XLOC_029237 (gene) - C. hemisphaerica

Overview
NameXLOC_029237
Unique NameXLOC_029237
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_100:848192..853865-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029237 ID=XLOC_029237|Name=XLOC_029237|organism=Clytia hemisphaerica|type=gene|length=5674bp|location=Sequence derived from alignment at scaffold_100:848192..853865- (Clytia hemisphaerica)
TTTTCGTCGTATTGGTAGTTGCAAGTAATAGTCTTTCTTTGTGACCTTTC TTAATTTCACCCATTATCATAAATTTATTTCCAGACTACCCAAAACAATA TAAAAACTACAAATATATGAAGTATAAAGATGGATGACATCATTGCTAAT GTGGACAATATGCGCTTTGATATAGAAGTTGCATTGGAAATGCAGCTGGG GATTCAACCTCTTCCTTTCCCTGGAATGGACAGTAAGTTTTCCGTACCAA TGTTGAAATGATCTTTACTACTACATTCTTGTGAAGCTCTTCTAAAATCT AAAATATCAAAACATTGTATTCAATGAAAAGTTATTATTCATATGAACTT TTGTAACATAAAAACGTTACAGAAAGTCAAATCATCCAAAATTTAGAGAG TAAACAAGTATATGTGTGCGCATTGACCTCAGGTAGCGAACTACTAAACT GAGGACTGAAATGAGATTCAAACTCACGACTTTCGCATTACTAGTGCAAC TGCTCTACTGACTTAGCTACCCATTCCACACTAGAAGCATGTTTGGGAAC ATCGTCCGATTCTGGACTCGATCACTCCAGTAACCACTTGTAGCGTGAGA TACCAATGAGATAAACTACAAAAGACTTTATTCGACATTAAAAGCTCACT ACTTTGAGGTGCTTACTAAACAGGGGATGAAAGAATCGGAGATTGCACTT CTCTATAATATTCAGAAACAAAGTGAAAGATGAAAATCAGGCAATGTTAT GAAGCAAAGCAAGAAACTTTCTTTCGACAGCTGATTTTACAAAAAAGTGA AGCTGTCGATCAGTAATTTACACTATTTACTCAATTTTCTTCAGGTTTCT TAAGTCTTGAAATGCTGATTTAAATGTATTTCATGCTTTTTTTTATTTTT TTAGAATCTGCGTCCGCAATTTGTGATTTTTTCATCTCAAACAGATGTAC GAGAGGGCAGCTCTGTCCACTGAGGCATGTCAGGGGAAACCAGGCTATTG TATGTAAACATTGGCTTCGTGGGCTGTGTAAGAAAGGAGACGACTGTGAA TTTCTTCATAAATATGATATGGAAAAAATGCCTGAGTGCTATTTCTATAT CAAATACGGTAAGACTAAACCTAATAAGATTACATTAAGGGTAGAAAGGT CATCCTTGAGTTTTACATTTAGATCAATGTCTGCTAATAGCATTCAAACT TTTTTATTGCAATCTCTATGAAATCATATCTTCAAACATTTTAAAATTAA TCGTCTCCTCATTTATTTGCATGGAAGGGTGTTTTCAAAGTAAAATCGAA ACTCGTTTTTCGTACCACTCTACCAGACTAAATGTAAAGAAAATTTTTCA ATTTTGTCATGTAGGGTCTACACTAGAGATTTGCTTTTGTCCTTGGCACT AATGTTAAAATCTTTATTCACAGTAAAACACTTCCCTTCTAATTATGCAC AACTCCAATTCAATCCCACTTTAATTTACAGGGCAGTGCAGCAACAAAGA ATGCCCATTTCTCCATTTGAATCCAGAAGATAAAATCAAAGACTGTCCCT GGTACGATCGAGGCTTTTGTAAACATGGTATGTCTGTGTTGTTGTTTCCG AAGAGGAAATATTTGTTTCATTCTCTTTTATTTATAAAAAGAAGTCAAAA GTCAAGATAGACTTTTGCTGTTTTTCTTGCTTTTTGTATCTGGTGGAAAC AGGTGGAAAGCCTGTTTATAAATTACGTCACAAACAGCGTTTGATTTGTC TTTTAAGATGATTTCTAAGGTCGAGACTTCAAATCACACCTATCACACTG AAAATATCACTTGCACTTCTTAGAAATCCTTTTGGGAAGGATTAGTCTTG ATAGCCTTATTCTGAAAACGAGGCAATAGTTGTTCATTGCGTAATTTATG AAAAGGCTTACTTACTTTTATGGGATAAATTCTCACGGGAATTTAATTTC GTGGATGGCATTACTGGGAGACAATATTTTCACGATTTTATGCCTTATAC TGCCAAATCTTGCATGTTGGTTGTTTGCATACGCATTATTAGCGCTTCTT TGATGCCAGTAAACATTTAAAAAGTAATTTGTTTGACATTTTTTGAGTTT TTCGTTTGAAAATATTTTGCTGATAAGGTCTTTCTAAATTTATATTTGGA CTTGAAATTTCTCGGATGACACCGAAATCTGCTAAATTTCATACCATCAA AGTATTGCGACATGAAAGGAAACCAAGCAGAACTAAATCCCAAAAAAGAC ATCCATTTTCCTTGAAACGTAAAGAAAAACAAACGTTTGGCTTTTTTAAA AAGCTATATTTTGTACTAAACTAAGTATATACAACTTTCACCTTGATGTC TTTTTCGGAGTTACTTTCTTTTTATTTTACCTGATTTGTCAGCTGATAAT AGCTTCTCATTCATGTATGTGCATACATGATATTTATGACTTGACGCTTT AAATGGGAACACCCATAAAAGACCGGGTGCTTGCCACTGATTGTGAATTT AAATAATAAAATCGTCGAAATCGCCCTTCTATTTTGGATACTTCCGTTTA AAACATTACGTCATGAATATCATGAATTGTGACGTCAACGAGCAATTCAC TTTTTTTCAGGTCCGAATTGTAAGAACCGACATGTCCGAAGAGTTATGTG TGTCAACTACCTCTGTGGATTTTGTCCGGAGGGCAAAGAATGCAAATTTT CTCAGTAAGCAAAACATTTTCATAATCAATTAACTAATTTTTCATAATTC TTATATGCTTAATTGTTGGGGGGATTATTTTCCCTTTTTTCGATTTTTTA AACCCCAAAATCACTTTATAATGATCCCACCATTTTATGACTTTTTACCA AAAACTGTCAAAAACCTGCATTTTCCTAATGAAATTGACTAAAATTTCAT TTCACTTCTTTCAAAGTTCCACCTCCCCGCTTATTCTACCAGATTCTACC CCTACAATTAAGCACAGAAGAGTTACATTATAGTGAAATTTGATAATCTA ATTGTAGTGGCTCAAAAACTAAGAAGACTATCCTAGAAGGCTTGGGTATG TTGTGCTCATAATTGTTTTAAAAAGGCTGGTCTCCACTTGCGTGCGCTTT GATCGCACCTTTTGCTTCAATCTTTTTTTGCTTGGAAAAAAGATTACATT TTACGTTATAAAAATGTAGCGCGCGTTCGAAAAAAAAGTTGAAAACATTT CAATTTTTTCAACCGTTACGTCAGATCGTGCCAATGAAATTCTTTCATTT TTCTTTTGACTAATAGCGTGAAAGCTTTGCTTGAAAAAGTGGGATCACAG CGCGCGCAAGTTGAGACTGGCCTTTAAGTTCTGCTTGAAGAATCCAAGTT TCCCAAAATCATTTTCAAATCAATTTTGGAAATTAACCACATCTTTGCTT CATCTTTTAGTCCACGCTTCGAGGTACAGATCGTAGAAGAACGTAAACCT TTCGCTCACATCGTTTGTCATGCATGCGGTGAGCAAGGTCACAAGTCGAC GCATTGTGCAGTTGCTAGGCGACTCAATGCTGAAGCTGCTATGAGGGTAA GAGAACGACTTCTTTGACAAATGATATTCCTGGATATTCCCAAGATGAAT AGTTATTCGTTCGCTTAAAGTGAGCACTTTTCTTGGCTACCACGTAGAAA CCACTTTCAAGGGAATAAGTCTAATTACGCTAACATGGTTTCTACATAAT AGCAAAAGTATAGCCATCTTAGCAGAAAAATAGAGATTTGTAAAATGAAA CCGTCTCTCAAAATCACAAGAACCTTAGTGTTCCCTTTTAATAATTTTGG GATTGTAAGAGCTCTGGATGAAAAAGATCTCTTGCGTCAGAGTCGTACCT ATTGAGTTTGAAGTCTCGGGGCTAGAGAGGAATTTTCAACCATTCTCACG CAAGAAAAAGTGAAGACTTAAGTTTACCCCGCATTTAGAAATTTTGTTTA AAAAGCACACGGATCACGTGTTTTGGATGGGGAATAGGTGGCTTCCTTTC CCATCCAGAAGTTTCTGCTGTTGAAATCAATGGCCATACATCGGTACATT TCAAGCCTTGTGAGAGTAAAAAGGTGAGTTTTCGTAACTGGTCTCCGTAT TTCTTTCATTTGAAGGGTGAGACTGTTCCCGACGCCCAAAGCACCACTCA ACAAACAGAAGAAACAACCAACCCCACTGAGAACAAAGCGCCTCCTCAAC GCGCCCATCGACCGCCAGCTGGTATGCCGCGGGAACGAATAGAACCGCCC GCTCCAACGATTGTTCAGGGTGATCCGAACGCTGTTGGTGGAGGCGGAGG GGCGGCTTTCGTACCTTTTGGAAAACGACCTCTCGAATTTGTCACGTGTT ACAAGGTGAAATATATTTTCAAGAAAATTGACCTCTTTTTTTAATTGCTA TTATGTTAAGTTATATGATAAGTGTTTACTTGATAATGTTTGCGACACAT AGTGTGTAAGAGGATCATGGGTCGAGGTCATACAAAGAAAATGGGTTTTC ATCAACAAATGAAGGGGCGAGAGTTACTTACTAGGATAAGAAAGTATCAA CATCAAAACAAAAGGACATAGCTTACATTAGTATTTCTAGTAATTATTCA CGAATCTTAATTTGTTTCTGTTTTTGTTTTAGTGCCGTGGAAAAGGTCAT TACGCAAATCGGGTATGTAACCATAACATTTCTTTCTAATAAATATTGCA CATTTCCTCTCAGTCGGATAAACCAGGCTCGCCTTCATATAACTTGGAAT GTTCAATAAAGTGGAATTCTCAGAGATCAGCCTTAGCACTACAGTGGAGT CTCCATAACTTGAAAACGCACGGGGAACACAAATTTGTTCAAAATTAAGG AGATTTCGAGTTACGTAGTAGAGTTTAATAGGTATTGTTAACTGAAGGAA CTATTAAACTTGTTCAAATTAAGGAGACATTCGAGTTATAGAGGTTCGAG TTAAAGTACTATTTTCATATTCTATTTTTAGTGTCCATTTTCGACCAATC AACACCGTCCACCAGCCGGCATTCCAATGTCAATGCAACGATATCCAATG CAACATCATCATCATCAACCGCATTTCATTCAACCTAATACACAACCAGT GGTCCAACAACAACAACAACAACAGGTACCTCAGGTATCTCAGGTACCTC AACCTCAACAGCAACCTGTATCTTGATGATTCGTCGTTGTTATTTGTCGG CTTTTTCTTGTCGGTGACGTTATCGGTTTTGGGGGGCTTTTTTCGACAAA CGACAGAAGCTTTTGTTACTAAATACTTTAGGGTGCTTTGAAAAATTCTC AGGATCATGTTGATTTTTTGGCAATATAGTGTGTCAAATGTATAATTTTC ATACTTGCCAATCCTAATGATGCATTGGGGTGACAAAATAATAATTTTTT TCAATCCCCCTGATAAATCACAACGTCATAGATATCTCAAACAAAAACTT TATCCAGTTTCAAGGTTGTTTTTGTAAAATTTTTCATTTTTGTTTTGTAT ATATTTATTATGACCCAATATATTGTTTATATACCTCTCAGCCATAAAAA ATGTCATATATTTTTCTTTAGCCATCTTCCGCCCCCAGATTTTTTTTTGA GAATCGGACTCCGTCACATTCGAGGGTATAGCATTTTGATTCATTGTACA AAGTATCAGCAAAATTGAATGAGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00045757TCONS_00045757Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00045757-proteinTCONS_00045757-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:848192..853865 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
CPSF4PREDICTED: cleavage and polyadenylation specificity factor subunit 4 isoform X1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
62.48 60.61 21.73 17.24 28.25 21.15 15.98 17.46 16.64 15.41 15.27 12.48 9.96 9.86 10.79 11.81 18.66 13.43 4.93 5.99 15.18 14.44 44.89 38.35 13.22 14.35 6.87 4.69 20 22.73