TCONS_00004433-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004433-protein
Unique Name	TCONS_00004433-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	258

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004433-protein ID=TCONS_00004433-protein|Name=TCONS_00004433-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MSVNKIDAGKGRLTLQGDYVVHHEKNITFSLEGDRLPAVLKGTHSGDVFI
TNLRLIFVNNGKGYNTFSMDFQSIRNTEVKQPIFGSNHIKGYVKSEINGG
WEGSANFKIDFPKGGAIEFAERFQKTVKESLRHRQAGVAPPPPMQPTYGG
GYYPPQGPPPMMAGGGAPGYYPPPQPGYYQYQSSAPPAPGFQPNMAGPPP
QGGPAPPPYQTNAYQNNAAAGYNSGVNAKAQEAYMSGNTAYIPNDAPPPY
NPNYKKDD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002481	XLOC_002481	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004433	TCONS_00004433	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004182	GRAM
IPR011993	PH_dom-like

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004182	GRAM domain	PFAM	PF02893	GRAM	coord: 38..126 e-value: 3.1E-6 score: 26.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..215
None	No IPR available	CDD	cd13214	PH-GRAM_WBP2	coord: 29..128 e-value: 1.30896E-36 score: 125.75
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 13..123

Blast

[Close]

BLAST of TCONS_00004433-protein vs. Swiss-Prot (Human)
Match: WBP2 (WW domain-binding protein 2 OS=Homo sapiens GN=WBP2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.706e-26
Identity = 50/125 (40.00%), Postives = 77/125 (61.60%), Query Frame = 0

Query:   17 GDYVVHHEKNITFSLEGDRL--------PAVLKGTHSGDVFITNLRLIFVNNGK-GYNTFSMDFQSIRNTEVKQPIFGSNHIKGYVKSEINGGWEGSANFKIDFPKGGAIEFAERFQKTVKESLR 132
            G  +V++ ++I  S +   L        P   KGT  G V++T  R+IF++ GK    +F M F  +++ E+KQP+FG+N+IKG VK+E  GGWEGSA++K+ F  GGAIEF +R  +   ++ R
Sbjct:   11 GGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFLSKGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVKAEAGGGWEGSASYKLTFTAGGAIEFGQRMLQVASQASR 135

The following BLAST results are available for this feature:

BLAST of TCONS_00004433-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004433-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WBP2	9.706e-26	40.00	WW domain-binding protein 2 OS=Homo sapiens GN=WBP...	[more]

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TCONS_00004433-protein (polypeptide) - C. hemisphaerica