XLOC_012271 (gene) - C. hemisphaerica

Overview
NameXLOC_012271
Unique NameXLOC_012271
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000396:50031..57449+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012271 ID=XLOC_012271|Name=XLOC_012271|organism=Clytia hemisphaerica|type=gene|length=7419bp|location=Sequence derived from alignment at sc0000396:50031..57449+ (Clytia hemisphaerica)
GTGTAAACAAAATCGTCATTCAAAATGAAAAGGACATCGTCATACCTTTA TTTACATCAATTTTCATCTCCTTTACATCAGGTCGTCATATGGTCGCTAA CTTTATCCAATCCTACAAAGTGATGTATAAAGATGAAAATAATGCATGGA GGTATTACACACTCAGCGGTGCAAGTGCACCTAAGGTattagatttattt atttatttttgcaaagAATCATTTCACGCCACCTGTCTCACAACCTCGGT GTAAAATTTTCTTACAGTGTGGATAAAAGTTTCTATGGAAATGCCCATGG GGATAGAGATTCTATTGTTCCAGCCTCAAAATATctagtgggatggtttt gaagtacaCCTTTGCCATTAAATTTCATAtagggataaaatcaaagtcaa tttgcCAGTAGGACTGAAATTGTAGGGTGCTCTCTCACCGGGgatgaaat tttggccaaatattCCACTGGACAGTGGTACCAGCGGTTctctgacacag gggtgttttatcgCTTATAATAAAGAAGAGTTGAAAAAACATTGGACATA ATAGTGATAACGATAATGTtcactttttcagattttcaaaggaaataCAG CGCCCAACCAAAAGACGCTTTCCAAACTGGAATACAAAATTCAAGCTCGA TTCATCAAACTATTTCCAGAACGTTTCTACTCAAACGCCTGTCTTCGTTT TGAATTGTATGGTTGCGTGAATGAGACAGAGCCGACGACTACGACAGCCC CAACAACGACAACCATGCCGACAACGACAACCCAACCGACAACTACACCG ACAATTTGTCCCGAGTTTCGTTGTGGAAATGGATCATGTATTCCAAATCT TTGGGTTTGTGATGGCAAGCAACAATGTAGTGATGGAGGGGATGAGAATG TTTGTAATGGGAACTGCAGGTGAGTTTATAAGCAAATGCTTAAGGCCGGt gcaaatgaatccaacattcaATCCAATATTTCCAATTCATTGTTGGACGA AATGTTGGACGAAAAGTCACGTgtaaaaattcgaaaagttgcatgaaaag tcatttgcgcaaaaacgtcaaacattttcatccaacatgattacgcaaat gcatccaacattgaaaccaacaTAAAAGTGNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATG ATTTCCAACAACtttcttaaaaagttgcaattttacgACTTGCGCAAACG aacccaacatttgatccaacaataatgttggatcaaatgttggattCGTT TGCGCCGGCCTTTATGGAAATCAAACTCGAAACAACAGATcttttattaa aaacaaaattgttttatttgaaaaatcccaGCACAATgacttttaaaagt ttgaatATTGGTATTCCAAAGTTATTAAAAGTCTTTGTTCTTCACCGGTA TACCaaactttaaaaaacatttccagAGGAGCTCACAACNTTCTTCACCG TATAccaaactttaaaaaacaattCCAGAGGAACTAACACTTTTCTATTT TCGATTGCAGTGCGGATCAATTCCATTGTCGTTCCGGTTATTGTTTACCG AAGCAGTTCCGCTGTGACCAAGACAACGATTGTTTCCATGGTGACGATGA AATGCATTGCGATAACACCACGTGTAACATTTTCCAATTCAGATGCAATG ATGGATCCTGCATTCATTTATCGTAAGTATTTAAGATGAGAAATATGTTT TGGAACAATGGACATAGCCAAAAGCCAAGTAAAACTGATGCTTTATATTT CGCAGCATTCCAGGCAAGACGTCGAGTTTAgcgtctttgtttttttttgt ttttgcaaggctaatttttataaattttgggctttaaaacaaaagatctc ATTGGATTTAATGATTTAATTGAATCAAATCCATTCCACGAAAGTCGAAT GAGCACCCGCCTTGAAGTCATTTTCCTCTGTTAAGACAAAATTAATATAT TCCCATTATTACAATTTATGATATGTATCACTGCAATGTCTTAGACATCC CACCATAGATCCAACAGCTGACTGGTTGTATGTGACGTAAGATCAgacaa tacgtcacttgcaaaccaatcagctgttgggtctgtgatgtaatgttagg agagaatggtgcatatcatgaataccctTGTGCCCAATTGTTCTTGAGCA CTTTTCTGTTAAGAAATATGCTTAAATGGTTAGTTTGTATGACAGAGTtg agttcaaaatttttgaaccatatgtatttttcagccaaaaatgtgATGGA CGCGTCGACTGTTCGACCGGAGAAGACGAGAAAAGCTGTCCAACAACTAC AACCAGTCCTGCAACAACCACAACACCACGTACGACCACTACAACGACCG CGCGGCCTGTGTGCAATGGATTCAAATGTCGTTatggtggaaaatgtttg agcAATGACTTGATATGTGATGGTACACGTGATTGTGGAGGCTGGGGTGA AGATGAAGAATGCTGCAATACGAAAACACAATACAGGTATAAAATGCGTT CTACCATCTAtcagtttttaaagaaaatacgaTAACTGAAGCTAGGCTAC ATTTATGACATTTTACAAGCAGCTGCAATGCAATTTAGATAGCGTTACAT TACGTTTTCAAGTgcctaaatttcaaaaattgcattccaGCCGCCAAGTG GAAAACATCAGTGTAGCCTTAACTTGGCCAAGTGTTTTAGTATACTTTTT TTCTCAGGGCATTTCAAACAACCTTAAACTTACATAGTTAGACAGGGTTG CATTTTGCTTTTCaagcaaaatatatttttttctgtcTTAAATCTTTAAT TACTCTAAGTTTATTAAATTTATGAGTAGAAATGACTAACATATAGTCCC TTCAAGAATGTTTTAACGTTGAAAAAATATTACCAATTGGCTCAAATTTG GCACTAGTCGATTTAACAATATTTGGACACACCTGAATCTTTTTTACCTA TGTAATAATCCTATCAGACTTATGGACTGTTATTCAGGTATACGTTGGTA TCTGATCCAAGATTGTTAAGGCGATTACAATGAATAATTTGTACAtcatt taacttttttcttGCCATTTAAGATGTTCACACAGACCTGGTGCACACGT GGGGAAATGTATCCAAGCTTCCAGAAGATGTGATGGTTACAATGATTGTG GTGATTCGTCGGATGAATTCAATTGCACACATACTACCACTGTAAGATAT CTAATGTTTTCGGGTAATATTGTTGTCTCATATTATGCTGGTCTACTTCT ACAGTTTTAGCTATATGGCAATTCCTAAAGGGTGACACTCTTTGACTGTG CTAAATCACAGCCGAAAGGCAATACCAAAAGAGTAAATCGCTTTATAAAG AAGGTAAAAAATATGAGATTTGTCTAATTTTGTCTTATGGTTTGACTTTC TTTTCATTCTTCAGGGTCCAGCGACAACAACTCGTTACTCGACTAACATT TTTACTGAACCAACTGCAACAACTAAGCACGGTGGACAAGGTAAATCAAT TTTTAACcgtattttaaaaacattacaGAGAGACCTGCGAGCTAAAAGCA AAAAGATAAGATACTAAAAATACATGCTAGTAATTTTTTTGACGCTCTCA AAAGTGGGTGAAGCGAAAATCTTTGTTTAGTGACTATTAGGAAAGTCAAA TTATTGCTGGTTCAATAAAAATAGTATGTGACCTGCTTAGATAACGAATT TTCTTACTTTCACAGGCGGTGGCACCACAACAAGAGGTTGCCCACGTAAC AGCACGTGTCTTTGTGAGAACACTTGTGACAGCCTAGCTGAGAAACCCGA TGGTTGTCTCTCGTTCTACTGTATCGATGATTGTTCTTGTCCCACTGGAT TCACTTATGATAACGTCACCAAACGTTGTGAACGAGATCTTGATTGTCCT TGTGTTCGGAATGGTACTATTTACAAGGTACAATTTTCTTAGGAATTCGT TCCCCTGTCCAACCTGTCCCCTGCCCGATAGACTAATTTTGAATTGTACG AATGATTTTAGGGAGCCCAAACCGATTTCTCCTCTTGGAAGATCTATGAT TAAATTGATTTAACATGTCTTTGTAATAAGAAAAGACaacaagttttatt ttattttcagcaaaagattttttcaaacaattagCACTGAAGATGGTGTT ACCGAAAAGGTTTtgctgaaaataaaatctttttttttttctccttacTT TATGGAATGGCTGATTTAAACTTAACTATGTCTTAGTAAgtttccttttt ctttatttttcaaagactgGATCAGTATTAGATGGTGGTAATTGCACTAA ATGTATATGTAcacaaaatggtttcaaatgtgCTAAGATTTGCCCTATCA AAAGTTGCGGATTGGTAAGCCTTTGTACCCTATTAATTATACGTGTTTCT GCTACTAAACCTTTTATTACCTTTTAAGTCGTAAATTGATGACTAAGTTT GTTGAGTACACATAGGTTTTCACCAGCTTGTTAAGCCGAACAAAACATCA GTTGCATATTCACACAAGGGCTGACTGAATCAAGAACTTTATTGTAATGA AACGAAATCTCGAACTCAGTATTAAACATTTGTataatttctttcctttc accAATTCTAGGGTGAAGAGATGGTTTATCCAAAAGATGATTGTTGTTat tgtgagaaaaaaataagtAAGCACTTACCATTTTTTATCATCCACTGTTG CTTTCAGacattctttttgaaaaagggAGTAATCTTTGACTAATTCTGGC TTGGGTGATGACTGTTTATATATTAAGCACAATGCTCTAAATTACTTTTG AATAGCTACTGTCTCGTTTagttaaaaatttattaccGTTGATAAAAACC CGAACCCAGTCCCTTTGTTCACGAAACTACGtctatcagtaaaatcaaaa attgatgcAAGTAACTATAGTTACGAAAATTACCGTCGCTAAATATTTTC ATCTCTTTTCTATTTCAGGTTGTCGAAAGGATCAGTACTTAACAGATTGT AGTTGTGAGCGCAACTGTACTTCCAACCTGACCACGTGCGACCCGGACAC GTGTTCCATTGGTTGCGCATGCCCAGATGGGACGTTTGATAATGGAACGA ACTGCgttcaaaaaaagaaatgttactGTGTAGATGAAGATGGCGTCAAA CGAAaggtaaaaaattcaaattttcagcaTGATGATTTTCAGAAAGAGGA AACCCATTTCTCTCCTGTTGTTTTCTTTTTGCATGGTCTTTTATGTTTGC ATTTTTTGGAATACGTCAAAAACAAGCtttttatattgaatattaGAGAT TCGATCACGCTATTTTGTATTCTGCAAAATAGTTTAGGCAGCTTCTTATA AGGGCACCTGTCATAATGTACAAAAAGCCTNTAGAGATTCGATCACGCTA TTTTGTATTCTGCAAAATACTTTAGGCAACTTCTTATAAGGGCACCTGTC ATAATGTATAAAAAGCCTTTTTTTCAATTACAGCCAAACTCTCGATGGGG ATCAGGTGATTGCGATTCGTGTAAATGTACCAATGGAAAGATCAAATGTG GAAAAGTTTGCAATCACATTACATGTCCACCAAACTTCGAACTGTTTACA CCGCCAGATGGTTGTTGTATGTGTATGCCAAAAAGTAAGTTTTTCATTGA GCGGACGTGCTCTGAGTTCtctttaaaaaatacaagattTTTGGTGAATA TTTGGTTGCATTCAGGCAAAATTATGTATAATTTGTGGAAATATTTGGAA AGGTCGAAACATACTTTGGTTCTCCCGTAGTGTCTCTTATGATAGGCTAT AAATCTTCGAATCCTATCAGTAACATATGAAAGTGGTTTTCTGCTACGTT TTTCCAAAAGCACATCCCATTAAACCATTATATTCTCCGACCATTAGAAA CAACTGCACCACCATCCGTTTCAACGACAACCACAACAACTACGAAATCC ACAACACAATCAACACGGCCAACAACACAAAGTACCGCCCAATCAACAAG GCCAAACACATATTCAACAAAACATTCAACATTATTCACAACCTCGACTA CACTGCAGCAAACAACTTCATCACCGACCACAACACCCTCACAACCCAAC AACTGCACCAAGACTGAGGAGATTGAAACTTACACAGATAAACACCAATG CTCAGGGCAGGTCACTAAAACCTACTGCCAAGGTGGTTGTTTATCCACCA TCATCAGTGATTTCATACTGGGTATAGGAATCCAGAAATGCACGTGCTGC AAACCCATTGGAATTTTCAATACTACGATAAGCCTTCAATGCCAAAATGG GAATTCGAAGATCTTCACTTACCAAAGGTTTAGATCTTGTTCTTGTCAAC CGTGTGATAATTCACCGTTTGACGACGTCACACTGTTCAACCCATAACCA GAATGCGATTGAAATGAGTGAATTTAAGAGTAGATATAGGGTTCAGAGTA AATGAAGAAAACCCTTTGGCTGCCAACAATTCAGTTGAGGTTATCAAAGT TGGGAAAATCTGATATCCACTTTTCTCCACAAAAGATGAAAAGTCCATCA GAGACATATCAACCTTTTTTTGAGTATTAGTGCAGCCTGTAAGATTGCAA CtagagacttcattttttaCCTTTGAGACAGCTTTCCTACATACATGAAA CTTTGGGTGGCTTAAAAGTCGTTGACCTTAACGTCTCAAAGGATACCTTG CATAACGAAggaaaatctcttttatttagTAACTTAATATTTTAAACAGT ATTTTTTCACAAGTTCTGTTAGCACTGTACCTTTTTTTTGACTCAATTCT TTTGTATAGTAGTTCCAGTTTTGTGAAGGTAATCAAAGGAGGGAGATCAA TAGCGCCTACAAACACATTCCTGTAGACATGACTTTGAAAAGTTATGATA CTCTGAAAACTGCAATTGACTTACTATTtactattaaaaaaaactttatt gagTACCTGGACCAGGAAAATTAGCTTGACTCCTTCACCGCGTAAGATTA TATAGCATGATAGCTGAATATTTTTGGTTCGTAGTATTTATTCTTTTtgg attgtaaatatttttatcagcTTGATTCCTTTTTGATTGTTTATTTGGTT GTTCTGCGCCGTATTAATGTTTTGTTAAACGAactcaaattaaattttat acatgattttttaagatatttttgtATCCCctagaattttattttaaaaa ggaaagaaaattgGACGAATAACAAGCTAGATATTATTTCGCCTGGAAGA ATATGCTTGAGGATTACCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00021872TCONS_00021872Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00021872-proteinTCONS_00021872-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000396supercontigsc0000396:50031..57449 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29 1.49 0.52 0.34 1.16 0.92 1.57 2.24 0.84 4.83 2.62 0.89 12.11 14.73 8.82 21.15 9.64 9.25 0.43 1.54 6.57 6.51 4.53 5.38 10.31 6.8 1.05 0.45 1.8 1.42