDEDVKAKVENLLG-ISSLEKTDPVRE-GAGSFPGSNILALVTQVSLHLRSSVDALLEGNRYVTGWFSPYHRQRKLIHPVMVQHIQPAALSLLAQWSTLVQELEAALQLAFYPDAVEEWLEENVHPSLQRLQALLQDLSEVSA 470

The following BLAST results are available for this feature:

BLAST of TCONS_00006804-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006804-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HEXDC	2.818e-95	33.47	Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=...	[more]

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TCONS_00006804-protein (polypeptide) - C. hemisphaerica