XLOC_021318 (gene) - C. hemisphaerica

Overview
NameXLOC_021318
Unique NameXLOC_021318
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001431:3451..13844+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_021318 ID=XLOC_021318|Name=XLOC_021318|organism=Clytia hemisphaerica|type=gene|length=10394bp|location=Sequence derived from alignment at sc0001431:3451..13844+ (Clytia hemisphaerica)
AAAAACTCCAATAAAATTGGACCCGACTGTACTCAGCAACTCATCAACTG
aacagctttcaaataaaacCACAAAAGCCAATATTTCATTAGAAATACCA
GCTGGCATTCAGACGTCAGAGAAAGTTTGTAACCTGATAACTGGTAATAT
TTTAACTTAGGTAATAAAGTCCTATTTattatagaccttttgctagctAT
ACACACAATGCATGTGTCCTGTGTGTGTGTGTGCATAAGTttattctttt
atcatttttttgataattgaaCGTATATAATTGAAGCAATCgtaatcgaa
cggcaaatcctgagtaatattcgattgcgattcgattgcgttcaacaatc
gaattgcaattattcgattgtgttcaattgcgttgtTCAATTGATTTGGC
GTTTGATTCGTTCGATTTACACCGTTCTAGTGATGCTCTGCCTCTGGACA
CTggagcaaaataaaaaaattcgttcGACCAAGTTTGGTAATCTAACCCT
ATCGTTTGATTTCGTTcaatgaaatttgatggttcgattAGGAGAATCCG
TTccatagggttcggttgacattgCCTGAACTAGCGTCCCACCCCtatgg
atttcgtgtaactaacACCGAAGATCTTtggtagcaactccagaagattt
ttcaaattttaattttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtaaaaatgtcaaaaaaaaggttaggaaaatagct
tggaaaaattcgaaaaatgtgtcaaaaaagaaaaaaaagaaattttccag
tcatgcttcttcaattttgcatgTCTCtctttctagtgtagctagatacc
tgaaatttggagggagaattctttgatggtgttagaatattattatataa
aaatatttgtaaaatatttagtatatttatcaaaataatgggccattcca
gtttttattcgttacccccaatggacgacatggaatttccgtagcaaatt
gcttttAAGAAAGTCCagaatttccgtaacaaatttacaaaatacctatc
aaaaccgtggaattccgttactgtaacctagaaaaatcatggaattccaa
tacgttaatgcaaaattaagtaaaattcatggaattccgatactttctct
ttaaagtttgcctggaattccgtgccaaaatttatttcaaaaattgatgt
catccattagggggtaattttttttttctggaatggcccaatgaaagata
tatgtttttttgaaaaaggaagacattgcattgttttatttttgtttttg
aagaaaatgagcttggaaaaggttgaaatgagtcaaaaaaggtggcagga
cccattttcaaggggcctctggaaatggaggaacaaaaacttatcaataa
agaataagtttttctgaaaggagaaaccccaaatgaaaagaaaatccatt
tcggcagaaataaaaacttttttttgggacattcccatgcaaaagaagca
aaaaagtgaaaaaaactacatgaaaatgaaagaactaagattagcgaatg
tgatttttgaattcctcatcctttttctgataaacatacaaagtttcagc
cttcaaatacattttcctccgtttccagaaacatttgttcaGCAATAGTT
gcacattttttttctcccgtcggcaaacaattttcaaaatgttgcaaagc
gttcggcattttaccaatttgccgtctagcctgtgtccacagtgttatat
agcgctggaaagctaagctttcatttagtaaaaatcggaacgctttagca
tacatagaaaaaaagttcgaagggttcaaagttcacggaaaaatgaaaca
tttggtttgacgtcaacgaaagttgcatgacttctggaatCGCTATCTTt
ggcgtacaactgaaacgtttttggcgcattggcgtaagggtaattacaaa
gattgttgtttttcagttggtgtaaagtaataattccagctcggcgtgaa
tgactccgTAACCCATCGATTTTCAGCtttcatttggctaaatttgcttt
cgctTGCTTACGCTCGCGTAAATTTATTAATcatgttggcgcatgcgcct
ctcttcccatcttgcacccttattgaaaaattgaatgttggtacaaaaga
aattttgcttggcgtgaggcttgctgtacagaaaaatatcttcggcgcga
gatttcgtggaatccatactgggtcccaccaaaatgcgtatcaaagatta
atgctatGCGAAAATGCTAATATTGTTTGTTGActcacaagcaaaaaaat
gcacaaaatatcgcagaggctaatcaattttaatgacttttttgactaat
gaccaagttaaaaatttttaatttttttatatttgagtattaaaaaggca
tgcattcaaataataaaggtttatataaatttttctctgggctagttagt
aaaatatctcaaataggctctgcgatggagtgtaaggctgaaagccacat
gaatatggttcatcctataaaaggaagttcattctatggtggcctatctt
gaagtgaaggtggttgaacaaaatgtttNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNtcacacaaataaattacgctgggaaagtccgcgag
gacaacacgcggtcttaacatttttccctcgcaagtttggggggaaaacg
aaagtactctatattttgcgcatggggaagtgtaagaaagacttacaaaa
tagaaaagttttgttttggggtaaagaatcagtattgtgaatttaagcga
gtttctattttgcaatttttctacagagccaaataaagattttttctatt
gttcttgctcgattgcctctaagGGTAAGTTCCGTAGGAATGAGGCTATC
GAGACATAATGTGACAAATTTGCGGGaaaacgaaatttaacatttCTCTA
GGCTGTAAACAAGACCTTAAAAATCAgagctgtctcgggaattgaatgac
aaaatttggtttcttgatattttggctgCTGCAAGTTCGCAAccggtcat
tttgtctcattttaagttttcaagtcttaattaattgtcttgggaacttg
aacttgattcaggtaactctcatccttgttgttgcaaatacatccgtcat
gtagatgactgatgttgttttttctgaaagcttgatgttgctttttctga
aagcttgatttcctagtgcgACTACTGGTTGATTCCCGCtgagtcactga
gcagaattttcgcgggccactcacatatcgatttttcCCACGCTTAGCGT
CATTCCGATGCTAATTTAAAAAACCCACCCACTCCCTACCCTTAGCATCA
TATTATGAAATATACCAAAAATCgttgaaaacctttttttcctTTCTCAC
TTCAAGTATTGATGTTCCACTGCCAGAGAAGTTGCTTCCCCTTCTGCTTG
ATATtacattccattgtttttttaNcagcctggagacttcaaaaattgtt
cgatttggctgaaatttggcacacttgttccttgggtgaatatctggggg
tgtttttttcatttttgaaaattttgatttttggggcctggggacgagct
ttttgccaaaatgaggctaaaactttgggggNAGACCTGATTTTATGAGC
GTCTCTGGCATTTTACTATACGGGTTTATTCTTGATGCTGTGAAAAAGAG
ACAAATTTGAAGTGAGGATGTTTTAGTTTTGTTGAAAAGAGGCTGCTACC
TGCAAAATAATAAGTATGAAAGTTAtagttttctggaaatttgaacaTCT
CTTGGGCCTCGAAAATCGATATTTCTAGTAGATTTTCTTAGCGACATCCG
ATCCAACCCACCCACCCTATAGCGTCGGGATGACGCTAAGCGTGGgaaaa
atcgatatgtgagtgtttgaagaaagaagaaaaatttcacACCCAGGATG
GGACTAAACTGCAAGAAtgttattctcaacttcagttgagttagaatctg
agaatgtgtgtgtgtgtgtgtgtctgtctgtgtgtctgtgtgtctgtgtc
aTTTTtagaatcctcaactatcctagtttaagaaatgcttggtccccaaa
gctaattcctggtcaatttttcatactgggcctgAGTTTAGGGGGTACNa
acgaggctaaagctttgaagcagcctacaggcctccaaaatggtcggatt
tggttgaaatttggcacacttgttcattgggtaaatatctgagggtctac
aattgggcctatgaataatttgaagccactgaagttgagcccagtgcgtt
gcgcacgtttgACTATATATAATAAGTGTGCNAAAGCTAattcctggtca
atttttcatactgggcctgagtttagggggtactttttaccctttgtaag
gatttgttaaggaaaatatatTTCCATGTATGATACAATTTGTTATATCT
CATGAAtaaattgaccaattgctttgaaactttggcaaaagtttcaagat
agattggtgatcatcattggcaaaaattctttaagaaaaattatttttgg
gggtTTACCTGGGAGGAAAAAGGggaaatttgggtattttcactgaattt
tgacactctataagactgggacctaccgaaacaacttttaatgagacaca
aacttTTTGTTATGACAAAATTTAATGCGATAcaccagaaaaatttcttt
tcaactgTATATAGTATCATTTTCAAcgcttcagggggtaaaaaatgccc
attttattgaattttgacacaatttgagcaattttcactgctTATCTCGC
CTAAAATATATTNACACAAAACCAGGGGTCAATCAACAAGTcgaatcttt
ttttaattcaaaactaACTTTTATTCGATGAAAAGTCTTAGCCCCTTGAA
TATCAAATTAAAGAGAGTTAGTTGTAACAGTTTTTACATGCTCCCCTTTT
TGGGGGCCAAAAGCTTTTATACCTTGGGTTTACCTTGCAAGTTTGAGTGA
TCCTTTTTACTTGCATTCATTTAGTATAGGGCTTAAATAATTTTACAAAT
TACAGGCAAATAGATTATTCAGTGTGGTAAGAAATGTAACTGATTTTGGT
AAAAATTCATCAACCATACAAAGTTCTTAAAATCATGCAGCTTGGTGTAC
CTAAAAAAATATGGAATCCATGCAAACATATGTTTCCTGATAAGATCAGT
GCTAAAGTGACTTTAAAtggtctaaaataaaaaaaatgaaggatAGTTCT
AATgctaataaattttaaaatgattttgataggTTATACTCAATGTGATT
AGAGTTTTTGGGCCAATCTCTATAATTCTTCTAATCTTTCAgagcatttt
ttaaattctttcttTGAGGTTTGAGgggatatttttttcattcaattttc
aaaaccttGACAAAAAGCAAAGATTatcttttttttgtcatttggcAAAG
TATACCAGGAAGACATTCCAAACATACTACTTTTTTGAAGACATGACTGA
ACGTTACAATGGGGGTTTCAGTTGACATTATCAACTTTACATCATAGCCT
TTTCTACACTACAATCACATGTCATCAAGTGTCAattgttttttgcaatt
ttgtatGCTACTAATATTTAGAATTATAACTTAAAATGGTCAGCAGAACA
GACTAATTGCCGAGACGGGTGGATAGTTTTTTCACTCTATATTACAttat
gaaaaaaggaaaaaaggaaaacttaTCAGAGATATCATATTTTAAATACA
CTCAATATCTCATTTTTCATTGTAGACACCAATTTAAAGTGAAAATCTTA
TCAACCCTTATTTTTGATGTGAATTTTTAATCTCATTTTCAGAGATAATG
TTTAATTTATGCTTCAATTTTGTGGCAAGAAGGTTACTTTTCCTTTTTGC
TTTTCCTTTTGGTTCAACTTGAATGGTGCATCTTTTCATCTTTTCGTCTT
CTTTTCTCTGTTgctaaaaagctttaaaaataatgacgtttgttattctg
aaaatgtTCTTCTTTGCTCAACCAAGAAGACTATttacaaaaagtccaaa
aatgtagtttgtatatttttagtcgataaaaacaaaatgaaaatcactGG
TTGAATGAGGAGAGAAGATGCCAGTACAGACAGTCGTAGTATCCCCCATC
ACTGGCTTGTTGGAAAAACATGctcaagaagaagaagatgaagaacaaaa
cgaaatcaaagaaGAGGTATACGCTCCAATCTTTTTATTACTTCGTCTGT
ATAAATATTAATATTATCTTCTTCAGACTTCATCTGTTTGTTCAAAAAAC
TTGACttttttataaagtttgttttcaattcCTTCATTTTTTGGATTTAA
TATATAATAAGCAGATAAACGGTTTATTTTGGAACAGTTTGAAAGAGTTG
TTCTTTAGAAAATTTGCCATAACCTCTATTTGTAAAAGTTACATTGAAAC
GTTGTAGGAACAAATTTTAGAAAGTATTTGATTTAAAATACATTGTATAT
TACATAAGGATGATATAACTAAAAGATATATAGGAAAATTTGTAAGTGAA
AATGTCATAAATTTGTCAtcaagaaatttatcaaaatcagAAGTATCTCT
TCTTTCAAAGGGTTTGAAGTTTGTCCCTACTCCTTCTCAAGTTAATAAAA
CCAAACTTAAGGAGGAGCTTGCGGTTTTTGGTCGGAAACTTAGGCTACGT
TGGCATTTTCGGGATGACGACAAGGAGTTTATTCCTAAtccttttgttaa
aaaaagcTCCTTTAATCCCAGGGGTAAAGATGCAGCCATTGAGGTATATT
TGAGTCGTTTGGAGGAGGAGATAAATAAAATTGATACAAAATTGACATAG
AATAATCTTACACGCTCTGAAAGGGAGGCCTTAGACACTTTAAGAGATGA
CTCTTCAATTATCATCAAAAAGGCTGACAAAGGTTCAGCTGTGGTTGTGT
GGGACAGAGATGACTATCTGGCAGAGGCTGAATCTCGGTTGGGGGATGAG
AGTGTCTATGAAAAACTAACAGACACTGTGGAAGTCACCTCATTGATGTT
ATTGAAAGTTGTCTCTTAAACATAAAGGTAAGGGGTGATATAGGTGATAA
GACTTTAGACTATTTTCTTGTGAATAATCCTAGGTTGGGCAGGTTTTATC
TTCTCCCGAAAATCCATAAGCGTCTTTCGAGCGTCCCTGGGACCAGTCAT
TTCCAACTGTGGCTACTATACCGAAAACATCTCAGCCTTTCTTGATTATC
ACCTTAAACCCCTTGCCAAAACAGTAAAATCTTTTATTAAAAGGACACca
ataattttttacaaaaattaccAGAGCTTCCAAAATTATCTAAGAATAGT
TTATTATGTACTATTGATGTCGTAGGACTTTATCCTAATATTCCTCATGA
TGAAGGTTTGGAGGCTGTTAGAAAAAAACTTGACCAAAGGCAAGACAAAA
AAATCTCAACTGAATCTTTGGTTGAACTTGCTGAATGTGTTCTAAACATA
ATGGTCAATTTTTTAAGCAGAAGAGGGGTACGGCAATCGGGACCAAAATG
GCCCCTCAATATGCTATTATTTTCATGGCAGACTTGGAGGAAAGGCTTCT
GGGTGCTTGTGAGTTAAAACCTAAAATCTGGTGGAGATACATCGATGATA
TTTTTATGATCTGGGAGCATGGGGAAGAGAGCCTTCAAGAATTCATGAAA
ATGATTAACAGCTTTCATCCCTCCATCAAATTTACCTTTGAATACTCTCC
GACTTCTGTCAATTTTTTAGATGTCCAAGTCATTAGGGTTAATGATAAGT
TAGTGACGGACCTGTATGTCAAACCTACTGATACCCATCAGTATATGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATAGGCCTTTTATGTTTTCCCTGGTGTATATAGCGATATGT
TTAAAAACCTtgtcaaagaaattcatttttatGTTGAGAAAGGCCTTTTG
GCCGAAATATTCATGCAAAAAAGACGTGTTGTTTTTGATCAGttgtatat
tacattatatgaTTATTTCTTTTCACTTACCTAGAAATCAAAGAAGCCGG
AAAGAAGTTATTCAGTGCTCTCTATCATCTCAAATGGGGCGAACATTTGC
AAGATATGTCACAGTGAAACAGAGAAAGATGACGAACTCATCACACCTTG
TTACTGCTCTGGCTCTTTGCTCTACGTTCACCAGGGatgtgttcaaaagt
ggatCAAGGCTACGGATGCCAAAACCTGTGAATTGTGCAATTATAATTAT
CAAGTGAACTCCACTGTCAAGCCAATCATAGAGGTGAATTTTAATTGGTC
TgaagtttttctgaaaagttAATGAAGAAACATTTTGTGCTTTAGACCTG
GGTTCTAGGTCGAGTCTTCTTCGATCTTTTGACTTATTAAACCTTTTCAG
CGATCTTATTTCTTGAGCCTACTCTCGTCACGAAATAATCGATAGTTTCG
TAATTCATATGTAGCAGAAAAATACGACGTGAAACCGCGAAAGTAACATC
ATAGAAATCGATTAGGATTTGAGAATAATCAGGCTGTAAATAGGAATTTA
GACAAACTCTAACCGCCCATTTTTTTCACGCCATTACATTAATATCCTCA
CTACTATTTCATGGTCCCTTTTCATATCATGATGAAGAAACAACAGGTCT
TGTATCTTTGTACTTTCAGTGGAAAACGTTAGCGTTGACGCACAGCGAAC
GACGGAAAATACTCTGCTCCGTTGCATTTCACATCGTAGCTGTCACATGT
ATCATTTGGTCATTATGGGTGCTCATTGACCGCACTGTAGAGGAGGTCAA
AGATGGAAACCTCAAGTGGCCTTTTTGGACCAAACTGATCGTTGTTGCTA
TTGGATTTTTTGGAGGAGTAGTTTTCATGTACGTGCAATGTAAGGTGTAC
GTCCATCTCTTCATGCGTTTGAAGGCCTTCAATAGGGTGATTTATGTTAA
GAGTGTTCCCGAAGATGAAAGACAACAACATAAAGTGGACTTAGTTGAAG
GGAACAATCAGCTGGAAAGCAAACTTTAAATTCCTCTTTTCGGGAAATAC
CTTTCTGTTTATTATATTgatgtttagattttttcaaattatttacacaT
TTATAGCTTTATTTCATCAGTATGCGCGCCATATACAATGTATATGAGCA
AGTACCTTATATTCATTTAGCTAGAGTCCGCGTCATCTTCCTTCAGTTGA
TATTCAGTTTCAAGTGGATTTTTTCTATGGTTCGTATAGAGTGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00036246TCONS_00036246Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00036246-proteinTCONS_00036246-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001431supercontigsc0001431:3451..13844 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.13	3.84	2.45	2.91	22.13	18.06	38.37	43.26	43.43	40.94	30.94	35.2	19.98	18.37	14.82	16.37	30.72	30.36	22.94	28.39	27.21	29.33	20.8	23.58	27.44	24.86	31.07	24.8	16.93	17.2