XLOC_013855 (gene) - C. hemisphaerica

Overview
NameXLOC_013855
Unique NameXLOC_013855
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000507:21611..32093+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_013855 ID=XLOC_013855|Name=XLOC_013855|organism=Clytia hemisphaerica|type=gene|length=10483bp|location=Sequence derived from alignment at sc0000507:21611..32093+ (Clytia hemisphaerica)
ttttcagagtaaaacaaaaaaaaaaggttgaaaaaaaataaaaatgtgat
ACAATAAGATCTACAATGAAGAAATGGACAAAGTTGGTGAAGAAACGTTA
AGTCATGCCACATTTGGCTTGATTGCCTTACTTCGTAAGTGCGGGCCTTC
CACGCCTTCTAAAATTTCTGACTAATAGACTCAGATCAAGGGATCTTACC
TGGAGAGAGTGGAAGATAAAGTGAAATGTGCACTGTAGTACACTGTCTTA
GCCCAAAAAAGATACAATTTTCCATAAAAAgtagtcaaaatttcaagagt
ttttattttttaaatctcctATCGCGAGGGCCGTGTAAATGAGTCGATTT
ATTGTATTGTTGTTGGCATTTTTtccaaactttctttttatgCGATCTCT
TCTCATGACACTTTCTTACAACAGTCTTTTAATAAAAGGTTGTTTGTTAT
CTCAACTTTCACATGATTATCTAGAGGAAAAGCCATACGTTTGTGACATC
AAATTCAAACAGAATGAAGCCGTGTCAAAAAACATGCTCACTGTTTGGGA
AGAGGTTTGAACACTATTCctaattatttgtttttttcgttttacGACTA
AACTTCTTCAAGTTTATGATGACCNTTATTCCTAATTATTTGTTCTTTCA
TTTTACGACTAAACTTCTTCAAGTTTATGATGACCTACaggtgtttttat
aagaaattatataagaacataaggcctcgatgtcaaaaatattaacaaca
acttgagaacattttatgactctaaaacaccacaTTTCTTCAGAAAATGG
ACTAAAATACTCAGAAATGGCGAGAACATTTTTTGGCCTAATTAaccttt
aaaaagtttttaagaacatccgaaggctttaaaaaatttggattttctta
taaaaaaacgtgtaacaagAATGATAATTAAAGAgtccccccccccagcg
gaccttcatttgacgcaatcacgcaatttttttcccaaattcatgcaatt
tttgttcacgcaaggccttccaattcacgcattcacgcaattctttttaa
attttaacgcattcacgcaaacggTTGGGGGAGCCCTATTAAAGGTACAT
TGCATGCTCTTttaataaagccttaaaatgttcctaaaatgtttttattt
ttactattttgtgaatattgaTGTTTAGTTTACCATATGAATGAACTTAA
ACGGTTTAATGCTTCTTAATTTCTGTACCGAGAATGAGTTTACTGTTATG
GGATCAATGTTTCAACTTCCAAACGCCCTGAAATGCACCTGGCAACATTT
ACGTTCCAAACACTGGCACCAAATCGATCACGTTATCGCCAACACATCGG
CAAAGCATAGCATCAATGTCACTAAAGTCGATATCCGTGCTGACTGTTTC
ACCGACCATAGACTTTTAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGAA
GAAAAGGTAAAAAACCGCCTCGAAAACCTTTCTTGAACATGAACGCAGAT
AAAATAAAGCAACTACAAGATTACCTCAATGACAACCTCGTGAGTAGACC
ATGTGACTGGAACTCCTTAAAAACTACTTTACAATCCGCCACCGAACTGA
TCTCTGAAAAAGCAAAGAAAGTATCTCACGATTGGTTTGATGATAATGAT
GTGCAGATTCTTGCTCTTCTAAGAAACAAACATCTTAATAGAAACGAGCT
TCAGAAACGTATTcgtcaaatgaaaaatgattggTTTGTTGAAAAAGCTA
ATCAGATGGAGAGGTTTTATCTCGAGAACAATATTAGAGACTTTTATGCG
ACTTTACGTGAAATATACGGTCCTAAATCCAAGTCTACTAATCAGATACG
CTCCAAGGACGGCACGCTTTTGGTTACCGCAACTCAAATCAAAAGAAGAT
GGGTCGAGCACTTCTCTGAATTACTTAACCTCAGATCGGACACTGACGAA
TCCGTTCTGAATGAAGTTCGACAGCTTCCTATCGACAATTCACTTGCTGT
ACCAATTACTCGAGATGAAATTGATAAGGCACTGAAAAGCACAAAATTAA
GAAAAAGCCCTGGTCCAGATGGGATCCTTCCGGAAATCATTGTTTTTGGA
GGTGAAGCACTTCGAGAATACCTATTGGAGATCTTCAATATCCTTTGGGA
GAATGACAACATTCCAGCAGAATTGATCAACCCTAACATATGTATCCTCT
TCTAAAAAGGCGATAGGAGTGAGTGTGGTAACTACCGTGGAATATCACTA
TTGAGTACAGTGGGAAAAGTCATCGCAGACATTGTTTTACAAAGAATTCA
AAACCTGCTTCCTAATGTATACCCTGAATCGCAATACGGCTACAGAAGCG
GTAGAGGAACAGTCGATGGTATATTCACCCTACGTCAACTGATGGAAAAA
ACCCGCGAACAGCAATGCCACCTCTACATCGCTTTCATCGATTTCACCAA
AGCCTTCGATACCGTTGATCGTCCCCTACTCTTCGCTATCCTTGAAAAAA
TTGGTTGTCCTCAGAAACTTGTCAGCTTGATCAGAATGCTTTATACGAAT
GTTGAAGCCCGCCTCATAATCGATGGTTAAATGTCAAACCTTTTCAATTA
CAACAGTGGTGTCAAACAAGGTTAAGTAAGCTGGCTCCCACTTTATACGG
TATCTACGCTGCTATTCTACTTTGGGTTGCCTACAAAGACATCAAACACG
AACACTCAGTACTGATCAGATTCCGAACTGATGGCAAATTTTTCGACTTG
AGAAGACTTAAAGCAAAATCAAAGGTCTTCCTTGAGTATCTTCGTGAAGC
TCAATACGCCGACGATATTGCCATCGCTAGCAATACAGGTCCTGGATTGC
AAACGCTTCTTACATCCTACAATCTCACCTCTATTCGTTTCGGACTTATG
ATAAATGTTAAGAAGACAGAAACCATGTGCATCGGTCCTGAAATCACATT
TTTTGTCAACGAATCACCGTTAAAGAATGTCAACCGCTTCAAATACCTTG
GAAGTTTCGTTTCATCTGATTGCACGCTGAGGGAGGAAATTACAGCACGC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATGGCGCTCTGG
TACAAAGAAAGTATGTACAAAGTTAAATGAAAAACGTATTCAGAGCTATG
aacgaagaaaacaaaaaagaagataGTTTTCATAGTATTTACCCTTTTGT
AGTAGACATATGTATATAAACTTGTTAGTATTTTACTCGACACCGAGGCT
AggcatattattattattatttaccATAAAATTTGGTGTTAAGAGTTTGC
AAAGCCTgaaagtgttcttaacttgcaCTTGCATTTAATATTTagtccat
cgaagccttatgttcttataattttCTTTAGTAAGAAAAGGTTCAGCTAA
CATATTAATCTTGTCTTTACCTCATGCTTTTTTCAGGGCAACCAATGTCA
ATTACCATCTGACTTGAGACAATTTTATGAAACAATGAATGGTCTACTGA
TTCAGtggaaaatcaaattcaatggTACGTGGTGCTACCCTTCCCCTAGT
GTTTCACTTGGTTTTGACTTCTCAAACTGTCATAATGCTTTGAACAAAGC
AGAAGAATAACTCACCCCAAATTAGTTCGAGTTAATGAAATCTCGAGTTA
AGGATTAGGCATTATTGACTGAAAGGACGAGAAagcttgtttgagttaag
gaaaaaATTCTGGTTGTAGATGTTCGAgataaagagactctactgtatat
tATCTTGAATTAAAATTTAAATCATAAACAAGAATGAAATCCCTGGaata
gtttttgtttttgttgtaagGGATGCGAATCAGACTGGAAGAACACGCTA
ATCATGTTTTAAATGTGGTGTGTGATCCCTTTTATTCAACTTTTGTCACC
AGATCTGATTAAATATCAAACTTATGAACTCGTGTAGTACCATAATATCC
TTCCTATGCTAAAATTTTAGTGACATCAACGATTCCCACCTCAAAAGAGT
TGATGTGATTTTGGGGCCGATATGCATCCCTTAAATCTAAGCAAATCAGA
GGGATACTGGCAGCCTATGTGGAGAGTTTGTTCTAACAAGCCCAAGTCAA
CTTCTGTATTCTTATTTCGCCAAACTTCCTGAATTTTCAATAAGTTATAG
TTTTATTTTGCCAGacgatgaaattgaaattggcTTGATCGAGATTAATC
CCATCGAATGTTTGAATGGTTTGGCTATGCGAATGAACCGTAACGATTTG
ACTCTACAAGATTTTCAGCTGCCCAAAGATATCACAATGGACATAAAGGG
TTTGATACTAAATTATTTCCCCACCTCAAATTTCTCatttgaattttatt
agcttaagggaacttattttggcgagaactacttttggcgaattcggcga
atttagacaaaattcgccaaaattagtctccgccaaaattgaatattata
ctcacttgccaaaataagttctcgccaaaattaaattttttggtattttg
cctaaataGCTTCTTGAGCTcacaaaaaaagcttcaaataaggcaaaata
gtaCAGATTTTATGCTGTCAATCggcaaaataagttctcgctaaaattaa
aaattttcagaatttattaCTTAAAAAGCACAAActtatattattattaa
tttctaAATACAGTAGTAATCGTTAGAATTTCTTGATATATCCTTTGAAC
GTTTGAAGGAATGAAGTAAGGAAGGTCACTTTGTGTTTGATTGCATTAAC
CAGTTTTAACCAGTATGGCcgagtttttggacctaccccggtggggtgga
ggtcctataaattcacctctgtccgtccgtccgttcgttaccagcttttc
tcgagattgaatcataggaatcNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAaacggtggtggccaaaatgtgacggagcccgat
tttcgaaaacaaatttttttgggcaaatttgggccaaaaaacggctaaaa
aacgggttttttggactctgtgaaaaattggatcattaattttttctgat
tttttgaatgaaagtagggtaccatcataggtaaaagatggctcaagcag
atctttgcaaaaaaatttatttggcttaaaaaacgcatgtttatctataa
gaatcactattaataagcatacatcaatgttcttagtcaaattactcaat
ttctttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNactggccaaattcgatatttttttataagcacattatcgattact
taggtattagcttttctcgagattggctctttcattctttatgatttttt
gcacaaagatgcataacaataaaccctcgaatgtgactgagcccgatttt
cgaaaaaaaatgtttttaggcaaatttgggccaaaaaacggcttaaaaaa
gggttttttggacattGTTGAATATtcgatcgttgtttttttctgatttt
ttgcatgaaagtaggtaaaagatgggtcaagcagatttttgtaaaaaaac
tattcagctcaaaaaacgcatctttatctataagaatcactattaataag
catacatcaatgttcttagccaaattactcaattttttgatgaaatagaT
GTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtttctaaacgttttttttataagaaacaaacgactaattttaataaat
cgtcactatttgtgttctgaatgattgtttaacgttcatgctcacgtaga
tatgaattataaatgtgttaaatgcataaccaggtaggtccataaatgTA
TCACTTGTATTGTTTTTAAATCATCTTTTGTTATGTCACCGATTGTGCTA
AGTAACTAGGACCTTTTGTCATTGTTAATCTCAATCAAATATCTAATTAC
CTGTTTATGGCACCGATTGTGCTAGAAATAGCGTCTGCTATTGTGAGCTA
CTTGTAATTTTGGACCTTTTATCTAATTTCTTCTTATATTGGTTTAGTGA
ATCAAAGACCAATTCCAAACTTCAATCAGAAGATCATGGAAATTAGCTCA
GACGGGCAACATGGAAAAGTTTGCCTGCTTTTCAAAGGTATAAGTAGATT
CTTGAATGATTATAGCTTTATggtcaacatgaaaaatatgagcaatctga
tcggctaaaaacgcgtacataaatgctgtttttgtgtttgttgttgtttg
ttaaTGATGTGTTGCTTAAAGGATAAACTTCTGGGCATGGGGCGTTTTTA
CTACAGGGAAGTGCCACATTTTCAACTTCGTGATATATTTTGTGATATAG
AAAGGATGCGCGTCTTTTATGctgaaaaagaagaattaaGAAAATAATTA
TCATACTTTGTGCTTGTGCGGCGCAGTTTTGTGTAAAAGTTGTTTTTGCC
TTTGCTAAAAAAATTATGTACGATTGCTTACTCGAGCCGCACTGACGAGT
CCTTTGGAAAGACGAAACAAACGTCTACTGCGGATAGATATCAACAATAT
TGAGCTGTCTGTTAGCATATAAAAACTAAGAATACTTCAcgcttcagatg
gtgataaaagtatgaaatttggcacagatgatccttagagggtctaaaac
ttaattttattgcttttaattCATTGCTTTTTCTGATTCTGATGTTCAAA
Tttaattaaaagctttaaatcccacagaatactaaaacttagattttgag
atttacaaggcaaatcaaGGCAGCGTTCTCCCTTCAGGAACACAGTAAAC
AACCGActaattttttggatgttttaagccttcctatgtcgtttagaccc
aagcatcagaAGGAACTTCgaattttgacatggattcatgtataaaacac
caaatttggtcaactagttccgttattacgggatttttaggttttgcctg
gaaaggcttatgataaCGTCAAACTTTCAaccttcaaaacttttgatagg
aagattttcaaggcatgctttatacctcgattttcatcaaGCTGGAACCA
TCAGAATTtgaatatttagaaaaatatatttaaaagaataaatctttttt
cagccacctgatgacgtcatctggtaGGTGGCCAGGTtgaaaaatttggt
gttactgtttaaaattaagttttagaccctctaaggatcatctgtgccaa
atttcatgcttttatcaccatctgaagtatttttgtgctaacctCACtac
aacaacattttttcaatagAACTTTTCTAGATATCAGCTTCCATAGAACT
TAGTGTAACAATAATACACATAATATTTTAGTGTCtctttattttttcag
aaaatggcaATATTGAGGTTTGGCTGATTGATTTATCATTGCAATGGCAT
TACCTTGCACCGTCATTCAGTCATTACTACCGAATGATGGTCACACACTT
GGGAATACGTGGATGGCAATTCCTTTACACCGAATATGGACTCACTCCTG
AGGCGAAGGTTTGCAAAGAACATGTGTCCGATTGATTTCTGCTTGTTACT
TTTACGGAAACACAAAAAAGACTAGCCACTAGTTTTTAATCAAACAATAA
AACTTGTGGCAAACGCCTAAATTGTCTTTGGTGCTTCGgtttaaaacatt
acgtcatgaatatcatgaaattAGGTATTGAGAATTTTTCTCGGGATGAA
ACGAATTATACAGCGGAATACGGAAGATATTTTTGCATTTGTCATAGTGT
CAACTGTTACTATAAGCTGTTTTTTCGTCTTAGCAATGGTTCAGTTTCTG
CCTTCCACATCGACTAAAAGAAGACATATTCCAAAAAGAAAACGACcaca
aaccatcaaaaacaacaaataaagTTGACTTTGCATCACTGTTCAAACAG
AAAAAGAAGACCAAGGACCCCAGTACTGGCACTGCGTCCTCAAACGAGCA
GAATTTAAACAAGCGGAAAAAACAGCCTGGAAACCTGAAGCCAAGGACAA
CAGCTAAACCTCCGGCTAAATTAAACAAAGCTTCTTTTAAAAACCCATGA
GTCGATTTTCGGGTGGAAGGCGTTTGTTCAAGATTGATATTAGCGTTGTT
ATATCTTTGAAGCATAATCTGAGGTttacattgggcttttccagaaatag
tccgcccccccccctgttgaagATATCAGATATCTaaggggttaacgatt
tttgttcaaaagtggatatccagggggttaaatatctacaagggagcgga
tatccaggggtaaagtgtcttttcaagtaaaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00024685TCONS_00024685Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00024685-proteinTCONS_00024685-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000507supercontigsc0000507:21611..32093 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
74.31	74.84	88.56	80.97	62.73	50.85	43.65	43.58	30.69	26.02	28.79	26.78	13.5	12.38	13.91	13.25	17.7	17.73	9.4	10.44	12.25	9.85	33.17	33.81	39.32	38.78	10.15	6.09	17.1	19.22