XLOC_009268 (gene) - C. hemisphaerica

Overview
NameXLOC_009268
Unique NameXLOC_009268
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000243:246356..257749+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009268 ID=XLOC_009268|Name=XLOC_009268|organism=Clytia hemisphaerica|type=gene|length=11394bp|location=Sequence derived from alignment at sc0000243:246356..257749+ (Clytia hemisphaerica)
cagaaaattgataaataaaataaattacaaCAAATACAAAATGGTTGCCT
GGTGGAATGGCGTTGTTTTGTTTATGTGGCTGGCATACAGGATAACATGT
TATGAAGGTTTTGATCCAACTGGTGGAGTTTCAgatgaaaagaaattaaa
agtaaGTTCATTTTTCAAGTACTgcgtaggtcctataaattgggccattc
cattttatatccatacagggggtagACGAACATTTCCTGGGGGTAACCTG
AGAAGagtttccagggggtaaaagacaggttttagaaagaaaaaaagaaa
tttttccgagggtttctttgcaaattttgccatatTCCAGGTGATATCTC
ACATTTCTAAGAATtatattttgacttaaaaaagttcatctaccccctgg
atttttaatggaacagcccattatCCCGTTCGTTCGTCAATCTGTTTCCA
GCTTTTGTCGAGATTAGCTCattagtttttggacctaccccggaggtctt
ataaattaaccgatattcgtctgttcgtctgttaccagcttttctcgaga
ttagcttattagtttttggacctaccctggAGGTcttataaattaaccga
tgttcgtctgttcgtctgttaccagcttttctcgagattagctcattagt
ttttggacctaccccggaggtcttataaattaaccgatattcgtctgttc
gtctgttaccagcttttgtCGAGAttagctcattagttttttctgatttt
ttgcatagcccgattttcgaaataaagtttttttgggcaaatttaggccC
AAAAGAAATTGCctgattagttttttctaaattttggcagaaagatgagG
GTATGGCTCTataaaaagtggctgaagccattttttccggaaaatatttt
ttgaccgtagaataaaaatcggattttcgaATTCCcttcgttagtttttt
ctgattttttacataaaTACAGAGGGTATAGTTCTCAAAAAAGTAATAAT
CCggtaaaatcggattttttatTTGGGgtaatttccttttttcattttta
gggaaaattaccatttctcgcgattggcttgattttttttctgatttttt
aatttGCACTTTCTTACCATTGTTGCCATTTTTTCTTGTCCAGAATATGA
CAAATTTAGGCCGAAAGCAGCCCAAAAATTAGTTTGCCTGTGGGTACTAA
CTGCTGTAAGGGGGGTGTACTATAAATTTGAACCAAATCAAATAGTACTT
TCGAGTTACTAACTGCTATGCGGGATGGTGCATGCTATAAATTTCAAGAC
AATCAAATGATATCATAGAGtactactttaatgtcagaaatttttgacat
ttttgcgAGAATTAAATGGTcgcgaaaaaaatgaaagtgcttcaaatttg
gatttttttttcaagctcacttataaaaaatggtcaaatctccctttcta
aagtttttatagCAAGTGACTTTaacaatcatcaaaacaaatactTTCAT
TctctactttataagaaaaccAGGTAAAGATTTTTACTCTATTCCCgtga
ttcgcaaaattaaattcccgcgaaatttttgaaatacaaaaatttTTAGG
AGCCTGATTAGCATAATTTTTTGGACGCGAAAATTACCGAGGTTAGTGTC
AACTAGGGTACTAAAAGGTTCCAAATAATGGCTACCTTTAGTGCCGGCCA
CTCAGGACCACTAAACAGGGCAGAatatagactagtaaaccacgtcgttg
tatttcgctgcagattaaacttttaatgggatctattttttttaatgttt
tctgaATACAACGACTAGTTCCAAATGGCGCTATTTACTAAATAAACGGT
GGAGTGCTTTTTATACNGgggggggggtgcaaactatgaaattggcgccc
ctggtattttttgtccttacttgcgccctccattattaagtgaaaatatt
aaactgtaagagNGGTCACTAAAAACAGCGCACTCACTTTCACAGAttag
aataaaaaagtaaacaaaactcggtactttttatgctttattattatttt
ttttttttttcacatcctgattattttttgattttaatattataaaagaa
ggtgagtaCAATGGAATATCAGTCAATTTAGGAGCTTTTTTTTNATTtgc
tttttgtaatttgaataTAAGTTGTTTTGACATTAGCAGatgctaaggag
gcgcaaccaatGTTTGCGCCGATGggcgaaaatttcaatatttttcacca
ccattttagctaaaagacactttgttttgacaaatttcttttaagaagta
ctttttcaaaccactNtgaaaaaattgaaagttctttCTCCCATAATTAT
CACTAACAAATGCACtaagggagcggtcataaagtatctactagagaggg
gtggaggatattttgaaaaatccaaaaaaaaattcgcacccccccctaaa
ccctcgaaaaaaatttcgaaccccccctcataaggcccaatattttttcg
cacCCCCNNNNNNNNNNGAGagccactaatctacttccctcacctagctc
aatgttacaaaccaaacgggcaaggcgatgatgcccaaataatgcCAATA
TGAAATGTACATATATCGAATAAGATAAATTATTAGTTGTCGGCCGTAag
gccgaaaaatttttgaaatcttcaaacgtaaaactatgaaattagacttc
ctacattttctcttgagtttcccaaaaaaaattggaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
tttagggggggggggggtgcgaaaaaatattgggccttatgagggggggt
tcgaaattttttttgagggcTTAGGGGgggtgcgaaattttttttggatt
tttcaaaatatcctccacccccctctagtagatactttatgaccgctcAC
TAACAAGATACCAACAACAAGACAAGGAGTTATTCACAAAAAGTATGATA
TTTTTGTCTGAATGAAAAGAATGTGAATTGGACTGTACCTACCAGCTATA
GGTAccccaaaacaaaaatattcatataaggggaaaaatctttttccaaa
gaaaaagataaacattttttcagaaaaacgacatcaaaaatataaaagat
caGGCCACTGCAGGCATAagaattcctttttttttttttgtagaagccaa
aaagaaaaatgttttcaaaaaagcaacagcttttattttacaaaacataa
aattatatgTATTTGTTCATATTGACCTTCAATTTTGCTATAAAAATGAT
ATATAGAGTATCTACATAAAATTACTTCTAAGtccaagtagatttttttt
ttaattggcaaaaatccaatcaaaattttcCTAAACTTTCAAACtgtaag
tttgaaaaactttgacgtATAAATTTCAGTCTGAACTTGTTCAACAACAC
CAGGGGACAACACAAAATGACAAGGTAGAAGTCTGctggggggcactgac
cttggtGACTGACGGGGACGTGCtacgctggagtttgaaaagtggaccct
gtgagATGTGAATGTtaggtaaatttgggacccatTTCAGAACGGAAAAT
GATTTGAtcgaaaaactcaaaatattttcccactTTAACCCTGTAAATTG
ACAAAAGTGACTTAAAGtagacaaaaaattcaaatatttttaaatttcca
cCCTAAAAATTGtccacatcttgaaaattagtaccGTGAGAtttggtaac
ttgcatcagtggaggctaacatgcatagccctcaaatgaaacaCCTGACT
GGTCAtcaaaatacaactacgcagctctgctcgcagctctactctaccat
ttttgttttgatttaactttgtattttgatgacCAGTCAGGtgtttcatt
tgagggctatgcatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAATGTGAGCATATTAACATATTGAACATTCCCTGCAAAAAGTATC
CTGCATATAGTCATGGAATCTCAGCTGTGTCATAATGTCATAAATATTGC
ACTTGTACTAGACATTTACCAGCGTAtcaagccaacaaaatttcaaagat
gcCAGTGTTAAAACATGTCATGAATGTTTATAACTATACataatcaaaaa
atctttcaatcatgaaaaagtgaaagtataATCCATATatgagtttgttt
gtttttgtgaataAATCAACGTCCCAACCAAGCCAGAAACAATGTATGAA
TAAAGTATCTCAGATAGATAATGCCAAGACAGTTTAACTCTgtgtttata
aacatttaaacacattaaaaaaattctcttctCAGTTTAGCAAAAAAAGT
TGGAGAAGTCTTCGCCacgtttttctgtttttgtgtttataatttttttc
tcatccaTAACTTCGAGAAACTCAAATATTGCGATgagaatagaagaaaa
aataagccgTGTCCATTCATTTTATCTTCCCTCTTTTTCGAGGGAACGTT
GCCTGAgattatagtagggggaattttgttcgattttttggaatcgctcg
aatgttttgttagaagcacttgttatacattttNCTACTATTAGATTGAA
GCAAAATCCCGTATTGCACCACTTGGAACTAGTCTgtctttccaatccac
tctcccgcgacaatttctattttttataagaactctttattataagcact
attcccgcgttcctgtgtccaaggaaagacagacgcttgctagtctaggC
AGAATAGGGCGTGGTGCCAACCTGCCTATAGTCAAATGCACTTAGTACTA
CAAAATTCGGTAATCCAAACCTTCTAGATGTTAAAAATTTTCCTGACCTT
CAGAGCTTCTGCTTGACGGAAGAAAATTTCTCCATCGAGTTCCTTCTGGT
GTTGTGATTCAGTGGAGCTTTTAGTGTTTTTACTGTTTGTAGTGTTTCAT
TGTGTCCCCTGATTAAAGATAAAAAGATTAATTACAAGCAAGTCAACCTC
GCTAATGAAGGATCTGGATGACATGACGAAGATCAATTCTCTCTTTTAGC
TAGAAtactcaacatagggggtacagactacaTCTGGAATATCCCAATTC
TATCCTTAGCTAGAAGTAACACCTCCTCGACAAAGGGGGTACAGATAGAC
TATATCTGGAATAGCCCAAATCCTCTCTTTTAGCAAGAACACACGCCACC
CCGTACAGACTATTTCTAGAATAGCCCAATTCTCTCTTTTCAGCTAGAAG
ACAAATACAAAGTGGAAGATTGTAAATACCGCACACAAGAACATGACATA
ATACACTGGCATTACAAAGGAATGCTACTCAACGGTAAAAACTTTGGTGA
AGGAAATTACCATGCACAACTGGGCCACCGTACTATCATATATGGTGTAG
ACCAAGGAATGAGGGGTTTGTGTGTTGGTGAAAAACGTAGAATGACAATG
CACCCTGATTGGGGATATGGAACAAGTGGGACTGGTAAGTAACGTTTCAA
TTAGTGATTGATATTGATTGCCTTTTTCCAGCGTTGCATGCCCTCAATAG
ATCCAAATACTTTTAAATATGTTGTTACTTTTGTCTCTTAAAGTGCTAGT
ATTTCTAATACTAAACGACCAATTTTAGGCCAATCAGGTGTTAGTCTGGT
ATGCTAGACGACTATGTAATTgagaaaataagcaaaaagaTGGTGGAAGG
AAAAAACTGATGATATACCTTAAatattatcgtattatcatataacaccc
atgTTACTGTATCACATGggttataaacgactccagagTAAACTGTAACA
AAATTCCAAATTTTCCTTAGATGTTTCGATATGTATACAATATATTTTCA
ATAAACCTTATTTTTCAGACAACATCCCACCAAATTCAGTACTTGTGTTT
GATGTACACCTTCTGAAAGTTGAAAGACCTGGTGATGGTGTCGAGACTCT
AGATGAAAAGTTTGAACAAAATGGTGGCGTGACTGCTGAAAATAAACTTG
TGGTATGTTTCAATTAAATCTTGTCATTATACTGTTTTCAAGTCGAGTGT
ATTTGGGCTCGAAAGCTGAGAAAAACTTTGCGAAAATGTTAATCCTGAAA
TTTCAACCCTCCTGGGAAAGTAACGCAATGATTTTATCCCCGTTGTAAAt
tgacattttcataaattacgtcacgcgTAACtcttgcctcgttttcaaaa
tattgctatggtaattgattccgAGAGGAGTTCATAAGCAGTTTACTCTA
TCTATTAAAGTAACACTTGAACACTCAAGGGatcttggtaatggtttcaa
aacgagacagttgttgcactcaaaataatttatgaaaaggcctattggaa
agaaaaattccACTTTAGAACCACGCCTATTGGCTTTTGTGAGCTATGAG
TATTAGATATTCTATCCCTGTAGAGATTCTcatagtaatctcatggttga
ttgacaatcgattgacgtttttgctgacgtttttgtaattttcctcctag
cttttgtaatttctctCCTAGATTTTTAATCTCCTCGCGTTTCTATAAct
ttgagacctctttttaaagtttcagattgatttccagtgttaaattgacc
TCTTCCAGAAttattagaatttcaatccaaaccatgagattaaccatcgt
tgcactcgggaattttcaaaaaatttcaaaattgaccttgGGAAATTTAT
GCCGAATTTCCCTCATAAACATGAGATTACTAGTTCAAATTTTCATCGCT
ACTAAAGGAAAGTCGTTTCAACGGGGCACTGAGACTGGGGTGTGCAAAAG
TTACTTGCCTCAAAGTGAAATTATTGTGAatatcaaacattttctttgaa
tgGGACAAATtcaaattgatgacgtcatcaaataatgaaaaatcttgaca
ttctgaaaatttttatttgcatCTTTGATcaatatttgaaattattttca
tggTTCCATCTAAAGTTATCAGCATTTTAATTGATGTCATCGAATTATCG
ATAATCCATGAGATTCGAGGtgttttgcgaattacgcataatatcatatt
ttttttagCTCAAAGACTTGTACAAGAAAGATCCTGAACTCTGTAAAATG
TCATCTGGTCAGGACGATTTGATTTATTGGAATTACAAAGGAAAACTTTT
AGACGGCCATGTTTTCGATCAAGGAAAATTTCACGCCAAACTTGGACACG
GTCAGGTTATCACAGGCGTCGACAAGGCAATGCTTGGTTTGTGTGTCGGA
GAGAAGAGGCGTATGTTTATCCACCCTGATTGGGCGTACGGAGCGCGGGG
CGTTCCTGGAACAATCCCGCCTAATTCTATACTCATCTTTGACGTTGAGT
TGTTGAGTATTGAAAAACCTGACGGGCGTAGAGACGAGATTGATAAACAT
CAGGAGTTTTCGAAAAAAGCTGACCCTGATCATGAAAAATTAAAGGTATG
GCGTAAAGAAATTAATCCGGCTTACCGATAATAAATTTGGGAAAATAGCT
CGGATGAATTGGGGTATTTGAACATCGGGGTATTGCTAAATGACGTTTCA
TTGAAGGTGGTAAAGTTCATTGGAGCAAACTTCGAGGCGGAAGTTCAAGG
TGAAAGAATTGGGTGGGACAATTgaattattgaaaagtaatcAATATTCG
CGTCACAAAGTCAtcaatccaaataaaatataAGAGAATGGGTGAAATTC
AATAAACAATAATTGAAAGTTTGTGAGTAAGATGTGTATATTTTTTAGCA
AGAGCTTCCTTGCCTTGTGCTATTAGAAACTATTTGCTAAACATTTTCAT
ACAGCGTACGTTTACAGCTACTTGGAATTTAAGAATTTCTAATGGAGGGA
CTTTATCTTTTTAAGTATTGTGTCTTTGGGTAGGTTTACCcatgtaaaaa
atgtaaaaaatcacCTACGCCTAGAAAGCCAAAAGAGCTAGATTAGAAAC
TTCAACCTTTCCAAGTCTTACCTAAAGATTTTCGCCGCATTTTTTACCAA
GGTTTGAATCTAgcggtttctttttttgtgtgATAAATCTTTTGTAAACA
AGGGGTATAAATATCACTTTCGATCCGGTGTTTGTGTGAAAAGGTGGTAG
AGCTTATATATACATTAATGAGATAAATTTTTGCAAAGATTACAAGATTT
CGCCGAACTTTATTCGTGGATGGCATTATAGTGgaacaatattttcacga
ttttgtgcctTTTTACGCTAGCTAAACTATGCCTGTTGGTCGAAAaacgc
attattagcgcttcgTTGATTCTTTTTCTCGAAAGAAGTCTcgttgggac
ttaatttcgcggttgacaTTCAAATCCGCGAAACCCGCGAAACTTAATCa
tcgcaaaaatttatcccatttaaTATTGAAACTAGCTTCTGATCCTATCC
TGCATATGAAAttatattgggcttttccagaaaaaaatcgtgcaccccct
gttgaggtgGTCcctttccgttccaagggggtaaggttcgaaatgcagtg
gaattccataagggtagacgaaaatccgtcaaaaataagcggaattccag
aggggtatgatcctaaaattgcctggaattccaagggggtaggtcacaaa
aggttggacctcctcaacagggggtgcacgttttttttctggaaaagccc
attccaCTCCTTCGGGCTTACACATCATTGAAACAGACAAGACATTTTAT
AATGAAACAACATCATTTCATACGAGAAACCTAATGTTTCATAACACACa
atgaacatttttttaattttggcgggaactaattttggcgaatgacagtg
taaatctgttctattttgccttattttgagcaattttgacgaatttcagg
ggtggttatttaggcaaggaaacaaaaaatttaattttggcgggaactta
ttttggcgacaATCATAATTGACTCCACAGAGATGTACTCTTAGGtgtca
aataaacgcccccccccgcttgttaatttaaaaattttccaaccNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNttaattaaaaaatttccaacccccccccctggaccttattagg
atcccactgtttattaattttaagaatattttcagctgtcaaagagaagg
ccccttattttgctctaaatagcctgattttagcatatatttaccttatt
tcgggttttcagaagtacaatttccaaccccccccggcaattaggtcccc
cccccgtttatttggcacctaagagtaggcTGAGGTCCATCCCTCTCATA
CACATTGACTGCGCGTTCACGACGAACTTTTCTTACACTgaaacaaaaat
cttttctcactggaaatttcatatttccagCTGTTTTAATCAACGTTCAC
AACCTTTTGGATTTCGTGAACGTTAAAACACTATTGAAGATAAGTGACGC
CTCCATAGTGTAAATACTGTTGGATANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGAGTCAgacaaattgaccg
acgggtatgtgcggcggttaagggtatgtttttgcaaaatataaaaaatg
caCTTGATAAATACActgtatgggtggaaatttcagcaaatctaggaaaa
attgcaaatttttgctcgaaaatcttgatttttttgctctaaaagggttt
aagatttgaaaaaatgaatttcactgtttttttttctgcactgtgaGGGT
GctattctaaaagccaatttattcgccgcacataccgtcagtttgTAAAC
ctactgcccccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccggatactgacatg
ttaaaagcaatgactTTCATAAACATTGGACTGAGCTGTATCCGCCATTG
TTGATCTAGAgtttatataaagctcagtAGGTGGGAGTAGCTTGGTGACT
TTTTGAGAGATATTAAGAAGTGGCATCGGTACAGCGGCTGccatacacgc
tttttcataagaacattcagaatttttgaagcctatGGATGTTTGTAACT
CGCTCTTAATATTTAGGTCATCCATTCAAACCCAAAAAAACGTGTGCTAC
TGCTACTACTAGTGTCCATATTACTtcctttttaaaatctgaaacttcat
cttttttttcaaaaacagatCGAAGTGACTTATACGGTAGACAGTGACAA
ATGTGACAAACAGACACGTAAAGGGGACACCATTAAATGGCACTACATTG
GAACGTTCACTGACGGTACTGAATTTCATTCTGGAAACTACACAGCTAAA
CTCGGACACAGACAAGTTATAACGGGCGTCGATCGTGGTATGTTGAATAT
GTGTGTGGGCGAGAAAAGGCGTCTGACGATACACCCAGATTGGGCTTACG
GTAAATCAGGGCGTGAAGGTTCAATTCCGCCCAATGCCACCCTGATATTC
GACGTggaactttttgaaattgacAGACCTGAAGATGAGAAGGAAGAACT
GtagatttagaaaattttagGCAAGGCTATTTTATTTTCCCGCTAATCCA
GTGAATTtaggaaaattataaaataccATGCGATTGGTAAACTCTTTTTT
TAGGgttttctagattttaaaacatagaattttgaaatttttatattttt
atacagatattttttatttatatgttcatgaattttttcaaaacaagacT
TTACCAAAAAAgctgaataattatttttaagaCAACCATTGTTCCTGGCC
TCTCTTTTTAAAGGCATTGCAAACCCTTCCAcgctaaacttttt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00016580TCONS_00016580Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00016580-proteinTCONS_00016580-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:246356..257749 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.59	19.33	3.38	2.16	24.28	19.47	43.66	47.49	21.29	30.52	23.3	12.7	11.55	12.42	21.45	33.14	73.99	72.06	5.67	5.31	30.3	31.02	47.59	38.93	21.37	25.07	7.53	6.25	34.67	38.34