TCONS_00045757-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045757-protein
Unique NameTCONS_00045757-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045757-protein ID=TCONS_00045757-protein|Name=TCONS_00045757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MDDIIANVDNMRFDIEVALEMQLGIQPLPFPGMDKSASAICDFFISNRCT
RGQLCPLRHVRGNQAIVCKHWLRGLCKKGDDCEFLHKYDMEKMPECYFYI
KYGQCSNKECPFLHLNPEDKIKDCPWYDRGFCKHGPNCKNRHVRRVMCVN
YLCGFCPEGKECKFSHPRFEVQIVEERKPFAHIVCHACGEQGHKSTHCAV
ARRLNAEAAMRGETVPDAQSTTQQTEETTNPTENKAPPQRAHRPPAGMPR
ERIEPPAPTIVQGDPNAVGGGGGAAFVPFGKRPLEFVTCYKCRGKGHYAN
RCPFSTNQHRPPAGIPMSMQRYPMQHHHHQPHFIQPNTQPVVQQQQQQQV
PQVSQVPQPQQQPVS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029237XLOC_029237Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045757TCONS_00045757Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 62..88
e-value: 4.2E-5
score: 32.9
coord: 118..144
e-value: 1.4E-4
score: 31.2
coord: 90..116
e-value: 0.35
score: 19.9
coord: 145..168
e-value: 1.3
score: 15.4
coord: 35..61
e-value: 0.65
score: 17.8
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 147..169
score: 11.582
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 90..117
score: 11.375
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 35..61
score: 9.469
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 62..89
score: 14.061
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 118..145
score: 13.657
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 64..87
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 288..304
e-value: 0.031
score: 20.5
coord: 184..200
e-value: 0.26
score: 14.8
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 278..363
e-value: 6.4E-6
score: 25.6
coord: 174..274
e-value: 0.0012
score: 18.3
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 288..303
e-value: 6.9E-4
score: 19.5
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 185..198
score: 8.779
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 289..303
score: 9.323
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 281..308
NoneNo IPR availablePFAMPF15663zf-CCCH_3coord: 40..119
e-value: 2.0E-8
score: 34.4
NoneNo IPR availableGENE3D4.10.1000.10coord: 31..63
e-value: 0.034
score: 13.6
coord: 64..118
e-value: 5.9E-16
score: 57.7
coord: 119..173
e-value: 9.5E-12
score: 44.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 339..365
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..257

Blast
[Close]
BLAST of TCONS_00045757-protein vs. Swiss-Prot (Human)
Match: CPSF4 (Cleavage and polyadenylation specificity factor subunit 4 OS=Homo sapiens GN=CPSF4 PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 1.826e-104
Identity = 151/304 (49.67%), Postives = 193/304 (63.49%), Query Frame = 0 
Query:    1 MDDIIANVDNMRFDIEVALEMQLGIQPLPFPGMDKSASAICDFFISNRCTRGQLCPLRHVRGNQAIVCKHWLRGLCKKGDDCEFLHKYDMEKMPECYFYIKYGQCSNKECPFLHLNPEDKIKDCPWYDRGFCKHGPNCKNRHVRRVMCVNYLCGFCPEGKECKFSHPRFEVQIVEERKPFAHIVCHACGEQGHKSTHCAVARRLNAEAAMRGETVPDAQSTT--QQTEETTNPTENKAPPQRAHRPPAGMPRERIEPPAPTIVQGDPNAVGGGGGAAFVPFGKRPLEFVTCYKCRGKGHYANRC 302
            M +IIA+VD+++FD+E+A+E QLG QPLPFPGMDKS +A+C+FF+   C +G +CP RH+ G + +VCKHWLRGLCKKGD CEFLH+YDM KMPECYFY K+G+CSNKECPFLH++PE KIKDCPWYDRGFCKHGP C++RH RRV+CVNYL GFCPEG  CKF HPRFE+ +                     +T      +     A +    P  +S++  Q T + ++P + +                   P    ++Q   ++ G          G RPLE VTCYKC  KGHYANRC
Sbjct:    1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPM--------------------GTTEQPPLPQQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRT------------------PQVIGVMQSQNSSAGNR--------GPRPLEQVTCYKCGEKGHYANRC 258
The following BLAST results are available for this feature:
BLAST of TCONS_00045757-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPSF41.826e-10449.67Cleavage and polyadenylation specificity factor su... [more]
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