XLOC_008500 (gene) - C. hemisphaerica

Overview
NameXLOC_008500
Unique NameXLOC_008500
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000205:78158..82596+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008500 ID=XLOC_008500|Name=XLOC_008500|organism=Clytia hemisphaerica|type=gene|length=4439bp|location=Sequence derived from alignment at sc0000205:78158..82596+ (Clytia hemisphaerica)
AATTAAAAACACAAATAGATTAACTAGAAACAATCCTGTGGTATCATGAC
TGAAGTTAAACGTCGTAATTCCCTTGAGCGTTATCAACCAAAAAAGACTG
ACCCAACAACAACACCTGATGGAAATGATTTCTCGAATCAATTTAACAAT
ATGTCTTTAAATGGTGGTAATGATTCCTATGATGCGTTTGGTGGCGGTGG
TGGTGGAGGAGGGCGGCACTTGAACAGGGGGAATCACCGAGGAGGTAATT
TCGTCACAGTAATTTAAAATAAGAGTACATAAGGTCCAAAGTTTTCATTA
TTTACATGACCAGGCTGTTTTCGccttaaagttctatttcaaagTGAAGT
ATTTTGAAATGTCTTGAATctctttaaaaatgtttattaaaatttaattg
tgaaattttttctgaagattttttacaatttagatCTCGTAAGTTTTTAG
ATTTAACTCAAACTCAGTATTAAATATAGAAGGCCACAAATCTTAGAACC
ACCTCATTATACATCTGTGAAAGTGGAGTAAGGTACAATACtcttttttg
taagcataacgtttataagcataattAGGCTCAAACTAAAAATTAGCATA
CTGTGAAGCATACTTCCatgctgaaatgcaaaaaaacttGTGCAGCTTTT
CTTAAACGCTGGCCTGTTAAGAGTTACTTTTAAAGCTGCTTTAGCTTtct
acaggggggggggggggaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNactaacccatagggtactaacttgatttttcactcaatttctttt
tagtaccacccacccatatttagtaccgggtactacttcatttttgctgt
aaaaaaatggagacaccaccccctaaaattttatattttacagattagac
caaAAGAGAGGGTACTATGACTGAGATGGACAGATAATTCAAAAAAACTA
TCATTGATTAAGTCCGAGGCTTTTGTCCATTGATTTTAATaacacacttc
ttgaccatttcggaagttttgtcttcacaaaatcaaaaaatttctcaaaa
gagtaaaaaaaagtttctcaattaaaaaaaatttcaattcaaaaaaataa
tatttaaaaaaaagtcaaaatattacaaaagactacttttttattgaaaa
aggagcaaaactctgtgaaaaagtacccaaatagtacCCTGTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctatgggttagtaccctgcc
tttGTACCCCCCCTGCTTTCTACGACCCCTTACTAAAGATTgaattaaaa
tcttttgttaTCAGGTAGTGGTCGCAGAGGTGTCAATTCTCATTTATATA
CAAACCAAAACCAGCGAGGAGGAGGACGTGGTAGGGGCCGTGGTCGCGGG
CGGGGCCGAGGAGAAGGTCCACAAAACCAAAACGAGCAACGTGGTCCTTT
CAGGGGCTCACAGCCTCAACAACAGTCGCAAGAAAGTCACCAACGTATTG
ATTTTGATAAACAGAATTCCATAGAAGATGGTGATGATAAATTATCATGG
GGAGCTCAACCAGCAGTTGAACCAGTCACTTTTCAAGCATCAGATTCCAA
TACCTCTAGAAATCAACAATTTAACAGACAAAAACGTAACGAGATGCAGC
AAGTTGACCGTAATTACCAAAATAAACCGTTCAAAAAGAACACAGAAACG
TTCAGACCGTCACATAAACCAACTGAAATGCGTATTCTATGTGCACCgga
aaactggacaaaatataGCCGTGAGATCTTCTCTAGAGATGTAATGATTA
TTAATGGACTTTTCTGTCAACCAGACGATTTAACATTGTATAATAAACTG
TTAAATGAGATTAAGACTTCAGGTGTTGATCAAGAAGATTTATGGAAACT
TTGGCACGGTGATTCTCACGTTATTGCAGATGATAAATTGAAATGGAAAG
AAGCCTGTCCCACCTTTCATATGCTTTTGCATAAGATCAGAGATTACTTT
GAAATGGATATCAAAGGtttgattgaatttttattattttatcaaTATTC
ATCAGACTCAAATCTAAATCAAAATCAACCCtcttgaaatactttctata
caattcgaatctctctataattcgatcaaataagattccccgttcgtgtt
cgaattagcgagagtctactgtaaTAAGATTCTATTTTCTTCTTGCACTG
TCGTTATAGCAACCAGGTTGAATTGGTACCGTGATTCTAAAGAGTGGAAA
CCGTTCCATCACGATGCTGCGGTAATCAAACCAGATAAAGCCAAGACCCA
GAACCTGACAGTGGCCGTTTCTTTCGGCGCGGAACGAGACGCCGCTTTCG
AACATGCCAAGACGAAAACAGTGATTTCTATGCCACAACCGAATGGTACA
ATATATGTTTTCGCCAAAGATGTCAATGTTATGTGGAGACATGGGATTCT
ACAGGTAGGAAGACATCTTGAGATCATGTTTGTTCTACAGGGGTTGACTT
ATATTTATATTAAAGATGTATTTTAGATGTACAACGATCAACTCGGTATA
CATTCAATcACCATCTGGATAAGGCTATCACTCTGTCTCACTAGAGAAAC
ATGGAGATAGACTCTCTTCCTTCACTGCATTTTACGAGTTGACGAAAGTT
CATAACAATTACTATNCTCTTCCTTCACTGTATTTTACGAGTTGACGAAA
GTTCATAACAATTACTATACAAACTTACACCACTTGACCATCTCTGATCA
TCGTTCAAGGGACGTAGAAATCGAGTAACAGGTTTTTTGTAAACCTTGTA
AAACTGCTGCGGTTCAAGAGTTTTAATTACcaagaaattcaaattataga
agTTTATGGTTTAATgtggtacatgttttttttaataagcaaagTGCGTC
TACCCCTATACCAGGCTaacattatgcttagcattttTTGCTATTTAAAC
AATAGCCATTGTTAGGTACagaaaactgagcctgcatatgcttataaacg
ttatgcttgtaaaaaagaaagacatgtagccatttgagattttttcttta
tttcttactAGGTTCCTCCAGAGAAATACCACGACGAAGGGCGCGTATCA
ATTATTGCTTGGGGGTGGTCCAAGCAGACACCCGTGTGAGAACACATATC
CAACATCCTCACATAGTTTACCTTCTTTGTTCGGGTGCACTTTCTCTCTG
GTATTGAATTGGTTTGAATATATCACCATATTGTCCGCTATATGATGGCA
CGTAACGTTTCAGCATTTATCTTATGTTCGCAACGTCCAtaaaacgttaa
atgaacgttgaaacaacgttgtgcgaCAACTGGACGAGGACCTGTGGATG
ATGGAGCTGGATTGAGAGCTTTGGAAGTTTAGAGACAATCTAAACATTCT
ACCGACAACGTTATGATAACGTCCCTGCAACGTCCATACAGCGTTAATTG
ATGAATATTGAAATAACATAGTGTTCCATCCAGCAGCTATGTATGTTTAC
AACGGTTAAAAATTCCACTTTCGTTTACAACCGAATGACGAGTTTTGTAA
CCTAAAAGACAGCTCTAACTTAGAAGATTAGTGTCTCGTATTGTACCGTA
CGAAGAGCTTAATGGTGTACTAGTTACAATAACATTGTTTACCAATATGG
AATTATTATGTATTCGAAAATGGTGTATTCTTAAGCTTGATTTATTTGAT
gtgattttgatttgttttaaaatcttgaaattatgaATTATACTTGCGAT
GTAGAATTCCTCAGATATCTCTCGTTAGATTGGATTGGACCTTAAGTTTT
CCTATTTATGGATTGAAGTGAATTTTAAACCTGCCCTGGATGTAAAATAT
ACCTTCAAGTTTTAACCATCGATAATAATGTTTTAGTGAAAACGATGTCC
AATGAAGACCAATGAACATAATGGTGTTTGATTTTATCcagattttacat
tttaagatattttttttgttttttatcgtCAATTATTGTTATTCTATATA
TTTATCCGAGTTAACTGTTACCTGTACAGCAACTCTTTACAAATCTTTAA
CTTCCATGTCTACTGGAATTCAGGttgcatattttttta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015174TCONS_00015174Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00015174-proteinTCONS_00015174-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:78158..82596 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.55	3.53	1.62	0.76	17.66	13.56	16	16.89	10.74	11.18	8.15	8.43	6.5	5.55	8.12	8.37	15.09	13	6.4	7.09	14.73	14.51	15.95	16.93	5.61	5.56	11.86	8.76	17.51	18.74