XLOC_024397 (gene) - C. hemisphaerica

Overview
NameXLOC_024397
Unique NameXLOC_024397
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002351:7634..17288-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_024397 ID=XLOC_024397|Name=XLOC_024397|organism=Clytia hemisphaerica|type=gene|length=9655bp|location=Sequence derived from alignment at sc0002351:7634..17288- (Clytia hemisphaerica)
ACCAAAATTTCAACAAAATTGTGAGTTTTCGATCACTTTCTTAACCTTAG
CTGGTGGGAAAAAGGGCATAATTTGGAGTTGAGTGAGTATTCGATCACAG
ATAAAATCGATACATAGGTGGTCACTGACCACCTTCGATTACAACCAAAC
GTTTGATTAGTACCGTCTGGTCCAAACAGAACAGAAGGACTTTTGTTAGG
AGACTTTTAGAGGTGTGTGATCAATCTTCTAGTTAATGATTTAACAATAG
CCATTTAGCTACATCTAGCCACTATAAAAACAACAATTACACAACAATGT
CAATAACAGTATCCTTTGGTCACGGTTCAAACAGGTTCAAAATCATATGT
TTTCTCGTGCAAAAAAAGAAGCACTTCAATGTTAGCATAGCAAAAAAACG
GGAACCATGATGAAACCGCCATAGCACCGGGCAATCTAATCTCAATCGAA
TGCAATTTAATCTCAATGGTAAGCAATCGAATATCAATCGAATCTGGAAA
TTGCGGTAATATTCAATTGAGATTTGATTGCATTCGACAATCGAATTTCA
ATCCAATTGCATGCGCTTTGGTTCAACTGGTTCGAACGCGGTTCCGTTTG
ATTGAGATTGTCTGGATATGGGTTGGTCTGGCGCGATCAGTAATAGGCAA
GATACCTCACTGTTTTTTTTATAATCTGATACACCATCGGCAGATTTGGC
TGTGAATGAGTTTGTATCCTGGGGGCACTTAGGCCAAATCCATTATTCAA
ACTCTGCAAATCTCAGTTATGGGTCAAAATTCAGAAAATTTTAAGCAATT
CATAGAATTTTGTATATAATTTCTTTGCTCTGACAGGGTCAAGTTTTTGT
GAGAAACTTTTAGTCTTTTGTCCATTTTTTGTCAATAATCAGTATAGTAT
ATTATCTTACAGGTTCAATTTTTAAATCTCCACCTCCCCCTCAGTTGTTC
AGGTCAGTGGCTCCCTTTGGTCAGTATTTGGCCGGTATGATATAAAAATA
TGTTTTTGAAAATATAAGGTTTGACGAAGTTACGAAAATAAATTCCTGAA
TTCTATCTGAATCTAAAATCACCCTTTATCATTTCATGACACAAAGTTGG
AAACATATTCTAAAGAGCTAGAAATTTAATAATTTAATACACTCATACTT
ACAAGGTATTTCTATTCTTTAGAATAACAAATATGTGTAAGATTTACAAC
AGGGGATCTTCAATGTTATGTTATTAACTGTAAATTTCAAGTCATCAGGC
CTGTAGAACTACAAAATCAATTTTGTTTTGCTTAAAGTTAGGTTCAGTTT
CTTTAGTTATATTTTAATTATCACGAATTTTGGCAAACTTGTATGAAAGA
GAGATCCACAGTAAGTAAAAAGACTAGAAATCTTTAAATCCAATGTTTAA
AATGGTTGTTCCAAGTATCAGTAGGTATAATTTTGACTGAATAAAGAAAG
GTCAACGTACATATTCTAAAAGCATTTGAAATTTTTCTCTTAGATCTATG
CAATGAAAAGTTAGAAATGTCGCACCAGTCAAACAGTAAAAATGAATATT
AATGAATCCCAAGGTATGATGATTGATTATTACAATAAGTCAATAATTAA
TATGCATTTAAAAAGGCTTCAATCTGTTCTTTTATTAAACTAATATATTA
TATATAGTTTTTTGTATTACTTTTCTTTCCAAAGTCTAATACACTTTACA
TACTTTTGACACACTGACAAACAAGATTTTACAGACATGACATATTTGAT
GGAGTGTCCCAGAAACAATTACCCCCTCTGACCCTCTTTGACTCTTGAGA
GAAAATATAATTTTGATAAATTATTGTTGTGAGTTACAAATATGTTAATT
TGATCATGTTTGTTGATAATACTTACATTTCGTTGACAAATGACAAATGG
TGAAAAATGCGAGAGAAATCACATGTCTCTCTCTCTCTCTCTCAGGCAGA
AGGGATGATTGTTTATGGGACACTCTAGAATTATTTTTTGGTTAACATTA
TCTTTATTTCTTTTTATTGACAGAACAGCTGACTGAAATGATCAACATAT
AACCACCAGGGAGTTGCTCAATAGAATAGATTGATTATTACTTTGTTTTT
TTCATGATCATTTTCATTTTTACTAGAATGATTAAAAACTCTTATTGTAT
ACTTTTCTTGTTATTCGCATTTTATAATAATTACTTTTAAATACTTCACA
AGGACAGGACTGACATTGACTGACAGTTTAAGTTTGATAACAAAGAGAAC
AACCTGTTTGAATGTCTGTTTATTTGTTATTTAGAACCTTCTACGAGTGT
TGTTGCTGGTGTTAGTGATGTATCACAGCAAGAAAATGTTCCAGACCCAN
GCATGTCTCTCTCTCTCTCAGGCAGAAGGGATGATTGTTTATGGGACACT
CTAGAATTATTTTTTGGTTAACATTATCTTTATTTCTTTTTATTGACAGA
ACAGCTGACTGAAATGATCAACATATAACCACCAGGGAGTTGCTCAATAG
AATAAATAGATTGATTATTACTTTGTTTTTTTCATGATCATTTTCATTTT
TACTAGAATGATTAAAAACTCTTATTGTATACTTTTCTTGTTATTCGCAT
TTTATAATAATTACTTTTAAATACTTCACAAGGACAGGACTGACATTGAC
TGACAGTTTAAGTTTGATAACAAAGAGAACAACCTGTTTGAATGTCTGTT
TATTTGTTATTTAGAACCTTCTACGAGTGTTGTTGCTGGTGTTAGTGATG
TATCACAGCAAGAAAATGTTCCAGACCCAGGTAAATATATGTAAAATTGG
TGACTTTCAATCAATCTATACAAACAGAAATTCCTTTGAATTAACATTAT
TTTTCAATTGTTAACCTTCTTTTTTTATATATTAGGTACACAGGCTACTC
AGGCATTGTTGGCTCACACTGCCCTCATCATAGCAAAATGTTCTGAAGCG
GCAACAATTGAAACAACAATACAAGCTATATTGAAAAAGTCCATANTCAT
CATAGCAAAATGTTCTGAAGCGGCAACAATTGAAACAACAATGCAAGCTA
TATTGAAAAAGTCAATGGAAACAAAGGAAAGGAAAGATGAACTACATTTA
ATGGCAGCAGAAAAAGTGTTACTGTCTCTCTCCTCATATTCACGTTGCAC
TGAATGTATCTTGTATGCCATGCCATTTGTGTTAGATGTCAATGGGGAAA
ATAATTTGTATCTGAGGTAAATTTCAAATATTTATAAAAACTTTTTTAAC
TGATTCTGTTTGGAGGTGAGTATCTAGGAGCAAATTTCAGAATAGGTTCC
ATTGAATAGAAACTTTTTCATCAACATATACTGTGTAGTTTTTGTTTTTC
TTTACTTAATCAGGTGCTTCGAAACTGGGACTTTGAAAGGATTTTTCGCA
AAACATTGTAAAGACCTATTCTCAGAAATCATTTCAACGCACAATATCAC
AAAAGTGCATATCATGAGGATATACAATGATTGGGATGTTCTTGCTTTCA
ATCATCATAGATCTGAATCGAGCAAAGGTAAGGCAGAAGACTTAGTTTAG
CACAAACATACTAAAACCTGGTTAGTTCATATATTTAAAAAGATTGATTC
AACAGTCAGGGAGGCTAGGATTGACTTGAACGAAATATTTATTTCGGAAC
CCCTGTATATTTTACTTTAGGACATGGACCAGACAAAAATGCCAAAATGT
TTGAGAAGTTGGTGAATTCAAACAAAGGATCAATTCGGCATTCTTTTGAT
CGTGCGTACCAATCTCTGAAAAATACGTTTCAAGGCTTTTCTCCAGGCTA
TGTTGTCTTTTGTGAGCGAATGGCTCGACACACCAAAAAACGAAAAAGGA
AGATTGATGAGTCTGGTGAGCTTGACAATATCAATGAAAATCATCAGTAA
GCCCATTAAATTGAATATTTCATCGATTCAAAATTTGACGGTAAATTGAT
TAATACTGTGTCATAATATCGCTCGTTTTTCGATCTTTTTAAAGCTAAAA
AGAAAATCTAAAAAGAAAGCTTTGTTCTATTTCCAGTTTGTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCAGCTGTTTTATTGTATAAAAACAGGTATAAAAGTCTACGATTTAA
CTTTTGTCTTTTACTTCAGATATTTCAAACTGGATGGTCTTGGTAATATA
AATCAATGGTCCGCAGCAATCACTGATTATAGGCTGAACCGTCCATTTAA
ACCTTACTGTGAGCTCCAAGATTTGGTACAGAAATTTGGGGATTTGGATG
AGTTAAGCTTAAAAGATCAATTTGAAATCCTGTCTTCTTGTCCCAACCTA
CACAAATGGGTAGTACGACCAGATTCTGGAGGTGTCAAACTGTACCAGTA
CTTCGTTCCAAATGGTCGATCTCCAAGAAATTTGATACTGGGAGAAATGG
AAAACGAAAACGTCGAAGACGGCTTAATCAATATCAAAAGCATTGTTACA
ATGGTATTGGCTGAGAAGTACAAACTTCTTCAACCATTGTCTTTCAAAAA
AACAAACAAAAAAGTATGTTTTCTTTCGCGACAAGTTTCTTTTTAAAAAA
TAATCCTCACCTCGAATTGTATTAAATATATTAAAATAAATTTTTATAAA
GGACTCAAAGTTCGCAATATGACGGCGACATCACCATTCATCCCCGCGGT
CGAGGCAATAGATTCAACTTTAGCCTGCCAGCTATCACGGTCTCTCATGG
CAGAATTACTAACACGTACTTCCGTGGTTTACTCCCATGGTGGTAATGTT
TTGGAAAAAGGCTCGTAAATGTCCGTTATTTATAGAAAAGGGGTATACTA
TACAAGTATATAATGTAATATTAATACTACGTTTACAATTTACAGGCATC
CTATCAACGAAAAAGGGTCAACAGGGAGACTATTCTGGACCAATTAGGAG
CAACAGAGGAATCTTTCGAGCTGCCCATGACGATCAAATGTTCCCTTTAT
CAAGAGTTCAAAAGGAATCTTTATAACGACGGTATCATTTTGTGGCGTGA
ACATAATGCCAAATGCCAAGTGGTAGTTATGAATAACTATGATTCTGATA
CTGGTTCTTTTGAGGTAAAAGTTTTACCCACTGGTCTGGTTCGTGTCATT
CCTAAATTTTTGTTTATTATTCTAAAGAGAAAAATCAGGTAAGAATATCT
TCTTAAACATTGATTTATACAATTCCATTTTCAGTTTAATGATTTTGTTG
CCGTTACGCGTACTGTCCGTCCTGGTGGAATCATCAATTTCGAATGTACT
TGCGGAACCCATGCAGCCTTAGCTTCGGCAGTGAATTTCAGCGACTGGGA
TGGTATTAAGTGTTGTCATGCTCGCGTCTTTGCTGATATCATTGAGGAGG
TAATGAACTATATGATGAAATTTCAATTTTGATTGGATTATTTTAGTTTG
TTTTCTCGCGCAATCTGATCATGATCACTTCTAGTGGAAGGTAATAATAT
CGTATTGAATAACATAATATTTGACTAAATAGTCAGTGTCATTTCTTCAT
AGTTTTCGATTGATTATGTCCAACAAAACGAACATGGGTATGGTGCCCCT
CAACTGATGCCTAATTCTAACACCGAAAGTGTTGCATCAGTAAAGACCAG
CAATGGATTAAAATCTGTGATCCAAGACGTAATTCCTTTGCACAGTGTTA
TGGACAGAAATTCTCCGTTAGATCGCCAGTCGGACATCAGTTTATCCACG
TATACACAGATAATCGTTCCAAACGTGTATACGTAAAGTGTATGTCTGGT
TTGTGCTCGTTGGCGAACAGCAAGAAGATCAAGCTCAGGACCATGGAAGA
AGTTGACAAGTTGTGCCCACATCTGTTAGTGTTTAAGAGTTACATCGATG
AGAATTGGGATAAACACCGCCTTCTTCGTCTTCTCCGGACGCAACTAGAT
ACTGATACTGATACTGATGACGAACAACAGTTAGATGACGTAACTGATCC
TGATTTTGATGCTGCTCTTGCTGTTCTTCACCTTGACGACACTCCTGGCG
ATGTAACAGATAATTCAGAAAATAAAGTAAGATTAAGTCTCATATTCATT
ATTCAAAATTTTTCGTTTTCTACTGTATGTTTTAAATCTATATTCAGTTT
TTTACTCTATCATAAATGCAAAAAAAGTTTTTATTTAAGTTAACTGTTTG
AATTTAAAATCTTTTTAAAGGTAATCGACGGATTCGATCCAGAAACACTT
ACTTGGAAATTTCACTCGAAGTTTGGTCGAATCGTAAATGCTGACCCTTT
TGACGAAAACTTGATTACCAGTACAATCAAACGTACAGAATTTTTCTTAA
TGGCTTTAAACAATCAACCTGTAGAATTCCATCCGAGATGCGACTCAGAT
CAATGTGCTTGCGAGGTAATCATACTTCAAGAAGAAAAGTAATCATAATA
ATATGATTCTGCTTCAAAACTAGACTGTTTTTATAACTGAGAGTAAATGC
TGACCCTTTTGACCACTTTATTTTAACTAACTCGTTAATCACACGACAAG
ACACGCTGACCGAGATGATATAGAGTTATATCCCATGCTTATAAAGTGTA
CTTATGCTCGATTCTACCATCCCCCTTTCACTCTAGCAAATGGGTTTTCC
TATTTCACTAAAGATTCATTTATATTTTGACAGGTTCCTTGGATGAGAAA
TTCGGAAGGACAGCTTGTGTACGTGCCAGACGGAAAAACAACATTGTACA
CCAGAGATCGTACTATCGACTGCGATTTATTCAAATTGGTCTGTTCAACT
GGGAAATGCTGCCTACGATGGGATGGATTGTTCGAGAATATTTTCCGAAT
CTCCCAACAAATCTGTATTGTCGAGGAACTGTGCTGGGAGTACATAGACA
TGGTGTGCACCTCCAAGACTACGTTTGCTAGTTTTCGCCAATGCATAGAC
AACAATTACAAGCGCCACCGGTCGCCGAAATATTTCATGTCAGCGAAAAC
ATTCTTAAAATTATTTTTTTCATGGTCAAGTCATCAACCACGAGACTTGA
ACAGGCAGTGCAATTGGTGTGGAGAGTCTCCGCAAGTTCTTGCATGTGAT
GCCACGAAAATCGGTATCTTGTCTCAAAACATCGACATCAACCCAATCGA
GGCATGTGAGTCCAGACAAGTCCTTCCAACAGAAACGAGGCGAAACAATA
GGTGTTTTCTAGCCTTTTCCCCGAAATCAAAAGACGAATCGGACGAGCAG
TACAAAAATAGATTAAGAACAATACGGGACTCGAGAAACTATTTAAAAAC
CTGGACATCGAATTCAACCGAGGACAAATTAACCCCCCTCGAGCACCTTG
ATTGCCGTAAGCAGCTGTTGAGTGTTTTACCGCAAAAAGTAAAACCATTC
TTTTCGAGGTACATCAACCAACAGATGAGTATTGTTCAACTCAAGGCTGC
GAAACGAGTAATGCATTTGTTGAGTTTCGATGCACCTGTGAGAGCCTTTT
TACCGAAGCAACTGGTTCCCATTATGGAAACTATGGTAATGGAGAAGCAT
GCTCGAACTGGTTTGTTGCGGGAGTGTCAAAAGTTCAACATTGCTCTAAG
CAATCTTCTCGCTGCCTTCAATGATAGATTCCTCGACTCTGACGTTTTGT
CCCTTATCGAATACCTTTTGGAAAGAGTTCGTTCGGTTCCAGAACCCGAT
ATTCCACCCTGTGAAGTCATACCGAACGATCCCTCAAAATCAGGACGCTT
TTATTACTTCAGAAAGGATGGAGCACAGATTAGAAAAAACCGTAATTTCG
AAATTGGAAAAGGCGACGACGAGCCGACAACGTCAAGCTGCAGCAAAAGA
TATCCCATCGTTGCTCCACGAGGCACGTCCTTTCTTTTTCTGTGGTTTTG
CCCAGCACATGGTTTTTGTTACGGAGGGCATATTGTGAACGGCAGTGAAG
GCAGAAAGGATGCGGCCTGCTCCCTATTTCAGTTTTTGGAGACAGCTCCT
GAAGGTTTATTCTATGATTTTGCTTGTGGTTTTGAGGAGTACTCACTGAA
TCGTGAATCGGGCTACTTCTCAAACACAAGATTTTTTCACGATCTATTCC
ACAGATATGGTCATAATTGTTCGCCTATGTACAGCACCAAATCTTTGATT
GGCATGACGTACAACACAAGTATATGCGAACAATTTAATAGTTTCCTGCA
ATGCGTGAAAGCCTCGTGCAAGCACATGTCGCAGGAACACTTCGTATTTT
ACGTTAAATTTTTCATAGACATTTGGAACACCAAAAAAGAAACAAGTTTT
AAGAACAAATTACGTGTTGCCCTGGCTGGTTCAAAGTAGTTTATTTTGAT
AGTTTGTAATTGTTTAAACGAATGCTTGAGCTATTCCCTCTATTCTCTCC
TTCGCTTAAATCTTTGTTTTCTTCTGTGTTGAGGCTTTACAAAAAGGTGC
TTATTCCGATATTCAGAAATTCAGTTTTGTAAAGTACTTTCATGTAAAAC
TTTGGCTGAATCGTGAAGGGAGGGAATGCAGGCTATTTATCAACCGTTGT
ATTTAATATTTACTTATATACTTACTTATCCGAAGTTCTATTTTGAAATC
GTTATTTTAACGCTTAGAGCGTTTTCTGTACAAGGGATATTGCCAACAGT
TTTATCCCTATTTCAACTTAAATTTCTTCTTTGTGGAGTATTGTTTATTT
TCGCGTCTTGCGTTTTTTTGTCATTTCGTTGCATCCGAGATGTTTGGTTT
CGTTCTTATAGTTTATCCTATGCGTCATTTTCTTCTCTGTACATTTATTA
TTTCGTCATAGACATCAATATATCAAATTAGTTTATTTCGCAGCTCCTAA
ATTTTCATGATGATATTTTTATCTTATCTATAATTGTCAAAATTAATATT
TTGTCTATGTTGTGTCGGGAACATGAAGATCCTTGTAAAGATTACCATTT
TCAGGCTAACCGAGTCATTAGGTAAACTGTCGAAGTAATGACAGTTACTC
TATATTTTACTCTTTTAGCCTGAACATGTAAATAAAGAAAAAGAATTAGT
TGTCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00040212TCONS_00040212Clytia hemisphaericatranscript
TCONS_00040211TCONS_00040211Clytia hemisphaericatranscript
TCONS_00040210TCONS_00040210Clytia hemisphaericatranscript
TCONS_00040209TCONS_00040209Clytia hemisphaericatranscript
TCONS_00040208TCONS_00040208Clytia hemisphaericatranscript
TCONS_00040207TCONS_00040207Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00040212-proteinTCONS_00040212-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002351supercontigsc0002351:7634..17288 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.85	6.9	2.36	1.3	22.24	21.54	23.02	33.03	25.59	20.44	26.22	31.66	25.57	26.41	8.4	9.85	9.48	11.59	2.82	2.62	6.34	6.43	4.67	6.35	9.77	28.76	1.82	0.82	2.09	1.54