TCONS_00004647-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004647-protein
Unique NameTCONS_00004647-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004647-protein ID=TCONS_00004647-protein|Name=TCONS_00004647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MASKPKTQRGKRFLANRESKIDENTKQVMFIQGGKTSDIVNQALRDINTL
KKPNSHLFRRKNILRPFEDQTSIEFFSQKSDASLMVFGSHSKKRPHNLVF
GSFFDHHILDMFELGIDRFAPIQDFKTAKVALGTKPCIMFSGEEFENKLE
YRRLKTYFTDFWRGEKTTNVRLEGLEHVIQITSVDDKIYLRSYRIVLKKS
GLKTPRLEVEEIGPSIDFSVRRSHLASESLYKDSLKKPKSNKPKKKKNIE
HDVFKTKTARIHMQKQDLDTMQTRKMKGLKRQKEPKSDANSEGSKRQKQT
AD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002619XLOC_002619Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004647TCONS_00004647Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007109Brix
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007109Brix domainSMARTSM00879Brix_2coord: 29..223
e-value: 2.3E-41
score: 153.4
IPR007109Brix domainPFAMPF04427Brixcoord: 34..222
e-value: 1.2E-39
score: 136.3
IPR007109Brix domainPROSITEPS50833BRIXcoord: 26..229
score: 28.12
NoneNo IPR availableGENE3D3.40.50.10480coord: 25..220
e-value: 8.5E-38
score: 129.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..302

Blast
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BLAST of TCONS_00004647-protein vs. Swiss-Prot (Human)
Match: RPF2 (Ribosome production factor 2 homolog OS=Homo sapiens GN=RPF2 PE=1 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 3.556e-114
Identity = 166/297 (55.89%), Postives = 224/297 (75.42%), Query Frame = 0 
Query:    4 KPKTQRGKRFLANRESKIDENTKQVMFIQGGKTSDIVNQALRDINTLKKPNSHLFRRKNILRPFEDQTSIEFFSQKSDASLMVFGSHSKKRPHNLVFGSFFDHHILDMFELGIDRFAPIQDFKTAKVALGTKPCIMFSGEEFENKLEYRRLKTYFTDFWRGEKTTNVRLEGLEHVIQITSVDDKIYLRSYRIVLKKSGLKTPRLEVEEIGPSIDFSVRRSHLASESLYKDSLKKPKSNKPKKKKNIEHDVFKTKTARIHMQKQDLDTMQTRKMKGL-KRQKEPKSDANSEGSKRQKQ 299
            KPKT+R KRFL  RE K++EN K  M I+GG  +  V + L+D+  LKKP   L+++KNI RPFEDQTS+EFFS+KSD SL +FGSH+KKRP+NLV G  +D+H+LDM ELGI+ F  ++D K +K   GTKP ++F+G++F+   +YRRLK+   DF+RG   +N+RL GLE+V+  T+++ KIY RSY+++LKKSG +TPR+E+EE+GPS+D  +RR+HLAS+ LYK S+K PK+ KPKKKKNI HD F T   RIHMQKQDL  +QTRKMKGL KR  E  ++ + + SKR K+
Sbjct:    9 KPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKKKNITRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSLKDIKNSKCPEGTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVLHFTALNGKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKLSMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQTRKMKGLKKRPAERITEDHEKKSKRIKK 305
The following BLAST results are available for this feature:
BLAST of TCONS_00004647-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPF23.556e-11455.89Ribosome production factor 2 homolog OS=Homo sapie... [more]
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