XLOC_023628 (gene) - C. hemisphaerica

Overview
NameXLOC_023628
Unique NameXLOC_023628
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002046:242..4561+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_023628 ID=XLOC_023628|Name=XLOC_023628|organism=Clytia hemisphaerica|type=gene|length=4320bp|location=Sequence derived from alignment at sc0002046:242..4561+ (Clytia hemisphaerica)
ATTTGGAATTGTCTGATGGctcatattttcttttcttgatgGTCGATGGT
ATAAAAGCTGTATATCAAATCTTCCGAAATAGGTATGTACATTTTGCATG
TGTGATATATATAATGATTGCGAGAATAAGATTTGTAAACCTCTTATAGC
TATATAAACTATAAATAAGAATTGAGCCTAAAAATATGGGGCAAATGAGC
ACCAGTTGCCAGTTCCAAGTGTATATAATATACAAGGGTTGCAGTGTTGC
TTTGGTTCTATAGGAGATATCCATAATCAAATAAATGATGGAATATGGAG
ACGTGTTtttaggaccctgccgacgcaccggacttatataacgaacaccg
gacacgcgaaagtccggtgtaaaatgagaattttttttaccaccggacaa
tctctacaccggacttaagaaaGTCGTATGTCCGGTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCGGACTTAATATtgtgtccggtgtagcgaaaggatactttttgccacc
ggaaaAATACAccagacagtccggtgcgtcggcagagCTCTAGGGTCCTG
TGTTTTTTTTATCGGTCCCTTTTTTTTGAACAGTTTGGCCGCAGAAGATC
ATTCACCAGGATccaagtgaaatatttcaatctGCAGATCTAGACGGggt
ttggttattatcagttactGTAGGGTTAGGATTGGAGCTTCTGGAGCttg
agagtcacaatataatcTTTTAGTGGCATTCTCTATTCATACATATCCTG
AGACTTAATTTATTTAGGATCCCTTAGGCAGAGGAGGGATCCTTGTAGTA
GGAGCACTGGCTGACCGGTAGGTTTGGGAGCTGTATTAATGagggtctgt
aaattacacactaTAAGTATTTCATCATTTCTGTTCAATAGCAGGGGATA
TACTTTTTCAAGAGAATTTCATCTCAGTGAATATAGTGCTTTGTTGTTGt
acattcaattcaattcaattcaaaacatatatttacccgAAGGAAGGGAC
ACCAAGTTTAGAAACCTAATTACAAATGGTGCAACTTACGTACCATGGTG
CAACATCAACAtgacgtacacgtttttttttcataaggaaccttaacttt
gctctgagcctggagttccttatttttacagataatttcagcctcaaagt
tccttatcgagttccttatttacatagctgctaagTCAAATGAAAATGGG
TGGTTTTATGGAAACATCGACTATTTCAACAAAGAACTTGGAGAATACAA
GATAATTGCTAGTTCAAGTGAAaactcttactgttccttaagactttttg
gaccattttcagcctcgagttccttataaacgtgttccttataaaaaaaa
acgtgtaccactTGCattagccctcaaatgaatgacctgactggtcatta
aaatacaaacagtatagacttaaaacTTGTAGGTATATCAAGttacggga
tttcgagtgcgggccgattttactctcgttttgagtggtttcattttcga
tttcaagccaacgtCTTAGCAACGGGCTGcctgcccatagttacaggggt
ttgtgcaaaaaactaaacatagaaaattttccaaatatataccccatttc
gattaatgcaatgaaaaatgaaacttttctcacttttttgtacctagatt
cttcaaaatgaaaatatttaagatttaagttcttcttctattcaatgatt
ttttagggcactttgttgacaatctaactctcacatcaaattctggcttt
cttcagtaaattgaagatgagtaATAACCTAAGCCAcagatcacggattg
aaacaaatatattaagggtgggattttacagccagccgtcgtgcaaggca
ctgagaggccatgggtgccaaaaagaaggtcCATTTAAAAtgtggcaacc
tcattggtagaaatttgataaacagctacAAAGGAGCGCTgtgaagcaat
cagtagaagagaccactttcgtttttgttgcagattttgatataatcttc
tctcagggattacttgtcaatggtacatgtacacatgtgttgtgtcaact
tgtcagtaTTGTGCTGTTGTAAAGGggaagataaaagaggtaagactagc
ctagtttctaatcctcaTATAGGAGTTTTAAAAGCTTAGACtgacaaagt
taaatcaaaacaaaatggtagaatagagctgtgagcggagctgcgtaatt
caattgttttgaaattaattttgctgctttggttggtTAGTCATcggatg
gctatgcaagtttccctccactgatgcaagttacccgacttcataGTATG
ATTTAAAAACCACAGCATAATTTTGGTGTACAGTCTGATGCATCTGCACG
CTTCAGTTAGATGCATTGTGCAGTGCATGATCTGGGAAGTTCGGTGAAAA
AACCTAGATATTTACTTAGCTGTTTGTACCCACCAGGGAGGGCAAATTTT
CAGCTGTGTTTGTACAATATTTTAATTCATTTAAAAATGGACCGAATATA
TAGCAAAAgcatgaaaaaaattacaactGTGACTTCAAAGAGGATATATG
AGCTAAGCAATGGATAGCCTCCATACTGGATCAGGGGGTACCAGATATCG
TGACTTATAGGCTGTGGTGGGTCATATTTGATTTTTGCAGTTAGTacctc
ttacctaaggggggtcttgacccctctagaaactacgGTGATAAAAACTA
ATTACGCACCAACTGATCCCCATGTTGGTGGGTTATTTGAAATTACCCTA
CTAGGTAAAGGTATCCAAGTTTCATGAACTATTCTGCTGCTTTTTTACTG
CTTGTAAAACTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAGTATTTATG
TTTCTGTTGTGTACTGTCTGGAACTGGTATGCAGCAAAGTATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCAATCT
TATTCTTATTGCAGGGATGTTGGTTACATCGTGTATCCTGTAAGGCACTT
ATCAAGATACTCACTGAATGCTTCCTTCGAACTTGAACAGTTGAATTTGA
ATTGTCATTATATTGGATGATATGATTTAGAAGACCTTGGCCATGCacaa
ttaaattttcacaattgACTTGCAGCttcattcaaattttcgatGACCAT
GggtttatttcattttgaagagcAATTGTATCAAACAATTAGGACATAAT
ATTCTGCTATGAGATAACTTCTTCAGTAAtggagttgaaaaatatttgga
CATTCAAAATACTTCGTGGTAATTTTTTCAGGAAAGATCAAGGGATCTTT
GAAAAATCAGAGAAGAAAATGTTTAGTTACTTGAATAAAGATTAGAATTC
TATAGATAACCTTtccttttttcaatgttttatttaaattatcagaaatt
attcaaaaaaaggtGAAGTATTGGAAAAGGAATTCAAAAAGCATCGCTTC
AAAATAANACTTGAATAAAGATTAGAATTTTATAGATAACCTTtcctttt
ttcaatgttttatttaaattattcaaaaaaaggtGAAGAATTGGAAAAGG
AATTCAAAAAGCATCGCTTCAAAATAACTAACTGCCTCTCTACCTATTAG
ATTTTACTTTGcagcttgaaaacaaaagatgaGGTAGTAGTTATATGTCT
TCTACAATGATGTGAAGGCTTTGCTGCTATTATCCTGGTTTAGCATGCAT
CACACGGTTTTGTAATTGCCtgttagattttattttttataacatAATTA
TAATagtattcaagattttt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00039217TCONS_00039217Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002046supercontigsc0002046:242..4561 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.68	0.36	0.1	0.29	3.35	1.7	3.3	2.96	4.48	2.98	3.42	4.47	3.18	2.5	4.76	4.49	5.01	4.72	3.8	5.52	8.95	6.01	3.92	5.19	0	0	8.19	7.47	3.86	4.45