TCONS_00003944-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003944-protein
Unique NameTCONS_00003944-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length130

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003944-protein ID=TCONS_00003944-protein|Name=TCONS_00003944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MTLTNTNGIFFNDVSKLCVLEPEVNQQTHELKTECKDFVEKISEFQGIVG
GFISVVDGLAKGVEKEKMKAIGARNSLKSMTKQREAQQQQLRALIAEKQT
QLERFRLQYELLLKQEAEQNDFIEQFMMQK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002205XLOC_002205Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003944TCONS_00003944Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028172FT20
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 77..115
IPR028172Intraflagellar transport protein 20PFAMPF14931IFT20coord: 8..126
e-value: 5.4E-45
score: 152.3

Blast
[Close]
BLAST of TCONS_00003944-protein vs. Swiss-Prot (Human)
Match: IFT20 (Intraflagellar transport protein 20 homolog OS=Homo sapiens GN=IFT20 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.173e-47
Identity = 85/123 (69.11%), Postives = 103/123 (83.74%), Query Frame = 0 
Query:    8 GIFFNDVSKLCVLEPEVNQQTHELKTECKDFVEKISEFQGIVGGFISVVDGLAKGVEKEKMKAIGARNSLKSMTKQREAQQQQLRALIAEKQTQLERFRLQYELLLKQEAEQNDFIEQFMMQK 130
            G+ F++++KL VL+PEV QQT ELK ECKDFV+KI +FQ IVGG I +VD LAK  E EKMKAIGARN LKS+ KQREAQQQQL+ALIAEK+ QLER+R++YE L K EAEQN+FI+QF+ QK
Sbjct:   10 GLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELVDQLAKEAENEKMKAIGARNLLKSIAKQREAQQQQLQALIAEKKMQLERYRVEYEALCKVEAEQNEFIDQFIFQK 132
The following BLAST results are available for this feature:
BLAST of TCONS_00003944-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFT201.173e-4769.11Intraflagellar transport protein 20 homolog OS=Hom... [more]
back to top