XLOC_013328 (gene) - C. hemisphaerica

Overview
NameXLOC_013328
Unique NameXLOC_013328
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000460:63984..69321-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_013328 ID=XLOC_013328|Name=XLOC_013328|organism=Clytia hemisphaerica|type=gene|length=5338bp|location=Sequence derived from alignment at sc0000460:63984..69321- (Clytia hemisphaerica)
GCTAAGAGAAGTAGAATTTGTGGTCTTCTCGTAGACTCGAATAAATACAA AAATACAGTGATTTGAGAATGTTATTTTATAGAATGGATTTTATCTCTGT TATGGTTTGTTTCTTGAAAATATTCAAAAAACCGCTTTTATTTCATGGTT TATTGTGGTCATTTTGATCTTATCCTGAGTGTTTTTGTATTTTCGTCCTT CCGCTCTAGCCTCTCTTATCTTTTCTGGGTGAACACAGATGGAATTTCTT TCCCTTTTTATTCAAAAATCTTTATGATGTAGTTTTATAACTGCAATGGT TTGGTTGAAAATCTTCACTGTATTTTGAGCTCGTTTGGATGGGAGATTAC CATCTAAGTTTATTGGGGGGGGTTTCACTTTTACGGTATGACGGTATTGG GCCTTTTTTTTCCCNACCCCCCCTTTATTAGGTGTTTGTGTTTTTATTGA ATTTGAGCTTGATAAATTTAGCTAATTTATTAATGGAACCATGTTGTTCT GGGAATTTTCTCTCTTCCTCTGCTGTTTTGATTTTGTAAAGCAGTCCCTG AGTTCTTAAGCATTGATTGTCATAATATATATTATAAAATGGACTGGATA TATATGATAAAGGCGGCCATCGAAAAATTGTTCTGTTCACATCACAGCAG TTAAAAATACGTGCGGGCCCAGTATGGATTTCGTGTAACCAACGCCAAAG ATCTTCGGAGTACAACTGAAACGTTTTTGTCGCATTGTGGCGTAAGGGTA CTTACAAAATTGAAAAATTTAATGTTGGTGCAAAAGAAATTTTGCTTGGC GTGAGGCTTGCTGTACGGAAAAATATCTTTGGCGCGAGATTTCGTGGAAT CCATACTGGATGCGGGCGGGCGTACGGGCGGCGGTTGGAAAGATTTCTAG GTTTTTAAAAATTGCATCATAAAGCCAATTTCTTCTTCTGATTGGGATTG GGAGGGCTGTATCTGTTTGTGTTCTTGCGAAGTATAGCTAAAATAATGCT GTTCTCCCCCTACAGTTGCAATCTAATTTAGCAGTGTTATTTGTTTTGTT TATGTGTTCGTTTGTTCTGCAGAGAAGAGCTAGAGAAAAAGCTATGCAAT TTGCTTTTTCCAGGATTTTCCCGCTTCTNTTCTCCCCCTACAGTTGCAAT CTAATTTAGCAGTGTTATTTGTTTTGTTTATGTGTTCGTTTGTTCTGCAG AGAAGAGCTAGAGAAAAAGCTATGCAATTTGCTTTTTCCAGGATTTTCCC GCTTCTCCACATCAGGATGGAATTGTCAGTGGAAAATATGATAAGTGTGG GTGAGACGATTAGAACAATTTTTTGGTGGCCACCTGATGTAATGCCAGAA ATTATCAGTTTCTTCCTCCTGAACATTTGAGCGTTTGAAACTTTTTCACA AGATATCACATAAACCATAAAACAGGCCTCCCGAGATGTGATAATTGATC TTGATTTAACCAATTTTTGGAGATACAAGTATTGGTTTTCCTAATTTTTA TATAATGAAATCTTATTTTAACAATTATTAGCTAAAATGCGTATCAAAGA TTAATGCTGGAAAGCGCTATATCGTTTACTTGACTCACAAGCAAAAAAAT GAGATTCATGAAAAAATAAAGCATTTTCAAAAACTATGAAAAAGATGAAA AAAATTTGAACCAAGCCAACCTTTAAAAGTAATTTGAAGAACAACTTCCC AAGAAAAGATCTACAGGAAAGAAGACACCCACCTAGATGCGTCCATCACC GGATAGGCTATTTTTTTCAAGCCTGAAATTGCAGGAATTTAGGGAGTGAG TAAGGCTAGAATTTAATTTGGGGGTTGAAGGGAAAAATTATTTTTTGCAG GCACTTGGTGGTGACAGGGTTATTTTTTGTATGTAGTGTTTTGAGAATGG TTGGCGTTATTTAAGAAAATCACGAGAGAAACTTAAGTTTAGCAAAAAAC TTATTTTACAGAGCAGAAATTTTTTTGTCTTGCCAAAATCAGTGCCCTTA TTAAGGTAATCAGCCCATTCTTGCAACTGTTTATTTTGATGAGAACTAAT CCAAAATTACTGGCAAAAATGCATTCTCTTTAGTTAACCGACCATAGTTT TTTGCCTTCCTAGAGTCTTGGTCTTTCTTTGTTTAAAGTTTAGCCGTTTT ATGACAGGTTAAAGAGAGGTGCTACTGGTCAATATCTCTTAAATTATCTG GCTCTGAAATTATGTATCAAGGTCACAAAATTACTAATTATTAAATTAAA TTATTAAAAATATTTTTGACAGCCGTTTTAAGAATTATTCATGCCTTTTT AGCATATCTGGTGATTGTACACTGCTCGGTAATTAGACACTACACATCTG AATTATAAAAAATCATGGCAAAATTGCCTTTTTCCTAAAAAAACAAGTCT CAGACACTCCTGCCTTTCTATAATTTGAACTGTGAATACTAACTTTATGA CGATTTCTTTACTGACTTTGAAAACCTATGAAAACCTAAATGGTATCACA GCCAACTTTGTTGGAAGGGATGATACAACTTGTTTTTTGTAGAATTTTTC TTCTTTATTCTTATCAGTTCCTTGATAGCCTATCTACTAAGCAGGGTGCT TGGTTATTACTCTTTATCAGATTAATTATTCATCATTAGGAAAGATTAAG CATTTGTAAACAATCCTTCTTCAAGTAATTTCACCTCATAGCAACAGCAT CCAAGGATTCATGTTTTCACAATCTGAAATAGTTTGAAATTATCATGATG ATTCATATTTTTATTCTTCAAAGAAAACAAAGTAAAATGGATGATTTTGA TGATGGAGTGATTGAAGTTCAAGTCATTCCTCAAGATGATAATTGGGGAG AAACTGCAACAACCATCACAGGTAACATATCCATTTAAACTGGCAAGACT CTTACTTTCTGAATAACTTTTACCTTTGTCAATGAAGCTTTTATGAATTA TTATGTTTCCATGAATAAACAACTTCTTTTTTCTTCTTCTTTTTCAGAAA CTGCAACATCTGTTTACTCGGACTTGGACGATACTGATCCTTTTGGGGAA GAAATAGAAAAACATAGATTTCAATGTCCAAATTCTAAACAAGCACTCAA TATTTTGTTATCTGTAATTCTTGCTTTAATGGCTGTTGTGAGTCCAATTG CTTTTGTTATCATTCCCAATGTGTCTTCTTCATTGAAAGTTACTGGAGAA GAGTGTGGGTCAGTTTGCGAAGGATTGTATATAACAATTGCTATCAAAGA GATTGTTTTAATATTTGGCTTATGGGCTTTATATATCCGACCAAACAAAG TTGATTTACCACGTTTAAATGTATTCAAAGTTGGAATGATGGTTTTAGTT TACGTTTCCATAATATGCTTTTGGTTGTTTTACTCAATTCGGATGATTGG AAATGGGACAAATCAATACTTGACTGTTTCATTTGCCAGTTCATTTTTGG ATGCTATGTTGTTCCTTCACTACATGGCCTTAGTTTTGATGTGGATTCGA CCAATGGAGAAAGTATATACTGTATCTATTATCAGAAATGTTGATGGAAT GAGGAGGTATTATAATATTGGTCAATCCTCTATACAAAAAGCTGCTGTGT TTTGTTTAGAGCGCTATTATATTGATTTCACAGAGTACAACCCATACATG CCAAGACCTCAATCTCGTACAAAAATAAACAAACTGGCTGGTTTGAAAAT TTATGACTTGGATGGAAAGGGTGATGGTACCTTAACACAACAAGCCTCTA AAGCTTTTATTGCAGCCGCTGCAGCAGGACGTCGTAAAGAAGGGAGGAAT GACCGCTTTTACGAGGAGCAGGAATTAGACAGAAGGATCAGAAAACGTAA AGCCCGTCTTGTGGCTGCTGCTGAGGAAGCATTTGGTCATGTGGCCAGAC TCAATGCTTTTGATTCTTCCAAGAAAGCTGATGGTTCAATGGATCCCGAG GAAGCAGCTCAAGCTGTTTTCCCAACTCTTGCGCGACCCTTGCAAAAATA TTTGAGAACCACTCGACAGCAGCTTTATTACCCATTGGAATCTATTTTGA AGCATTTAGCGCATTGTATTTCATATGAATTATCTTCAAAAGCTTTTATT GAACGCTATACATGTGATCAACCATGCATTTCTTATGTTGGTTATGATGG CCGACAAGAATGGACATTGGTGAGTGATAGTTCACCTACTCGGCAGCTCA ATGAAGGAACTGTATTTCAACTCAAGCATGAAGACATTTCGCTTGTTATT GCAGTTTCAAAGCTGCCTGTATTTGCTATGTCAGAGTTGCCTTTCAATGG CGATTCAAATAGATTCGTGTTCAGGCTAAATTCTGAAACATCAGTATAAT GTGGCAGCGCTTGGAAGTAGATTTGTCTTATGTCACAGGAGAGTCATGGT GGAAGTTATATGCTTGCCTTTCACAGTAGTGATTGAATATGTTTTCAAGT GCTGTGTTTCAATGGCTTGAAGTGTTTGTCAACAAACATGAAAAAGAACC GAAGACAAACACTCTAAACATAGAAAAACCGCATCGATGGTTTTCGGTTT TCTTAACAAATTCCTATTTAATAGGTATACCAGTGAAATATTTTTATGAG TGTACGAGTGTACGACCTTGCAAAGGAAAAGAACTTGCAAAGATCGTTTT TTAGATTTCATACAGAGAGAAAAAATGAACAATTTATTTTATCACTAACC GACACTCATTCATTTTATTTCAAACCGACTCAAAGAGTCCCAAATGTTAT GACTATAACGTTCCCAATGTTTTTTTGTAATGAAGATGTGAACTAATTTT TTATTTAGGTTTTTTCGTGCTTTTTTATATTTATTTTAGGCTTAAATTAA TTTAATACTATCTTCTTTTGGTATGTCTTAATTGACTTTCCCTAAACAGT GAGAGTTTTTTCTACTCGTCTGCTTTCGTGATGTGTTCCTATTTGAAGGG GTTTCAACACGCTCAACAAGTTATCTGAGAAAGAGGGAGAANTTTTCTAC TTGTCTGCTTTCGTGATGTGTTCCTATTTGAATGGGTTTCAAAACGCTCA ACAAGTTATCTCAGAAAGAGGGAGAGAGAGAAAGATTATTAAAATAAAAG CCCTTTGTGATTACACTAATAACAAGTTGGAGTTGTTTCACCCTTTTATC TTTTGTTTTATAGATTTTCATTTCTTTTTATATTAAAACAGATCTCTCCA TGAATGACTTGTTAGAAATTCTATACTGTCTTTTATTGTTTTGATAATTT TAGAATTAACTTTTTTGTCATCATCGTCGTTTATTATGACTCGAAAGACA ACGGCGTCCAATATCCAAAACCTGAATATAAATAAAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00023720TCONS_00023720Clytia hemisphaericatranscript
TCONS_00023719TCONS_00023719Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
Strabismus/van GoghTCONS_00023719-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000460supercontigsc0000460:63984..69321 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
VANGL2vang-like protein 2 Homo Sapiens
VANGL1vang-like protein 1 isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.63 4.6 5.48 6.33 28.64 19.36 15.86 17.33 8.07 9.13 5.87 6.85 4.43 3.85 2.78 3.69 5.3 5.99 4.59 5.15 5.63 5.31 13.34 13.56 4.94 6.11 14.64 12.41 12.56 13.24