TCONS_00004524-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004524-protein
Unique NameTCONS_00004524-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004524-protein ID=TCONS_00004524-protein|Name=TCONS_00004524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=789bp
MERFILSIWLVLVCVGYSSSRCISEYSKGRFTASRDSNCSNSGYTSIPWK
EIPYYRRAILFMNNNKITQLRREDFAVEGKKIVLYLHGNPIKTLQANVFY
DLKDLRELSVSAEEIEDGAFNGLTNLQYLWIIGSEKLTSLPRNILKSLPN
LKELSINSTGITTIQSRFLAGFEHLTFVDLSHNKIRTIEKNVMEKTFHVD
QIRLNGNQLNKIPSDLVKRLKRLDLSKNHFTRIGEDQFSMFTELTHLDLS
VNNLQELPSNIFKHNTQLQSLKLQRTNISFIPSINLLNNLHYLDISFNHL
EKLSINTNGKILSGGGYQLRFLKIRNSGLKKLYFSGGQRSFKELDISENC
FVKHPYTRFSIKVLNVSNSCLNETIEPYYNGADWVMDLHGNNYRNVIVNR
SRTHYQGSIILSHNKIERIQIRSDSLKLLDLSYNVLSSTSNILIPTYLNI
DIGKFILKGNQIHDLQSKHMKKIQVTHLDLSDNNISQFPNTMLNPSAIKY
MNFANNKIAHVPKTISTSFSNLIELNLRNNSLVSLPYAIFSDASTLKKFD
LSSNDLKCSCNLTITLNLMQNKDSIVGSCVDDTFNKQNLTSFTGDIAEIS
KDTKCNLCPIDPCSCRGECKASEQKGFLCKCDEGYTGRHCQFSKSSCFLT
QTCGLCNDTICGEHGTCKEVSPTDYKCKCKAGYTGTYCNIPQCILEQNCG
LCSKNSPCNGNGTCQEILKKDGSISNNCTCYEGYSGNRCQHLSLCKACKI
HQPVCESYTHGCKCSGKVCILNCVETQSCGLCTEGYCMS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002545XLOC_002545Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004524TCONS_00004524Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR000742EGF-like_dom
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 123..147
e-value: 350.0
score: 0.6
coord: 473..495
e-value: 91.0
score: 5.4
coord: 241..264
e-value: 0.002
score: 27.4
coord: 172..195
e-value: 17.0
score: 11.3
coord: 217..240
e-value: 9.5
score: 13.5
coord: 519..542
e-value: 0.58
score: 19.2
coord: 148..171
e-value: 19.0
score: 10.9
coord: 287..310
e-value: 16.0
score: 11.5
coord: 83..101
e-value: 260.0
score: 1.7
IPR000742EGF-like domainSMARTSM00181egf_5coord: 655..689
e-value: 0.0016
score: 27.7
coord: 607..641
e-value: 0.13
score: 21.4
coord: 701..740
e-value: 0.043
score: 22.9
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 698..740
score: 11.517
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 654..689
score: 12.915
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 606..641
score: 11.349
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 17..200
e-value: 2.8E-29
score: 101.1
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 445..591
e-value: 2.7E-17
score: 61.9
coord: 201..312
e-value: 1.3E-23
score: 82.5
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 314..444
e-value: 0.0086
score: 14.7
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 408..579
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 23..369
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 219..278
e-value: 1.5E-10
score: 40.5
coord: 149..209
e-value: 8.8E-9
score: 34.9
coord: 499..556
e-value: 4.0E-7
score: 29.6
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 80..101
score: 4.578
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 267..288
score: 6.326
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 545..566
score: 5.471
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 174..195
score: 6.988
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 219..240
score: 6.996
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 521..542
score: 6.742
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 243..264
score: 7.473
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 474..495
score: 6.98
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 289..310
score: 6.719
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 425..446
score: 6.534
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 497..518
score: 4.555
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 136..155
score: 5.048
NoneNo IPR availableGENE3D2.10.25.10coord: 699..743
e-value: 3.0E-5
score: 23.5
NoneNo IPR availableGENE3D2.10.25.10coord: 605..644
e-value: 1.1E-4
score: 21.8
coord: 655..692
e-value: 7.5E-7
score: 28.8
NoneNo IPR availableCDDcd00054EGF_CAcoord: 661..688
e-value: 0.00608892
score: 34.5346
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 700..743
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 629..640
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 629..640
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 728..739
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 677..688
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 728..739
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 677..688

Blast
[Close]
BLAST of TCONS_00004524-protein vs. Swiss-Prot (Human)
Match: SLIT2 (Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.067e-19
Identity = 163/754 (21.62%), Postives = 281/754 (37.27%), Query Frame = 0 
Query:   60 LFMNNNKITQLRREDFAVEGKKIVLYLHGNPIKTLQANVFYDLKDLRELSV---SAEEIEDGAFNGLTNLQYL--------------WII----------GSEKLTSLPRNILKSLPNLKELSINSTGITTIQSRFLAGFEHL----------------------TFVDLSHNKIRTIEKNVMEKTFHVDQIRLNGNQLNKIPSDLV----KRLKRLDLSKNHFTRIGEDQFSMFTELTHLDLSVNNLQELPSNIFKHNTQLQSLKLQRTNISFIPSINLLNNLHYLDISFNHLEKLSINTNGKILSGGGYQLRFLKIRNSGLKKL----YFSG-GQRSFKELDISENCFVKHPYTRFSIKVLNVSNSCLNETIEPYYNGADWVMDLHGNNYRNVIVNRSRTHYQ--GSIILSHNKIERIQIRSDSLKLLDLSYNVLSSTSNILIPTYLNIDIGKFILKGNQIHDLQSKHMKKIQVTHLDLSDNNISQFPN-TMLNPSAIKYMNFANNKIAHVPKTISTSFSNLIELNLRNNSLVSLPYAIFSDASTLKKFDLSSNDLKCSCNLTITLNLMQN--KDSIVGSCVD--DTFNKQNLTSFTGDI-----AEISKDTKCNLCPIDPCSCRGECKASEQKGFLCKCDEGYTGRHCQFSKSSCFLTQTCGLCNDTICGEHGTC--KEVSPTDYKCKCKAGYTGTYCNIPQCILEQNCGLCSKNSPCNGNGTCQEILKKDGSISNNCTCYEGYSGNRCQH 741
            L +  NKIT+L +  F       +L L+ N I  L+ + F DL +L  LS+     + I  G F+ L  +Q +              W+              + TS  R   K +  +K      +     +  F+ G E                        T VD S+ K+  I +++ + T    ++RLN N+   + +  +     +L++++ S N  T I E  F   + +  + L+ N L+ +   +FK    L++L L R+N      I  + N  ++ +S   L  L  N    +  G    L  L   N          Y +  G+   K+  ++ N   + PY    I + +V+               D+  D   ++     ++R  T      +++   NK          LK+L               P  +  D+ +  L GNQ   +  +      +T +DLS+N IS   N +  N + +  +  + N++  +P        +L  L+L  N +  +P   F+D S L    + +N L C CN+    + +++  K+  +  C    +  +K  LT+ +         +++   KCN C  +PC   G C +     + C C  G+ G+ C     +C             C   GTC  KE     + C C  G+ G  C       E N   C  N  C  N TC      DG  +  C C   Y+G  C+ 
Sbjct:  353 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSAK---EQYFIPGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTA---ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML-RSN-----RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQ-------------DFTCDDGNDDNSCSPLSRCPTECTCLDTVVRCSNK---------GLKVL---------------PKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNSDPVDFYRCTCPYGFKGQDCDVPIHACI---------SNPCKHGGTCHLKEGEEDGFWCICADGFEGENC-------EVNVDDCEDND-CENNSTC-----VDGINNYTCLCPPEYTGELCEE 1035
The following BLAST results are available for this feature:
BLAST of TCONS_00004524-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT22.067e-1921.62Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE... [more]
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