XLOC_034507 (gene) - C. hemisphaerica

Overview
NameXLOC_034507
Unique NameXLOC_034507
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_245:671788..679206+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034507 ID=XLOC_034507|Name=XLOC_034507|organism=Clytia hemisphaerica|type=gene|length=7419bp|location=Sequence derived from alignment at scaffold_245:671788..679206+ (Clytia hemisphaerica)
TTCTTTCTTTAGTTATCTCGGGTTATCAATACAAAAACACACAAAAGCTa
ataaaaactaagaaaaatgTTATTGGGGGTCTTATTGATCCATTTCCTTT
GTTCCATAACTAAAGTCGATACACAAGGGACATGTGGTTCAACACTAACA
CGATCAGAAGGCACACTAAGCTCATTAGCACCCTACAGAAGAGGTCGAGA
TTGTTATTGGGACATCAAAGGAGATTTCTTCACAACTTACATCAAGTTAA
CCTGGTCAAAATTCGTAGTGGATGGTGTTATGCCGTCCTGTGGCAACGAT
TACGTTGAAGTTTATAAGGCTGATTCAAAGTAAGTTTAAAGCATCTTTAA
CAAACATCATGAGTAATTTAAATTATTTAgatatttattatttaaaaact
gTAAATTATCTGGACCACTTtatttggacctaccccggtggaggtcctat
aaattaacctgtgtttgttcgttcgtccgtccgtccgttcgttcgttcgt
ccgtccgttcgtctgttaccaacttttctcaggattgaatcataggaatc
ttttgatttttggtacaaaggtgcaaaatggtagtggccaaaatgtgacg
gagcccgattttcgaaaaaaaaaattttggggcaaatttgggccaaaaaa
cggctaaaaaacgggttttttggacttgatgaaaaattggatcattaatt
ttttctgattttttgcatgaaagtagggtaccatcataggtaaaagatgg
ctcaaacagattttcgcaaaaaaaatttgttggtgcaaaaaacgcatgtt
tatctataagaatcactattaataagcatacatcaatgttcttagtcaaa
ttactcaattttgttatgaattagatgttttttttgctcatgagggctta
cttttgaagaatttgtgtgtttagacatgaaattttggttgctgggcgtg
tttttatagaaaaactggccaaattcgNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TGGACtttatgaaaaattggatcattaattttttctgactttttgcttga
aagtagggtaccatcataggtaaaagatggctgaagcagaattttgcaaa
aaaattttgtttgctcaaaaaacgcatgtttatctataagaatcactatt
atttttcatacatcaatgttcttagttaaattactcaatttttttaataa
gatagatgttttttattgctcatgagggcttacttttaaagaatatgtgt
gtttagacatgaacttttggttgcttggcgtgtttttatagaaaaactgg
ccaaattcaatatttttttataagcacattacttaggtattagcttttct
cgagattggctttttcattttttatgattttttgcacaaagatgcataac
tataaaccctcgaatgtgacggagctcgtttcttgaaaaaacaattttga
ggtaaatttcagctaaaaaacggctaaaaaaagggttttttgatggatca
ttatttttttttggactttttgcatgaaagtaggtaaaagatggctcaag
cagatttttgtaaaaaaaattttcagctcaaaaaacgcatccttatctat
aagaatcactgttaataagcatacatcaatgttcttaaaattactgaatt
ttttgatgagatatgtttttttctcacgaagtcttgaatatgaaagaata
ttccaagagcatgaaattttggtttctaaacgtttttttataataaacaa
acgactaattttaatagatcgccactatttgtgttctgaatgattgttta
atggtcacgctcacgtagatatcaattatatatgtgttaaatgcataacc
aggtaggtccataaaagtatcacttgttattaacaaaaaactatttgtat
tatcttttttcagcTGCCGAAAGCTTGAAAAACTTGTACGATTTTGCTCG
AACAATTTAGTTGGACATTTACCACATGATGTTTATGCTTACAATGCAAG
GTGTTTGAAAATTCACCTTCATTCATCAAGCAAAGATTCATCCAAAGATA
CAGGATTTGTAGCCGGCTACAGTTTGATAAGTGGTAACATCCCTGTCACA
TCTACTACTGTCTGTAAAAGGTATGTTTTTTTCTCTCATCAAGATCTTTA
TTATGAACAAATCAATCAGTCAATCACCAAAGAGGAAAGTGGTGCTTTCA
GAGGTCGAAAAGGGGGTTATCGTTTATTGGAAAATCTATTTGTTAAACAC
CTAACCAAATATGTTTTAACAAAAGTCTGTCATTCCTAGTTTTCGGAAAT
GAATAATCTTATTAAACTCATATCATTCATTTTTCGACGCTTAAACATTC
AACTTGATAAAGACAACCGTCGAAACGTCACATgcttagtatatgtaatc
acatgataacgatatgtaatcacatgataacgagtgcaattcgagaataa
ttgcacgagtgatttttttgttattaattttccgagtccgaaaggaattg
tacgagttattatgtgattacgagctaatcgcacaatggctttcactact
ttttcccagttaggaaagtaaattatagaaattacacttaaggttttata
tttttctcttctctctgtgtctttcttttaatgttgtttattgattttgt
ttttcacaaaataaatttcgaatccaattaaaacgttcgatgtaaaaaaa
aatgtaagaaaaaactttaaaatcaattttgtaaacattggcgcggcatt
gaagagtgtgattaacgattaattgctctctacaggatgcaattaacgat
taattgctctctacaggatgcaattaacgattaattgcgcTCTACAGGAT
GTAAAATGATTTTGAGAGCTGGtgttgagggcgtgccaaataagaaaaaa
taacccatcgtgcgattaatgTTAAACTTCTATTTTTGACACAAATctac
tttcaaaaaaaagaaatcaaattgaCTTTTACGTTTGTTTATTAAACTCA
TAGAGAGACTAAGGTACAGAACGATTTCGGTGTCATCACTTCACCGCAAT
GGCCCAAAGCATACGAAAAGTCCAACCTACCAAAATATAGATATGATTGT
GAATGGGATATCAAGTCAGAGAAAGATGAACTTATTCAAGTCAACGTGAT
GGACACTGAGTTTGACGGATCTGCAAGTGGATATTGCTCTTACAAGAATC
GATTGTATCTTAATGGTAAGACGACATTATTGATCTTTGAAGACTAAGTG
GTATGGTGGTCATCATTTTCGGCCCATTCCTAGGCGACCCGAATTCAATT
CCCACCGTGGTACCTTCGACTCACTTGGCAAGTGAGTGTAACTTTGCCCG
GGTTAACCAATACTATGTAAGGGAAATAGGGTACCACTGCTTTGATACAA
TAGCGTGGGTAGATATGTCAGACATTGTGATGTGATTACATTCATGTGTA
AGGTTGCTAATTATCAAGCACGGGATCAAGCATCATGATACGTGAGGGTC
GCTTACACAGGATCAGTACCGCCTGTAGTAGCGCTATGAGACATTCCTAC
TTGAAAGAGAGGAACTCCTGCTTCCAAAGGAGTAGGAACCATTCTGGTAA
CCTGGAGATGTAATATCTATCTCTTCATTGTCTTTGTTCGTTTATTTTTA
CACAGCTTCCTTGACttaacattttttataaaattccttTCCCAAATTAC
TTTTCTTATCGTTAAAGACCTGTTACTGATGTCAAATATGTatcatttct
tttataagaaatacaGCTCTCCAAATAATAAAGTGGGTCCCATCTGctgt
aattttaaaaattatgattaTGTTGGTACagtaaaaagattttcaggTTT
AACTCATATCTGAAAAACGTTCAATTCATACTAGGTGAGAAGTCGGTGAT
TAAATCTAACGCATATCGTAAAACGATTTGTTCCAGTCCTGTACCCTTCA
CGTGGTCTTCCGAATATTATAAAGTAGAAATCGAATTGAAAGGATGGTAC
CAGCCCTCTCAACCGAGACGTGGTTTTGCGATTGGGTTCGTCAAATACAG
AGATGGTAagagaaaaatttgttttttttttctctcacgAACGTGTCCTT
TTGGCCCTCTctttaagcatcctctatagtGTCCTCTTTTTTCAAAGATG
TGAAGATAATTTGCAGCTTTTCTATCGAAACGTTAAagattttataaaat
ttaactTGTAGTAAAGAGGGTTTTGCGAAATTCGGTAGAAAGAGGTAAAA
TGGTAATGGTTCAACATACAAAATAATATTGTAAACTTCTactttaatac
aataatgaccggttagtgagggctgtactgagaaatattgcccgaggtca
agtaacgaccgagcttgcgaggttgttacGTCGACcaagggcaatatttt
cagtacagcccgaaaaaaacggtcattattgtatttgttaaccgtttcct
tcagcttcgattgatttttagcgctttatccaggaaaaatagcgaaataa
agtgGAAAACACAAGCGAAAagatatcaaaaattgttataatataacaat
agcgttcagtttgaggtcgttgttgttattttctgcccgcgcagtttgat
tattagcccgagagtgtcatttgggaccgacgcgaagcggagggcgcaaa
tggtactagagggctaataatcaaactgcaagggcagaattaatgacaat
aACGAACGAAAGCTTAACGCCATTACTATTATTGTCCATATCGgaaattc
aaacaacgtttttttctagcgtcagccaagtcttttcgcttcaatgcaat
gacttcaacaagttttgagtaccctTGCAAGCGGGCCGCANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcagcgcgggtatgact
atttgagtcatagaacctttcaataccgcccgccgttcgaatctttaatg
gcttacttaatgaccgctatatggataataatttctgacgtcagaaatta
aaaaaaaaagtgacatCACAATGagttttcctaacgacgggcaactctgg
gcagtgtaggcccgtcgtcatgcaaaaagaaccaattgcattgcgcaaaa
agccgtgtagcccgctttaaaaaagtaaccggttaacaatgagAAATAAA
GGAATAACTTACAATTTCTGCGTGGTGTTTCCTATTGGTGCAATCTTCAG
GCAATGCAGTGTATTGTAGATTGAAGATGACGCAAGCTTTAAACACGGTG
CAGCAATTGTAtgttagttctttatttctcaatGTTTCGCTCGAATTTTT
TTGAGAGAATTGAAAGAATTGTTTGACCTCTCTTGTGATTCTATCCATTC
CACTAAATTCaacttctttgattttttacaGAGACAGCAGCAACGCGAGC
TCAACTCAGCATGATTCTCGGTATCACGTTTGTCGCCGTTATGGTCATCA
TTGCCATCGGTTGTTTCATCAAGCGTTGCAAAGCACGGCGTGTTACGTAT
AATTCCGTCACCTACAACCGTGATGATAACCAAGCCGTCATTGATCCGGG
CACGACTTCATCAACGACGGCTGTTATTGCTGACCCTAATCTACCGCTCA
CCGTGAATTTGGAAAAGAACAATATTCCTTTCAATCCGCCTAGTTATCAA
TCTGTCAGTAATTATCCACAAGGTATTAATTCTTAATTGCTTCtttgaac
ttgatttttttatttttcacatttgaaCTTCAATACATTATTATTCTCTT
GTTTTAGATGCGCCTCCACCATACCCAGGACCACCCACAAGAATAGATGC
AGAAGACACCACAAACCTACCACCTGTTCAACAGCTACCTTACCCGCCCA
ATCAACAACCACCCGCTCCTTATCCGCCCAATCCGCAAATGGTTTATCCG
CCGCCCTATCCACCACCAACACAATAAGACGTgttttattgttgttggtt
ttattTGAGTTGGAGTGGTTGTAATATTATATCTTTGCTCACTAATAAAG
AAGTGCATCATTTTTGTATCATTCTTTTTTTGATATAATGCATGAAAAGG
AAATGGGTTCGAGTTTACCTCGGAGGAATATTTTATTGGAATGATGTTTA
CCAGTAAACTTTGTTTGGTTTATGATGTCTTAAGAAAAATAATACGATAC
AACTCCTGGAAAGAGTTTTAATCTTCAAGATTTTAACGTATTTCGTACTC
AGAACATTTTACAGATGTTGAAAACAGTTGAGTATAACAGAATTGCTGAA
TTATCTAATACACGATGTGATTGGTGTTTCACTTAGGGCacttttttaaa
taatcttttttaaataaaatttattataacattgtagatttttattttga
aatatatgtattttcatttttgagtaCTGCTGTAAAAAATTGGATGTTTC
ATACTATTTATACTTTGTCACTGTAAGAATTGAACCTGCCATTAGGTTAT
TATGCTTTTTCTATTTATactagaaattttcattttatatctaaaattta
tttgaaatacATATACAGTTTACtcttgctaattcgaacttAAACTCTAA
TTCACTTGAATTACAGTGAGCCGAATTGCAGTGAGATTCCAATGTAGAaa
ttattcaataaaattttcacaCTGGAAGGGATTTACTTTTAGAGGGATTC
GAATAAAGTTAAAGCTCACTGTATTGTGAAACTGAAATTGCAATAACCTC
ACGTGGTGAGCAGAACAATATTCGAACGCCGTTTGACTTCCTTTTCTCGA
CTTGAAACTTGAAGTTTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00054784TCONS_00054784Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00054784-proteinTCONS_00054784-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:671788..679206 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.33	27.55	19.6	17.55	16.87	12.68	21.46	22.57	18.83	25.29	27.5	17.23	12.68	11.09	7.58	9.37	10.23	11.34	10.89	15.39	13.55	13.81	24.84	26.07	11.62	14.02	19.02	14.19	22.87	24.1