XLOC_038076 (gene) - C. hemisphaerica

Overview
NameXLOC_038076
Unique NameXLOC_038076
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_344:234109..242244+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038076 ID=XLOC_038076|Name=XLOC_038076|organism=Clytia hemisphaerica|type=gene|length=8136bp|location=Sequence derived from alignment at scaffold_344:234109..242244+ (Clytia hemisphaerica)
CCACCTTTAAAAGTTGATCAAGCTGCATTACTCAAAGAAATGAAGTATAA
TATTAACTTTAAGAAGAAAGTCAACACAAATTTCAAGTTAGAAACTCTAC
AAGGTGTTGGTAGATCCATCCATGTGAAGATCATCTATCAATGTTTCAAT
GCGACTGCAGGTATGTTCTAAGATTAGAGAAATCAACACATGGCTTACAC
TTTGCTGAAATAAAACCAAATATTTATCCAATGATTAAATGTCAAATGAT
TACGTTCAAAATATTCATTAATATCTTCGGACGGGGTTTCCAACAAGTGG
GAAAGGACAGGATGCTAGGGGACAGGTTTTTTTACCGTCAGTAGTTTTAC
CGTCCTCGACTTTGTGgttcagaactgcgggttattttcaaatcgcttca
gtcactccacTGTCCTCAAAATGCAAAACATAAACTCGCTTATTGAAATC
CAAGGGTGGTTACGCGCTTTTTATTTATACGCGTGGCGTCTACTGGTGGG
ATGAGTGCTTTAAGAGGCCCgtggttttcgtgatggcgtgattggtcTTT
TTTCAAGTTCGTGATTACGTGATCTAagatttaaagttttaaagtgcGTG
ATTACGTGATCGGAGGAACCAACGTGATCAACGTGAAAGAAAATCTAAGT
CGCGATAACgtaatttggattttttttgcttgattgcgtgatttgaaagg
tgactgggGGGATTTTCTAAGCaagtaaataaaatttcttaGCTAGCCAC
TTTTAAAATACAGTGGATTTTCATTAACTTGaacttctataactcgaatg
tctccttaattcgagCAGGTTTTAGGTCTcctcagttaacaatgccttat
aaacctctCTTCATGACTATCGAAATTTGCTTAGTTGGAACAAATTGGTt
tttccccgtgcgtgttcaagTTGTGGAAACTACACTGATATTTCCCGCAC
TGAAACAATCCCTCGTAATGAACACGGTAGGGTTCTCAAAACGACGAAAA
TCTccagaaatttaattttctataaattttCTAAATCCTTAACCATTAAA
GAGGGTAATTCCTTTCCCTTATCGGTATTCAGCCCTTTTATTACATCATt
ttagcgaccgtagtgcagtggtagagcagtCATAAAACTGTACGAGATGA
CTTTTACATTGCTTCCCTTACAGGTAGTCAAGGACAATGTGACGAAGAAA
AATTCGAAACTTTCTTACAAGGGGTCCACCAAGAAGGATGTCAATGTATG
ACTGTTCCCTCAAACGAAGATGATTGGAACAAAGAGATTTGCTCAGGTTT
GGAAATATTCTGCTTACTTCCACAGTAGTGGATGTAAGGGGGATGCAAAA
TTCACGACGaaaagtgtttctttttttACGTGCAAAGTTTAAGTGTAGGG
AAATATTGAACTTTCTAAGTTTTCTCTCCGGTGGCactaaagaaaaattg
attcaatttttaaactaaactAGACATTTAGAGTCTACTACAATCTCCTT
TTCCTATTTAGGTGCTGAATATTTTGGCTGTTCAAATGCATCTTTACACC
AAGAAGCTATACGGGTCAACTTGACCACTTTTTTATCTCCCAAAGTTTGC
ATTCGTGTCTGTCAAACAATGGGTTACGCTGAAGCCGTAATTGGCGGAGA
TAATGGATGTTATTGTCAAAACTCAGGCTTGGAATTCGGGAGATCATACG
TCTCTGAAGAAAAATGTCTTAGTGCTTGTAGATACGAACCGGACTTCAGT
TGTGGGAAAAGTTCCTACAAGCATTTATATACAACCGGTATATAAATCAT
TCCTTTTAACTCATCATTAGCACATAACGTTGGTTGAACGTTGTCTTAAG
GTTCATCTTCAAACATCAGATGGACGTTGAAAAACGTTATGTACCTGTAG
GATTTCCAGAAGCTATCTTTTATACCAAAACACACATATATATGCCACTA
GTTTCATAGTTTCATATTAACATGAAAATAGGCATAATACCTAATATGTA
ATATTTGGGATAAAGGTTGAACCAATTAATAGCGTGCTCTTTTCGAGACA
CACATAtgtcaaaaaatttgttttactACACCCCTGTCCCACAGCCCCAG
TGGAGggtagggataaaaattcctattgaaatcccaattggGAATGGTtc
tggagtacaatttttaaacattgaatttctagtggggatgaaatcatagt
caatttcccagtggggctgaaattccaaggTATTCATCTCGCCGGAAACg
gaatttttaccaaattttccagtggggctgaggttccagcgggtctgtga
cacaggggtgttttattaGTAAACAGCTGACATTCTGTTTGAATTATAGT
AGtagtaaaaatagtaaaaaagtaaaaaatctgaTTGTCAGGTATGATGG
GACCATTGGAATCATCAGATGGACTTTGTTCAAAGAGCGCATGCGTCAAT
GGAACATATTGCGTTCGAATGTTCGATACAGAATTTTGTGTTTGCAATCA
AACATCAAGTGCAAAGCCTGAAGAGTGTTATGGTAAGAAATTATTTTCGC
ACGTAATGGTATGAGACAACATGAGATGTCGACAGTTTTCGAAAAGCTTC
TATCAAGAAGGGTTAATTTAGTTCATCACCTAGACtatatgctatagtct
aagacaaatcactatctaagaaataagctcaaagccgaagaaaatttgcC
AACGggtttttgccgaaaagagtttaaaatcggaagagtttgccagtctt
cgaaactctcccacCGATTTTTTCTCCGTATACTGCCATAACgacatacc
gccatattttccgcctttactatcactgtaacggacgataacatcgtcta
ttCATCAACGTGATCTCAGACATGAAAGCAAGTCCCCTCTTCTTTAAGGT
TGAAAATAGGGAAGTAAGTTGGGATTCACAAAATATGAAATGTTTTCCAA
TGGAAATTTAGTTAGTCTTagaccaatttttccagtggaaagggaGTTTC
ATCGGAGCTGTGATACAGGAATGTTCGAGAAATTATTAATCCATAAAAAT
GGAACTTATGAGGGAAAATATAGTAAACTTTTTTCCTTGCGACCTTCAGG
TTGCTTAAATGGATGGACAGCTATCATTGGCCAACCAAATTGTTACTTCA
TCACCGATTTGCAACCTCTCCTCAAGTACCAATTACAGCAATACTGTCAA
TCGATTTACGGGCGGGTCGCAGTACCTCATGATTTTCAAGCTGTTACTCA
ATTCATGCGTCTCATATTGAGAAATTTTGTGGAGAATCGTTCACATCATC
AAATTGAAGCAGATATTAAAGAGATAATTAAAAATGGAGACGACTTTTTA
GCGAGAGGTTTTCCACTTTGTGAAAGACCCAAAAGTAAGTGTTTGCAAGT
AAAGTATCAGCAAGGGACCTTGCGTCTTTATATTCTACACCTTTTAGCTT
ACAAAGGGTCCTTAAATTCAACACAAAAAGGGAAAATTATCAAAaggccc
cagggggggggggtcactcATATGGTCTgacccacggcatgtgccgccct
taagagTAGGTTTTTCGAGATCCTCAAAATGCacgggtgtacttttgata
ttttatttattttccaatttatttATTGTTGGTCTGCCATAGTAATAATA
AAATACTAATTAATACCAACCGTAGAGAATAAACTAATTATATAATGAAG
AATATAAGATNgtgtacttttgatagagcgCACTACAAGGGTCTTATTTC
AGCTGGATATACTGTAATAGTgtgttttgggaatttttaCTGAATTCTAC
TGAAAATAAGTCTGACAGTtaaaatctgatgtatctttatagttttgact
caTATCCAGTCTTATTTGTTTTTCACATTGTGTCGACATTACTggctcat
tttcaggtggcttcagcaaaataagatatgaaatcaaagcACACTGTAAG
AGTCAGAAACATTGCAATTGCAAATGCAatctaagggtaccttttcactg
ctcaagagttgcactgtaagggtccgattttgaaagccatttttttggcT
GCACATGCCGTCGttaagaaatcgagtgcccccctccCCGGGCAAAAGGC
TCAGTCAGTCAATTATTTGGTCGTATAGTTTCTTAAGATTCCCTTTGATT
TCTACGATTTGTTCGTTATAGGTTCAACGTTACTAGTTCAATCTGGGCCT
CAATTTTTACGTGATTCAAATAATTTCTCACGGTGTCAAGGTTGTATGTA
AAATTATGACTTATTGTGTTCGACTTTCGCCTACGTCATtagagaaaaaa
ggaaaaagttttAATGAAAACTAGACTTTTCGTCGGAGATTAGTAACAAA
AATATACGAATAAACCACAAAACGAACGCGTTATCCTCGTGGGACTACTC
CATGTGGATAAGAATTTCTTGTTAACTAACAGTTTAACTAAAAGACATAA
AAGGAAATTTTGGGAATTAGTctcaaaaatcttcttttcctAGAAAAAGA
GAAACGAAAGCACGGGGTGGGGTGGTTTATTCCTGATCTTACCTATCAAT
TCCTAGTAACCTCCTtttaacccgggggggggggggcttaggAAAAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGTAATTCACTAA
TAGCGAGCTTTTTTATCTATTCTTTTGGGTGGTAAAGACGTGCCAAAAAC
GGTTTGGAAAACCCAAAGTTGACCCGCAAAAGTTGATTTACAGTCAGCCA
TGATCTAACCAATTGAAAGCCTAGCTGTTTCATCCACCGTAGAAAAAACA
TCATAGATAAACTGGATGTTTCAATTTCTCCATAGCTGAAGTTACTGGAA
GATACCCGTGGACTAAATGGCCTAAAGGCACTTATGGTTTGCCAATGTCC
CGCACAGGCTGCCCTGTACAAAACCATTTCGAATGGAGAGCAGGTTCATA
TGTACAGGATACAGAGAACGATAACAGTGCAAACGAAGTATCACGTGACC
TTCATCTCCATGGCAATATAAATAAAGGTAGTGAGATCTTTCGATTTGTT
GATCTAAATATTCTTTAGGTTAATAAGTAAAAACATGACAGATTACCTGG
CGTGTATCCAAAGCTTTATCTTAATTTTACTGATGAACGTAATAGTGAAC
GACGACCAAACGAAAAAAACGCACAAACTAGGTTTGATGAAGGATATACA
TTTTTGACGGAGATGTATCATTAATATGATATTTATACAGGGTTTGACAA
AGATCCTTCTCTAGATACCAGGGGGGTGTTTTTAAACATTTCAAGGCATT
CGATCGGGTGTGGCACGATGGCTTActctttaaactcaaatcttaTGGGT
TGACTGGACCGTTGCTTTCCTTAATTCGCAGCTTTCTTGACGATAGGTAC
CAGAGAGTTGTGTTGAATGGGAAAACATCTGAGTGGAAGCGAATCAATGC
tggggtacctcaaggctcgattcttggtccattgttcttcttaatttata
ttaatgatcttccaaaaaaccttgagtcaaaacccaagatctttgctgac
gatacctcTTTATTCTCTCTTGTGGTTGATCAACTTTTGAGCCTTGAGGT
ACTTAACAGTAATCTCTCCAGGATAACTGAttgggctcatcaatggaaga
tgtccTTTAACCCCGACCCATCTAAGCAAGCTGttgaagtctattttacc
tgtaGATTCGTGTAGACTCACACCTCCTAATGCTCCATTGATCTCCTTTA
ATAATTCAAATATCGTGACCAGTGAGTACCAAAAACATCTTGGTTTAATC
TTAGATTctaaactttcttttgatcacCATCTAGATGAGAAGATACaaaa
ggccaataaaggaaTTGGTCTTATTAACCGACTTCGCAAGCATGTGCCTA
GGAGATCTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtctatggaattatta
acaatttagccccttcgtatttacgtaactacctgccagtaagacttaca
gcaccaggtggccttagaacaagaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNcgtactgcatatctcagtggaatgttctgggaggtaatatacgag
atctaccttcaattaaaactttcaaaaaagcaatctatgaatttttgaga
cccaagcaatcttttgatgttcctgacattcaaggagtgatctttcttaa
tcgacttcgggtcggtttcagccatctcaacgagcataaatttagacacg
gCTTCCGggacactttagaccctttctgtggttgccgaactaactctgtt
gaaaacactcaacactttcttctgcactgctctatatattcccatgcaag
acaatctttgttcgacaaacttcagaccctaggcattatttttcatccgt
cacttaaccctccttttttctgtcggcttttattatatggggatgaaagt
ttgagttcaaatctaaataaatctattctttctTCTgctgttgaatttct
taactaaactggaaggtttagcggtgctttattttaggcttttacctaac
aattgtagcttccttctcctccaagattttttcttttttttctctttatt
tacttatttatttattttttacatagtctagtacctctggcgatataacg
ttagttcctagcggggggagggactatatttgatgtttaagtaatgtttt
gtaatatatgttcgtagtgtacacgtgtctttgttttaataaagaaaaaa
aaaatgtatcattATCGTGGAAAAATCtagtaaaaaaagtaaattcttta
ttttaatgTTCAGTTTCACGACATAATTATTCGATACGTCTAAAGCCTGG
GGAACTGCAGCGTagactaaaaataattatatacaCTGCTTCATATCTTT
ACATTTATCCATTCCATAGGCAACATCACAAGTCATTATTGCATCAAGAC
GGATCCAGTAGGAAATACGTCCTGGCCTGATGGGCGGTATTGTATCTACC
GTAAAGGCGGTAAATGTCCGGATAATATGGTGCCCAGTGCAATCTTTTGG
GATGATGAAGATACAAACAATAGAAATAAAGGTACTTAAGAGTTGAGAAA
GTATCATTTGTAAacaatttttagtcggccctaattttagtcaccaagcc
aaaatttagtcactaagttttggccgataaggtaagcagaaaaaaagaag
tgaattttgactgggtgaattttttcttttacataAAATAGGTGTAATGA
GGAAATATCAGTGctgttatttttgaaaataacggAAAACTTAAATTCGG
GGGAAAGCTTGGTGAGaacctttttggaaatttttaccGGGCTCGCTAAA
TTCTCCAAGATAAATTTTCATCAAAGAATTTAGCGGATGGTATAAAACAA
AAAGTCCCCGGAAGGCAAAATCTTTAGCTTAAAAAATATCCGTGTAGAAT
TAGCTCGTCTAGAACAACagtaatatatatatattccCACTTACAACCTG
TGCGTATTCTAACAATTTCATCCAACATCCAATCTAAACTTCCATTTCTT
CTCAGCGGACGGCGTGCATCCAGATGGTATGTTCAAAGCAGACACAATCA
TTCAGTTTTGTTGTATGGATAGACCGTTGAATAAGA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00060535TCONS_00060535Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00060535-proteinTCONS_00060535-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:234109..242244 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.94	1.45	0.32	0.61	0.36	0.18	0.43	0.91	0.57	1.66	0.29	0.32	1.03	1.34	0.65	0.41	0.37	0.7	1.73	1.32	0	0	0.03	0