TCONS_00005124-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005124-protein
Unique NameTCONS_00005124-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1424

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005124-protein ID=TCONS_00005124-protein|Name=TCONS_00005124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1424bp
MMTGMSAFRYKRNTPESKTTISKLEGRIEELVSQLQRLNEEKLNQETELE
ELFQSQDDLLNKYDFECKERERSEKQVRALEKKMNELQQADETDHSSGES
QEKTLSTLKDNVRHLETQLNDVNKSRDQLEQEMFIKEEIIQQLRHEIDDI
GRKNLEVNSSNNQEFEKVLQEVAQLDQQLNATRSEIEELTRDRDELQSIN
KDLQTSLIQTQNTNNSLKRELNDLQENSIDKQSIQNELDNLVDEKNKLEE
NLTKRLNELEGLLHDKELVITELTERVKNDDQTTPSEKDNKDNWETRLSQ
RFTDIESLEAELDTISFLRDELASKTNEIELLSNQTERSLMKDSIDCSVM
TDSSFMDKYKETVHENEALKSQLDELEYEKQKLHQAYKEVRIELTRFSST
EENYVNETHEQRTIIEQLNMQIAGLQGKERLADRLDEENRSLKDDIEKLN
TEIATLQEKSEQMNQLGRDNQTMKEEFDKLISEIAILREKENLVDQLEQQ
NKSFQNDLEQRNSEITLLKEKEQLLNDMSQENESLKDGQTRIHELHNEVT
ILKDSLDETRGLLDQSRGLVEEKTQQLESLQREFDQKETSFAVITGECSS
LNISVEESRSELNDLSKSYELIQGEKQSLEQILQEVKEENTRLSEVFATK
EQEFSNLKSVLEEKTQLVDSLKDSLANEADKVDVIEELERVKVANERSET
ELQSALNRLEELEQALKTRNEELKEKSDKAAKLRNVALKAKKELESMRGK
YAEEKANNEEKMKEMVEEVKLLKNELVQQKTQCSKHEEEFEEMHKEIENL
KEKLQQEQRSSTSNASSVSEHIEKIKSLVSENDQKENRIAELEKSFSEKI
DTLTLSNSQKENRISELEHLNADSKTTIETLSRDLENIRKSVDEKTTECS
EMKKKMTNMETALQSAHKETTQMNVMNLEIDDYLKTIENLNQKLQTKDAE
CEELKKANEEMASLKKAKQSVDEKNRKMKNLIMKLKKEIEEMKSQANKNE
EEHNVSRDQIQELSLAIEDLKMQVSETVREKEKIQTELQQKLEIQQKSYQ
TLEVKFNRSHSDMTSSHNALEELKTEYESYKVRAHNVLKQQKENSSNTLV
ERHDAEIARLESVISELRNELSTNKDELNVTKDEHEQLEIEFEKQHALQA
EFMKEFNEKENRFKHKFKQMKSEADAKDADHENKIKLLITENNKLLQFTK
GQMEDVKLENEDHLKEIESLKKQIGHLKSTAAENTSRDIKREDGLAENKG
SHLSLDFAGNKSLMERQEGEGMDQTELEIIDSISHHSSSSVPQTPLSPSA
TSILENILQHDSPQTPLAMKDELTRLKSSLQTSLKKNDHMTALLRESEAN
ASRHYEQAIVLKEEIRRLERNEKREQDLLNMEYLKNIIVKVSNYIDKGGM
GGQWPASLTCLVSYSFLCRVLMLM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002919XLOC_002919Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005124TCONS_00005124Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032023GCC2_Rab_bind
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 165..276
NoneNo IPR availableCOILSCoilCoilcoord: 1351..1381
NoneNo IPR availableCOILSCoilCoilcoord: 923..1055
NoneNo IPR availableCOILSCoilCoilcoord: 1196..1230
NoneNo IPR availableCOILSCoilCoilcoord: 63..93
NoneNo IPR availableCOILSCoilCoilcoord: 105..146
NoneNo IPR availableCOILSCoilCoilcoord: 661..681
NoneNo IPR availableCOILSCoilCoilcoord: 563..590
NoneNo IPR availableCOILSCoilCoilcoord: 1070..1090
NoneNo IPR availableCOILSCoilCoilcoord: 688..814
NoneNo IPR availableCOILSCoilCoilcoord: 21..55
NoneNo IPR availableCOILSCoilCoilcoord: 359..393
NoneNo IPR availableCOILSCoilCoilcoord: 308..335
NoneNo IPR availableCOILSCoilCoilcoord: 605..653
NoneNo IPR availableCOILSCoilCoilcoord: 818..870
NoneNo IPR availableCOILSCoilCoilcoord: 425..538
NoneNo IPR availableCOILSCoilCoilcoord: 1100..1141
NoneNo IPR availableCOILSCoilCoilcoord: 878..919
NoneNo IPR availableGENE3D1.10.287.620coord: 10..146
e-value: 6.2E-4
score: 18.8
coord: 496..645
e-value: 9.8E-9
score: 34.4
NoneNo IPR availableGENE3D1.20.5.50coord: 727..839
e-value: 0.0026
score: 17.0
coord: 1077..1234
e-value: 0.0053
score: 16.0
NoneNo IPR availableGENE3D1.20.120.330coord: 147..281
e-value: 7.9E-6
score: 25.1
NoneNo IPR availableGENE3D1.20.5.320coord: 840..923
e-value: 3.8E-6
score: 26.3
NoneNo IPR availableGENE3D1.20.5.1000coord: 424..495
e-value: 0.0098
score: 15.4
NoneNo IPR availableGENE3D1.20.5.50coord: 924..1033
e-value: 0.0069
score: 15.6
NoneNo IPR availableGENE3D1.20.120.330coord: 282..423
e-value: 0.014
score: 14.5
IPR032023GCC2, Rab binding domainPFAMPF16704Rab_bindcoord: 1320..1376
e-value: 7.6E-11
score: 41.8

Blast
[Close]
BLAST of TCONS_00005124-protein vs. Swiss-Prot (Human)
Match: GCC2 (GRIP and coiled-coil domain-containing protein 2 OS=Homo sapiens GN=GCC2 PE=1 SV=4)

HSP 1 Score: 151.754 bits (382), Expect = 1.020e-36
Identity = 159/524 (30.34%), Postives = 265/524 (50.57%), Query Frame = 0 
Query:  913 LQSAHKETTQMNVMNLEIDDYLKTIENLNQKLQTKDAECEELKK-----------ANEEMASLKKAKQSVDEKNRKMKNLIMKLKKEIEEMKSQANKNEEEHNVSRDQIQ-ELSLA---IEDLKMQVSETVREKEKIQTELQQKLEIQQKSYQTLEVKFNRSHSDMTSSHNALEELKTEYESYKVRAHNVLKQQKENSSNTLVERHDAEIAR--LESVISELR-------NELSTNKDELNVTKDEHEQLEIEFEKQHALQAEFMKEFNEKENRFKHKFKQMKSEADAKDADHENKIKLLITENNKLLQFTKGQMEDVKLENEDHLKEIESLKKQIGHLKSTAA----ENTSRDIKRED----GLAENKGSHLSLDFAGNKSLMERQEGEGMDQTELEIIDSISHHSSSSVPQTPLSPSATSILENILQHDSPQT---PLAMKDELTR--LKSSLQTSLKKNDHMTALLRESEANASRHYEQAIVLKEEIRRLERNEKREQDLLNMEYLKNIIVKVSNYIDKGG 1399
            L+   K+  Q  +MN+EI DY + ++ LNQKL  K+ + E+L++             EE+ SL+ + Q  +EKN K+K L++K KKE+ + K QA   E +H + +  ++ EL  +   +E  K+Q++E   EK KI   L+   E  Q++    + +      +  ++      + +E+ESYKVR HNVLKQQK N S +  E   A+  R  LE +I +L+       N L  N  EL   + EH+ L    E+ + +    ++E   KE   + K   ++SE     ++H   +  L ++N  L    + Q+  ++   E+H K +E+L++Q+  +++       E T+R           L E + + L L    +   + R+EGEGM+ T+ E + S S ++ S              LE +L  +SP+T   P     E T+  L   L ++ K  DH+  LLRE+EA  +   EQ  +LK EIRRLERN++RE+   N+EYLKN++++   ++  G 
Sbjct: 1145 LELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSK-QA---ETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVHNVLKQQK-NKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTL---LERHNKM----LQETVSKEAELREKLCSIQSENMMMKSEHTQTVSQLTSQNEVLRNSFRDQVRHLQ---EEHRKTVETLQQQLSKMEAQLFQLKNEPTTRSPVSSQQSLKNLRERRNTDLPL---LDMHTVTREEGEGMETTDTESVSSASTYTQS--------------LEQLL--NSPETKLEPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKSAANLEYLKNVLLQFI-FLKPGS 1633
The following BLAST results are available for this feature:
BLAST of TCONS_00005124-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GCC21.020e-3630.34GRIP and coiled-coil domain-containing protein 2 O... [more]
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