TCONS_00006273-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006273-protein
Unique NameTCONS_00006273-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1182

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006273-protein ID=TCONS_00006273-protein|Name=TCONS_00006273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1182bp
LTYTGGMCDGDRSVAVIKADGFNAAFSLAHQIGHSLGIEDDGVGNVCESG
QHIMASGSGKAAEAYRWSKCSSDYLQGFLRKNQSNCLDHFTSQSSNRENL
ELYGNAGNVYDVDSQCQFVLGDGAKACYQADKDQICSELMCLHPIYSNCT
KTRKPALDGTSCGKDLWCQTGVCVKKGVRDDLVIDGGWSPWKDYVICSRT
CGGGVSYRERVCDQPSPQNGGKYCEGRGREYNICNEKPCIESDESFRQQQ
CKEQNNTFYEDRLSNWTSLENVDESGCQLKCASEADSKITKSFGIVRDGT
ECRIANIPGRCVQGECNPVGCNMELGSLSVTDRCGICNGDGGTCTTDENI
VNNTLANSRMIVNRNLMQRLVTLEDQKSGQFENVAKRLTQLRSLMTDVVT
KKCDGDTNCMQRYGLSKKDRIETRPSEIYKWKMVTSGCSASCGTGVETLF
PECRRVDDGTPVTNMLCEKNAEKPNKMTRSCTHASCPPRWTTSKWSSCSR
TCGTGKKTRNVYCSLNINTEEFLLPSNQCKEHDKPLQLMSCNVQSCPARW
TTTPFGECSSTCGIGHRRRDVTCRRVDNTDGFLKTLPESDCDRASKPLQQ
IVCNAHNPCPGYRKCGGIHNATSGTISSQNFPGNYTKNIECVHEIDTSHG
KTIRLNFTSFNVASSRSEISNECQGDFLRIIDGKCSQQNHRPFTKLCGRQ
TPGYFDSTGNHVCIKFVSDDDAMTDKGFSLRYEILKKKEKKNELINPTTD
ICDKQNDVITAPLGIVTSPNYPSNYPANENCGIDFVSPTNESSGYMLKFD
SLNIGTRSGIMDCHTDYLEVEYNDKKERICGKELVVPSIHIPASKFRLNF
RSSPYPLKQKGFVLTFVTKKFAEENSLDKNSVMKIGNFTQTIQDWHGQLG
NQTNQSNERESEKDDDFIQPASEVRKKSSIDHMNPRGKQAKERHLIKDEK
KTKEHEQEIKREKIELLRVLVELAKVNPSKLKNALKRNRLIRQRGNKLTT
AKRKLTKTKTNEDDKKSINSKKDIIAKISPSNKLNETSRNNLENKRDNIY
TIIMDDLQKEIGKISSEGKKTNVKKSKIEAEPRDSIYEIVMDPGFDDDLS
IAGVEQTAKKVQNQQRSTIPKPPRHKNTLPVKKSDALVIPAIKGVTALDQ
QLNLGITPLKRLKPEMFKTGPHFDNWKRKLKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003583XLOC_003583Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006273TCONS_00006273Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013273Peptidase_M12B_ADAM-TS
IPR000859CUB_dom
IPR000884TSP1_rpt
IPR006586ADAM_Cys-rich
IPR024079MetalloPept_cat_dom
IPR001590Peptidase_M12B
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 945..965
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 898..957
NoneNo IPR availableSUPERFAMILY55486Metalloproteases ("zincins"), catalytic domaincoord: 1..87
IPR013273Peptidase M12B, ADAM-TSPRINTSPR01857ADAMTSFAMILYcoord: 325..344
score: 50.2
coord: 305..324
score: 36.22
coord: 194..212
score: 58.43
IPR000859CUB domainSMARTSM00042CUB_2coord: 615..735
e-value: 2.9E-24
score: 96.6
coord: 755..869
e-value: 1.1E-7
score: 41.5
IPR000859CUB domainGENE3D2.60.120.290coord: 612..734
e-value: 8.0E-27
score: 93.3
IPR000859CUB domainGENE3D2.60.120.290coord: 752..868
e-value: 9.7E-15
score: 54.2
IPR000859CUB domainPFAMPF00431CUBcoord: 615..732
e-value: 7.7E-23
score: 80.8
coord: 752..866
e-value: 1.3E-9
score: 38.3
IPR000859CUB domainPROSITEPS01180CUBcoord: 752..869
score: 16.344
IPR000859CUB domainPROSITEPS01180CUBcoord: 615..735
score: 21.952
IPR000859CUB domainCDDcd00041CUBcoord: 758..868
e-value: 1.31721E-11
score: 62.0446
IPR000859CUB domainCDDcd00041CUBcoord: 615..732
e-value: 2.54995E-27
score: 107.883
IPR000859CUB domainSUPERFAMILY49854Spermadhesin, CUB domaincoord: 757..867
IPR000859CUB domainSUPERFAMILY49854Spermadhesin, CUB domaincoord: 614..734
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 188..240
e-value: 2.3E-10
score: 50.5
coord: 431..487
e-value: 8.6
score: 1.0
coord: 549..610
e-value: 7.0E-5
score: 32.2
coord: 489..547
e-value: 4.1E-6
score: 36.3
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 552..575
e-value: 0.0053
score: 16.9
coord: 188..239
e-value: 1.5E-9
score: 37.9
coord: 492..546
e-value: 5.5E-5
score: 23.2
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 421..487
e-value: 2.4E-4
score: 21.0
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 548..610
e-value: 6.7E-11
score: 41.9
coord: 488..547
e-value: 3.2E-12
score: 46.2
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 184..239
e-value: 6.1E-16
score: 58.0
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 549..610
score: 9.301
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 185..240
score: 11.772
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 486..547
score: 11.48
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 550..609
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 482..546
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 183..239
IPR006586ADAM, cysteine-richSMARTSM00608acrcoord: 98..176
e-value: 1.8E-4
score: -4.0
IPR024079Metallopeptidase, catalytic domainGENE3D3.40.390.10coord: 1..114
e-value: 3.8E-24
score: 85.1
IPR001590Peptidase M12B, ADAM/reprolysinPFAMPF01421Reprolysincoord: 2..88
e-value: 9.9E-12
score: 45.1
IPR001590Peptidase M12B, ADAM/reprolysinPROSITEPS50215ADAM_MEPROcoord: 1..91
score: 14.042

Blast
[Close]
BLAST of TCONS_00006273-protein vs. Swiss-Prot (Human)
Match: ATS6 (A disintegrin and metalloproteinase with thrombospondin motifs 6 OS=Homo sapiens GN=ADAMTS6 PE=2 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 4.710e-92
Identity = 221/693 (31.89%), Postives = 316/693 (45.60%), Query Frame = 0 
Query:    1 LTYTGGMCDGDRSVAVIKADGFNAAFSLAHQIGHSLGIEDDGVGNVCESGQH----IMASGSGKAAEAYRWSKCSSDYLQGFLRKNQSNCLDHFTSQSSNRENLELYGNAGNVYDVDSQCQFVLGDGAKACYQADKDQICSELMCLHPIYSNCTKTRKPALDGTSCG----KDLWCQTGVCVKKGVRDDLVIDGGWSPWKDYVICSRTCGGGVSYRERVCDQPSPQNGGKYCEGRGREYNICNEKPCIESDESFRQQQCKEQNNTFYEDRLSNWTSLENVDESGCQLKCASEADSKITKSFGIVRDGTECRIANIPGRCVQGECNPVGCNMELGSLSVTDRCGICNGDGGTCTTDEN-------------IVNNTLANSRMIVNRNLMQR-LVTLEDQKSGQFENVAKRLTQLRSL---MTDVVTKKCDGDTNCMQRYGLSKKDRI------ETRPSEIYKWKMVT-------------------SGCSASCGTGVETLFPECRRVDDGTPVTNMLCEKNAEKPNKMTRSCTHASCPPRWTTSKWSSCSRTCGTGKKTRNVYCSLNIN-TEEFLLPSNQCKEHDKPLQLMSCNVQSCPARWTTTPFGECSSTCGIGHRRRDVTCRRVDNTDGFLKTLPESDCDRASKPLQQIVCNAHNPCPGYRKCGGIHNATSGTISSQNFPGNYTKNIECV 642
            L    GMC+ +RS ++ +  G  +AF++AH+IGH+ G+  DG+GN C +  H    +MA+        + WS CS DY+  FL   +  CLD   ++   R+ L      G VYD D QC+F  G  ++ C      ++C EL CL    + C     PA +GT C     +  WC  G CV  G      IDGGW PW  +  CSRTCGGGVS   R CD P+P  GGKYC G  + Y  CN  PC      FR++QC + +N  +  +  NW          C L C +E  +  T+    V DGT+C  A+    C+ GEC  VGC+  LGS +  DRC +C GDG TC   E              +V     +  + V    M +  + L+ +    + N A  +   R      T    K+   +   ++  G + ++ I      E      YK+ +                     S CSA+C  GV+     C+R+DD + V N  C+ ++ KP +  R+C    CPP W    W  CS+TC  G +TR V C   I  +EE  L  + C  H +P++   CN QSCP +W    + EC+  CG G + R V C+  D      KT P + C   SKP  +I C+    CP  R   G      G  S+Q   G   + ++C+
Sbjct:  374 LASVAGMCEPERSCSINEDIGLGSAFTIAHEIGHNFGMNHDGIGNSCGTKGHEAAKLMAAHITANTNPFSWSACSRDYITSFLDSGRGTCLD---NEPPKRDFLYPAVAPGQVYDADEQCRFQYGATSRQCKYG---EVCRELWCLSKS-NRCVTNSIPAAEGTLCQTGNIEKGWCYQGDCVPFGTWPQ-SIDGGWGPWSLWGECSRTCGGGVSSSLRHCDSPAPSGGGKYCLGERKRYRSCNTDPCPLGSRDFREKQCADFDNMPFRGKYYNWKPYTGGGVKPCALNCLAEGYNFYTERAPAVIDGTQCN-ADSLDICINGECKHVGCDNILGSDAREDRCRVCGGDGSTCDAIEGFFNDSLPRGGYMEVVQIPRGSVHIEVREVAMSKNYIALKSEGDDYYINGAWTIDWPRKFDVAGTAFHYKRPTDEPESLEALGPTSENLIVMVLLQEQNLGIRYKFNVPITRTGSGDNEVGFTWNHQPWSECSATCAGGVQRQEVVCKRLDDNSIVQNNYCDPDS-KPPENQRACNTEPCPPEWFIGDWLECSKTCDGGMRTRAVLCIRKIGPSEEETLDYSGCLTH-RPVEKEPCNNQSCPPQWVALDWSECTPKCGPGFKHRIVLCKSSD----LSKTFPAAQCPEESKPPVRIRCSLGR-CPPPRWVTG----DWGQCSAQCGLGQQMRTVQCL 1046
The following BLAST results are available for this feature:
BLAST of TCONS_00006273-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATS64.710e-9231.89A disintegrin and metalloproteinase with thrombosp... [more]
back to top