XLOC_008409 (gene) - C. hemisphaerica

Overview
NameXLOC_008409
Unique NameXLOC_008409
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000203:19311..25526+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008409 ID=XLOC_008409|Name=XLOC_008409|organism=Clytia hemisphaerica|type=gene|length=6216bp|location=Sequence derived from alignment at sc0000203:19311..25526+ (Clytia hemisphaerica)
GTAATCACCTTTTTTTGACAGTATGATTTATTCTTCTTTCACGATGCTGA
AAGGAGGAACGTTAATTCTACTTCTTTGGACAAATATTTCTTTGTCACAT
ATTTTGAGATTGCCAGAATGCAATAATTATGAcgcaaagttttcaaaaat
atcatacCATCAACGCTTAATTGgagatattttgaaaactttagaCTTTA
TCTCACTGCGAAAATGTTTGACAAAATGTATGTGGCATCCGAGATGCCAA
TCAGTGAATTTCAAGAGACAAAATGAAACTTGTGAGTTATTAGGTAATTC
TTTACAAAGTAATTTAACAGGGAATGTTTTGTCTGTACCACAAACTGGAT
GGATCCATTTTGAAACGGACTATGACGAAAAAACGGTAAGTCTATTTTAA
AAACCAGTGATAAATTCGTAATTGAAGAAATTACTTATAAATAAcGTTTC
ATTGGCCAAAATTAATTATCAacgaatttaaaaaagttttttaattcgCC
AAAATGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNAGAAAGTCAACCATCCCATGATAtgacactcgtcccaagttaga
gccgttgacggtatgccggatatccaaaacaataacaatccatTATATGA
TATACACAATCATATGTCAATGTCATAaggcaatttcaattttttgcggt
actttcaaaatttcagaatttttgggcaCTTTCTTTGGATTCGCTTATCC
TTTTCTTGTCCTGGATCCAATCAAAACCTGCACGTAAAACATACCTCAAA
ATCAGTCACGTTTATAACATTATAACTCGGTCTTTGACGACTGGGAAGAT
TCAAcgacaaaattttgagagttaaagTAAAGTTTATCCCTCAGCGCATT
CAGTGATGAATCCGATCTGACCGTTAGTGTCTCTTCAGCCatttttgaga
tgaataaaatgaatcatgaaatttttgttatctaaagggatgggtgaaac
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAATGCGatcgaaaaaaat
ctttctcagCTGAATTCCATGATAGGGAATGTTTGTGAAGCTATTATAGT
CATTGTTTGCACCAATATAAAGTTACTTCAGCAAGTCATTAGTCTCCATC
AACAGCTTTCGAAAGCAGCGAAATCGACGAAACTACTTGAGTgaagtttg
taaacaaaaaagcaagTTTCACACATTCATTATGTTCAAAAAGTANNCGC
CTCGATTTTTGTCCCGACACGCACATCAActgcagcgcagcgagcggctc
cagaatttggctaatattgcataccaaaatttgatggtgatttaaaaaaa
cattagaatatTAAGTCAATTgtattatgggcatgaaatcctgaaaaata
caaatattgttttgggaatggatttttagcaagtatttgatcaattgaat
cacggTTCAGCACCCGAATTGAAATTTCACAGTTTAAGTAAGTTGTGAGC
AAGGAGTCgatgtttgtaggttttaaggagTAATagtgtattttgatttt
aacgtacagttttgaaaatatttaggtaccaatgATTTAATTGTAACATA
agtaactttgcagtgaatcactgttaAAAATTTGAGATACCAAATGGACT
ATTTCGCATAAAAAATTAttcgagaaaaataattttgtaggttttaaggg
gtatccactggtatttTGAAAATANGAAATGAttcgagaaaaataatttt
gtaggttttaaggggtatccactggtatttTGAAAATACACAACAGGTAC
CCTAGCATTAGTGGTACATATCCTCCACAACTGAGGCGAGAAGGATGAAG
GCACCATCTATAGTAAAAAAAGGGTGACTATGTGACAGGATACTTGAAAA
CTTCATAAAATACAatcaaatcttttcatctaGTTGGGTCGATGGTGTAG
CAATGGCAATAACAACCCTTGTAATATGATCACAGAACGTTGTGAAGACA
GATGCGTTGGCAATTATCAATGTGTCCAGCATGGTGGTAAGAAACAAAGT
ATTTTCGAGAACCTTTTCGGATAATTTCATGCGTCTCCGGGGAGAGGGAT
GGTACTAGGATTTAAATGAATTTCGtaaattttgtacattttctgACGTT
TTTGCCCTCCCTAAAGAGactatttccccaaaatttcatcaaaagttttc
aaattttagtccaaatttcaagaatttatgaccctttaaGAGAGTCAATT
TTTGTTCTCGTAatttacagagactcaatttgctttttaatggttttgta
accctttgaggaactttcgagggtgtgaaaaagggacccttatggctccc
GTTTTGCCTAAGTAGCCCCAACCCCCGGGTGCGTCTCACGAACAGTTTAG
AATCCCAACACTAAAAGCCTACATCCAAAAAAATGAGCAGAGCCCAAGAA
TCATGTAAATTATACGATTAAATATCATCTTAGCGATGCACCACAGAAAT
AAGTGATATTTTCATAGCGGAATTCTATTTAATCGAATAGAAAATTTGGA
GGAAACAAATTTGTttagggaactttttttggcgggaactaattttggcg
ggaactaattttggcgggcagcAAATGTCCTCAATTTTTTCAagtttggc
gggaacttattttggcgaatagttAGACTAGTATAGTCGTTGAATGAAAA
ACATCACACCGGAAAATCTTACTAGAGTGGTAAAATCGGGAAACCGTATC
TAGAACGATATTCTCAAATGTTATTTTCCTTCTCTCTCGCACACTAATTC
CCGTGTGAACGTTTTTCCGATTATACCTAGCCNGTTATTTTCCTTCTCTC
TCGCATGCTAATTCCCGTGTGAACGTTTTTCCGATTATACCTAGCCAGTA
CCCGACTCCTAAATTTTGTTGTGCACGGTAAATAACAGACTTGTTTACAA
GTCTagcgaatagtgaatttttttaatttttgtaggaactaattttggcg
aatgacagcgtaaatctgctctattttgccttattttgagcaattttgaa
gaatttcaggggttatttagacAAGGAAAGTTAGTTAAGTTACACAACTT
TGCATCGAAGATAAATCCGTGTTTCACAAAACGGCTAAGATGgctatttg
ataaatttttatttatgttGTCTTAAACatctaattcaatttttttcaga
atcTCTTCAATTATACATCAAAGATATCCAAGGATCTTCTACACACAATT
CTGGCAACTTCCCATTAAATGCTTCCCCTGGTTCCGCTGTGGATAAAGGC
CACACCCCTAGATTTCCAATTAACGTTCCCTTTCGCAAATCAACATCTta
gtaaaaattttatttgtcaGACAAAAATTTGACGAATTTTGGAGCCTGAC
ATAACAATTtgctacaatttttttcttaaaacaagcaatgataaaatgtt
tataaaaattctattaCAGAGCAATTACAGTCTTTAGTCCAGACGGCTAC
ACAATCGTCTGATCATAAATCTGGCAATCAACCAGCTGAACTTGCATTCG
ATGGGCTAGAAGACACACATTCCTGTACCAACAGAGAACAGTACGCACCT
CATTAGATCAAAGCAATATTCAATCAACGTGTTTTTATTGAGTATGTTAT
ACTTGTCAATCGAGCTAATTTGATTGGTACAGAACACGGAGTTCGGAatg
atttcattgattttttcactgttctgtATATCGATGGACAAAGCATCAAA
ACCAAGTTTGGAAATACTGGGCATATCGTAGGGGGCCGGAAAACAATGCT
TTGTCAAAAATATGCTGACGAGTTGTATGCAAATCAACCTGTTACTCAAG
GACCTTACGGATATATGAATATTGCAGAGATTTTGATTTACGGTCGTTCT
GACTGAGAAAGTGCTCTCTCATTTTCAGTTCCTCAAGATATTGAAGATTG
TAGGAACGATACTTCGATTCTTATGCATGGAATTGCCCTTATTTACCTCT
GAAAAGAACATCAAATGTCGAAAAACCCTATCATCTGTTACAATACTCTT
ACCTATCAGATAGGTTGATAAATTGACTTATCAAATATCGATTTCTGGCA
TTTTAGCAGTTATCGAGGTACGaataactaaaaatcgattcactcgaaaa
cggCAGGGGATTTGAGAGCAAATTTGTTTTGTCAATTCAAGGAATTATTA
TCTATTGTAGACATTGAaaggaaaaagctggtttttgccgatttctcatG
TGAAGCCTTTTCTGCAGTAAGCGCTTTAAGTAAAACAACCAGAAAAATTA
GAAAGATAAGTTGCACAATGTCCACTAAATTTGCCCATATGCGCTGACTT
TCgttttgcttgccattttcAACGAATATTCCCATCATTCTAACAAATTA
AATTAGACTTGCTTCCGAAATTCAGGAAAGGCCTTAACCCTTCAAGTATC
TTTCTATCTTTTTAGGAGGGGAAGCATCTTGACTGGggggttggtatttt
acagacctgtCCGTATTTATATAGGGTTGACTGTACTAAATAAATTACCT
ACACAGCTATatgttttcttataagcaagtgtctgtcactatatcaggct
cgcattatgcttagca
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015017TCONS_00015017Clytia hemisphaericatranscript
TCONS_00015018TCONS_00015018Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00015017-proteinTCONS_00015017-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:19311..25526 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.13	0.15	0	0	0	0.06	0	0.92	0.16	0.13	0.17	10.4	5.39	3.94	1.85	1.87	0.71	11.7	8.7	3.49	4.56	0.67	2.17	2.01	3.37	0.94	0.38	0.15	0