XLOC_008040 (gene) - C. hemisphaerica

Overview
NameXLOC_008040
Unique NameXLOC_008040
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000187:40093..52291+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008040 ID=XLOC_008040|Name=XLOC_008040|organism=Clytia hemisphaerica|type=gene|length=12199bp|location=Sequence derived from alignment at sc0000187:40093..52291+ (Clytia hemisphaerica)
CAAATTTTGGTAAGTGTTTTATCTGAATTTTTAGTTGTAGTCTTTCACCA CATGTTCacctaaaaaaaattgacagtcTGCACATTTTGATACATTGCTC TTGATTGTTTGACAATGCAATGGGAGGGTTAATGCTGATCTCAGAGTTTT CNACTTTATGGAGTCTTTGTGGGAGGGTTAATGCTGATCTCAGAGTTTTA GTCAGCTTAatgccaacaaaatttctttgaatgctagcaaaactgagttt gttatttttcgttCCCCTTGGAGACAGATGGACTGTATTCCAAGAATTAA GCTTTGCAGGAAAATTATATCACCAAGTAAGAGTGTGAAGTATTTGGGTG TTCACCTTGCTTGACAATCATCTAAACTGGAAGATTCCTACTTCTTTCGT TGCTGCTACATTGAGAAGGGCAAAGGGGGCAATATCCAAACTTCGTCACT ATCTTCCAATTCACAtccttctaaacatttatcatgcaatttttgcttCT CATAATGTTCGCTATGCTAGTCAACTCTGGGGACTGTGTGACAATATACT GTCACACATAGAATTCTTACTCTTCAAAACACTGCACTAAGACTCATGAC CTTTAGTGAGATAAGAACTTCTGTCACTCCCCTGTTTGCTGAgcttaaat tactcaaaatctttgatcaggtgaaagtaatgaatatcttatttattcaa aaatacctccagggtaatcttccatctgatgtcctatcaacacttaattt tgatgaaattgatcacaaaactggcatcagcgtagcgactccagaagtca tgcaactttcgttgacgtcaaaccaaatgtttcatttttccgtgaacttt gattttgaaccctttgcacttttttctatgtatgctaaagcgttccggtt tttactaaatgaaatcccgtgatcttagctttccagcggtataaaacact gtggacacgggctaggcggcaaattggtaaaatgccgaacgttttgcaac attttgaaaattgtttgccgacgggagaaaaaaaatttgcaactatcgaa gaacaaatgtgtctggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNaaactttgtatgtttatcagaaaa agggtgaggaattcaaaaatcacaattgctaattctagttctttcatttt catgtagtttttttaacttttttgcttcttatagcatgggaatgtcccaa aaaaagtttttatttctgctgaaatggattttcttttcatttggggtttc tcctttcagaaaaacttattctatactcataagtttttgttcctccattt ccagaggccccttgaaaatgggtcctaccaccttttttgactcatttcaa ccttttccaagctattttcttcaaaaacaaaaataaaacaatgcaatgtc ttcttttttcaaaaaaagatatatctttcgttattttgataaatatacta aatattttacaaatattttaatataataatattctagcaccatcaaagaa ttctccctccaaatttcaggtctctagctacattagaaaaagagatatgc aaaatttaagaagcatgactggaaaatttcttttttttcttttttgacac atttttcaaatttttccaagctattttcctaaccttttttttgacatttt tagccaaatttttgacactaaaatttgaatatctttgcaaccactaatcc tctggaggcctatgacccctcattttctttctttttcaaagctctacaag ataggatagattttgaaaaaaaaattaaaacttgaaaaatcttctggagt tgctacaccaggggcaaagctattaaactactaaaactttcaacggtcaa aaccacaaattttggacttaactctttctctcgtctttcgtctttcgtca aaacaatggaatgagttactaataaatcatcctgacactgattttcacaa ccttgatgctgatgaactaaaatctttagctacaaaattctatttagaca aatacaaagctgaagacgaataatcttttctttttgtgtATGTGTGTGTG TGCGTGTATTGTGTGTGCGTGAACCtagtgtgttttcccagggtgggagg ggTTGGGTGGTGTAACAGGAAGAATTTTATAGATAAAACTACTCAAAGAA ATTGTcataaaatgaaagtaaaaatatttcttatattcattattttgtgt cGCTATTGatattatgataatcgtttattcattttttctttagttctgta ataatttttcagtttcttctaggttccccattgtaatgtattagagaaat ctatttttttatgtaaggggttatcctgctgtattgcagcgaaaatatat tcaattcaattcaattcaatgggaacaaatcttgagaaaaatgaACGGCA CACTGTTGTTTGTTGTGGATGGGACAAAAAATTTTCACTCATAATCgtct aagcttaaactcctaccgtgagatcaggtaacttgcatcagtggaggcta acatgcatagccctcaaatggaTGACATGGCTGGTCCTTAGGCGggcatc gaaaaaatgctctgtttgCGTCGTAAGGGGTGTAAAAAATGCATGTGGGT GGACCGGCGGTCGGAAAAATTCCCGGGGATTTTTAAATTATGCCAGTAAT TCGGGGGCCAGTGGTGACGcgaacaaaacaatttttcgatggccgtcAGA GCGAttaagaaaaaagctatactttaaatgaacaaattgcttttcctgga tttttttccgcttctccgcaccggaaaatccgcaaaaaatatgatgcggg cgggtgacgcaaatagaacaatttttcgatggccgcctTAAGGGGACCca tccatattcatttgacaacgcataacgtcaaattgacgttatcttcataa ataatgacgtcataatcacgttttcttaaaaaaactcaattcTGCtgcta gaaaaaaattaagttaatttcgcctttccatccggaatttcttaatccaa aaagaaatatttacagaacaacaaaagccttttagaaatttgttcttaaa ggcattgcatattctgttttcatgccattaaaaaattccaccaagacgga gtacacacacaaactttcaaacacgcaaactgaaagcagtaattatgacg tcacacgtTCAGCGgcttcagatcaatgttttgatttgatcgtgtGACGG TTCTTTTCCCacgagaataatttaccgtcagccgaataaggattattttt gtaccttcgcgggtgaCCTTTCAGCTCGAGTTTATATATGTCTTATGTTA TGGTTTTTTGAAGTGCTTGTtctaagagatgagcgaatttgattatttct agttttcaaaagaagcaaatttaatctttcttctacaagattacacttta atataatgccaattatgcactttctttttgcatatgttttgcatatatac tttctaagggaatttcaccacagcaattcagccaccataatctttgcata caattcaatttggcggatagaaaggcgaaaaggtctatacggtattctac atccaaatatgcttccaaaaatatatagtttGTCATGGTTTAGGGACTGA AACTGGGTGGGGCTGAAAAATTAAttcaattctgggacatgcattaagtt acccgagagtGCTAGGTCCGTGGTTTTTCAAAATTCGGGTTCCTTGATCT TGTTCACAAAAGTCAGGTCTACCCTAGCTTTGAAAATCGAAGATTGCAAA TGAACAAAGATCGTTAATAGCTTCTGGTTTTTTGCAATGCAAAGGTGAAT AGATTATTTTCTACTAAGAAGAAACAAACATGTAGATATGTTACTTTATC ATTTtagatattaaattttgaatttcatttttatacatttttcctTGCCG CGTCTTTTGTACCACGGGAAAATACGCGACTTCCAACCAAGCTAccttag cctgggtatccagactcaaaattttataaaaaatacttttacctcattat acaaagtttctaaaattttagagtctggtgccaACTAAAAAAGTTGGGTA CTTACAGTTTATTTGAttctgcctgtgagtgaacccttgttgacagacta tcaaaactttgtaaacccCGGCAGGCACATGATTAACTTactataaaaaa tcttttacaaactcaaaaaactttcaaaactactttttcaaaacatcagc cacatttataaaaaggctcctttccagcggccattttgtttagaaatgaa cctgtattttcattttcttttgcttCTCTTTTTTTGcatggtcagctttt tccataaattatgcacgcgcatagaaaaatatacaaaatccCGCAGAAAT TTGGATCAGTGACTGGTCGCATATTGGCCAGTCAGATGCACTTGATATGC AGGGacaaatatccctgcagacaagttagttggaccagacagTAAACCAG AGATTATAagaagattataaaaaactagacggtgaaatagtttactgtct ggatatccaggctactgtgagagaagtttatatcgaaatctgcaacaaaa acgaaagtggtctcttctactgattgcttcccgaTGCTCCTTCGCaactg tttatcaaatttccaccaatgaaatTGCTGCATTTCACACAGCCCTTCTT TTGGACAagctttttggcacccgtggcctctcagtgccttcaACACGGgc agctgtaaaatcccaccctttatatttgtttcaatccgtgatcctaaAGG CTTAGGttcttttctcatcttcaatcacagatcagaaagcaggaattttg atgcaagagttagattgtcaacaaagtgccataaaaaatcattgaataaa agaaaaactttgaatcttaaaaacattttcattttgaagaattggtgcaa aaaagtgaaacatggaaaagtttcactttttattgGTTCAATAGAAATAa gggatttggaaaactttctatgtttggttttttgcacaaactcctgtaac tatgggcaagcaccctgttgctaagatgtttgTTGAAATTGGAAGCATTT GGGGATCCCTCTTCTGACTAGCAAAGAATTGAAATACAACCACACTTATG TGACCGCCATTAAGAAACATTGCCATGACAATGGACATAATTGCTCAATT AATGACTTTAAAATTGGTGGACATGcatcaaataaatttcataagaGTCA TTATTAATTTCTAAAGACAGACCTGACATTATTAATGTGCAGAAAAAATC TGTACCTTTGTGCTTGTTTTAAGTGATGTTTTTGTGGAAGAGGGCATGGT GAATTTctagtttgttattttttgattttcttgatttatttAACTAATCT GTTAATTTTTCTACTTTTAGACTAGATAATGCTCAAAGAAATGAGCGAAA GATCTCGTAAATGTATGGTGTTTCTCCCTGTCTAAAAgaaagtgaaacca ctgaaaatgaaaggaAAATCGGCCAGCACTCCAattcccgtaatcttgat ataggagtttaaacATAGACTGATAGTAAGTACATGTaaagtcaagaaaa agaaaactgcTGCAAAAAGCATGTAGTTCCCTATAGTTTATTGGCTTGAT ACAGTTAGAACATTAAAGTTGTCTCAAAAAGCAATAAATTAAGTCTTTTG TGCCGATGCGGACAGGACATATTTTTGGACCGTATTAGTTTTTACCagtt aaaaaattcagaatagaTTATTTAAAGACAATAAGTGTCTTTAACGAAAT TTACCCTTTAGCATGtcagaacaaaacaaaaatggggGTTCTCTAATAGG AGAAGgtcagtcaaaatttcaaactcattttcaaaatgtcaaatcCAGTT TATGAAAAGCCCACATACAGTATGCTCAGAAAAATATGGGGATCACTTAT CTTTCATCCTTTAGTTTTTCAGATattctaccgggtgcaccacaaaaaag tttctctccttaaaagtaattttctcgaaatctaaaaattttaaaagaac cattcctattttattggaaagaagaaagaaaaacttaaattatgatgggt catttattgaattcgattcattagatcaaaatttatgctcaattgaataa aaaagttacttttggaaagtgctcaaaaacgttaaaaatcgacctatcaa attattcAGTAGCATAATTATATGATATATCAGAATTTTTGTCTCGTATT TTcgtaattagctgtctaaatgaccttttgttatttaaaggacggttgaa tttcaatgaaaggaagaaaattcgtcaaaaaaggccaaaaaatctggtag aattcataaaaatacatcaaatatggggttcgaggtagatccagccttac atagactttatccagtctagaaccaaagatctgaggaaaatttcggtaaa actgaattaaattaattttgatgaggattttaaaccctttccacccttca gtttcaaaatttatgtgtttagttaatgaaaaatgctcttaatcatgtaa aggctattgccaTTGCCAaacaagtaaaaatttgataggtcgatttttaa cgttttcaaggactttctgaaagtaatatttttattcacaggagaaagtt ttggggaaaaaaattaccacttttccaatctttcacacttttacaacttt cctaaccaaaaatttgtaaataatgtTTGTAAAAATGGGGGATTTTCCAT GGTTGCAACACGAAAGcacgaaatagaaaatatttgcataaattttttca agtaaaagtGACCTTGGAAAATCGTAATTCATGCCCTctataatttatta ttttatgaaatcgaaagtgaaagttggAGGATGATATGCATAATTTTCAG CCGAGGCTGGAATAATTATGACATCATAGATCCaattttcccaccaaaat accaaaacttTGCAAATCCAAATGATTGCTGTTGTTGGCTGAGAAAGTTT GGAAAAGTCCTCTTTTTCACATCTTCACAACTTTCAAGGAACCTCTTTTG AGGTGGGAAAAATAGTAAGATATTTTACaacttttattgtttttacaact tttttagaCCAAAACTTTGACTTTTTGATGAGAAAAGTGGGAGAATTAGC AAATTTATGNAAGTTTGGAAAAGTCCTATTTTTCACATCTTCACAACTTT CAAGGAACCTCTTTTGAGGTGGGAAAAATAGTAAGATATTTTACAACTTT TATGGTTTTTACAACGTTTTTAGAACAAAACTTTGACTTTTTGATGGGAA AAGTGGGAGAATTAGCAAATTTATGTACCAAAACTTTCTCCTGTCAATtg agtataacttttgatctgattaatcgaatttaattaatgacccatcaaag tttaagtctatctttcttctttccaacgaaataggaatggttctttaaaa atttttagatttcaagaaaattagtttcgaagagagaaacttttttgtgg cgtaCCCGGTATTTTGAAGTTCCATTTATTTGAAGATTTCTGTACAAAAA CCTCCTGCCATCTAACGTCTCCACGGCACTGAAATCaaaagtgtttcaaa aaaaaatctgcgCGGGAAGTTTGGGGTAAGAGTTTTTCTCCATAGCGCAA GCCGTAGATCTGAGGGTCACTATATCATTAACTTTCCCTTACAATGGAGC AACCATAAATATACGAAAGATAATTGCACAGTATGAAAGATGAAGGTCTA AGCTCTTAAAGATCGTAAAAGTacttgttaaaaagataatcttaACTGGA TGATTTCAaaacctttcaaaaattttggaaatttttaagatgaaaaaaaa aggagattttttctacttgactaaaaattttgaaattatactttttgaaa ctttgaacttcgttgatttcaaatatgtatgTCATGTAGCAAAATGGACT CACTTTGGAGGGAGAAGACATAACCTGGACCCCCCCCTATATGGACCCta atatggaccccaatatggaccccctcAAAAATGGTGGGAAAACATGTTGG TTAGCATTCGGTGCATCACATTAGAACAGAGTGGttagaaatcatgtcaa atAAGGTTGTAAGATTATCAATTATCAGCCAATGTAAAGCActgaaaatc aaagattttctccGTCGGGCCCAACTATAGTTGGGCTCTCCTTTACCACA ACTATAAAGAAGAATGTTATTGAGGTTCTGTTCAAAATCAAGGAGATTAA AAAGACTGATTGTCCGAAAGATTTCAaggtttttatgattttgttaaaGA AAACGTATTTTATGCATTTTAAGGAGTTGAGGATTTAAccttgagagttg aaaatataACCATGAGAGTTGAAAATTGAACTTTTCTCCTATTGTCGACA GATTTCCTTGAAATCCTTCAAAGCTAGCAAAGATCAACTAAAACTCTAGA AAGTTTGTGGTAAAAAGATGTTCACCATGGAAGTATTTTcccaggaatga caaaagagcGCAAAACCCTTTATTGTATTTTTGGGTGTACCTGAACCCTG GAGGACCCTATGTCTGCACCAAAGCCGTTTTATGTGATGTTTGAATGAAC TTTAGCTCAAATTTTATAATGATAGCGTCATttactagtttgagtaaaga aaacgagtTTCAAGTTAATTTCAAACTCAAGGTTTGGTGCCATCatcata gcttcagccaggtttctagctccccccaacaaagtaaggtcccccaacaa tttagctccccaaaaattgccttgtgctaggtcccataacacttcaggtc ccaagataaacaaaaacaaaaaattgttctcccgcccccgtggagagaag tcaataaaaagttaatgcgagtacagtactgataaatgaaaactaaattt tacttgtatcaatatttatgtttattaatcttttgctttttatatttgat ttaatataagagatcttttgaaattagcggaacagcccccagagtctcag tcagatcatctagGCCACCTccaacaatctaggtccccTCAAAtaatttg gtaattttagcccccaggctctttaaaggccaaaatatttcttagctccc ccccaaaaaaataaggtaagggggggggctgaagctaTGCCATCTAGGAT ATAATATAAGCAATCTTCAGAGAAATAAACGTTCTCTATCAGGCTCAGGG GAAGTAATGTATGCTGTAGTAATTTGAAACATCCTGAAACATATCATTTA CTTGATTTGCCTAAAAGATCatgttcaaaaatagtgtgacatttagggaa ctcaaaaattgagtatttcttgaataacttgggaaatatttcaaataaaa cgttgaaattttatatgatgatcggtatttacacaaagaacatattttga tgaaaaaaatggtaANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCAGGTCCAAA TATGTCCAAATATGTGTTTTGTCAGCCACCTCAAAGGAGGAAatggtttg tttgaaaatgacaCTTGAATCGGTAACTAGAGGTATCATTCATATCAATC AAAACAGATAAAGGAGCAACATTTTGAAACTGGTTGGTTTCAAAAAGCCA CCAGTGTTGTCAGCCACATAAACGACTCATAGCTTATCTTGAAATATCTT GTAACCAATTGAGCCACTTAATTTCGCTCCAAAACAATTGGAAAGGTTAA TCGTTCTACTTATGCTtggtgaaaaaataaactgttagccaccaaaaata ctcattttattaacaaaattgtcagccactttgaaaatgtcacaaaacag gcctttatttttgaacacgATCAAAACTGTTTGGAGTCTCTGTTGTAAGC TTGCTCAATGCCAATTAAATATCCCTAATACTCAGAACAGAACACATAAA ACTGAGTTTGCCATCTTCCTTTCCCAGTGGCTTCAGATGTACTGCATTCA AGGTATTaaactttttgggaaattttaaCACATTAGTATAAGAGTGGTGA AGCATCTTGGTGTCCTCCTAGGTTAATCTAAACACcccacagacccggta ggattttttcagccagcggGATAtaaataacgaactgaaactggatgggg attgatattctcatattttttatgaattgggatttcaattcttttgtttt caagtcaattaaatccagtggggatgggaaaaatgataaatattccGAAG TGAggattgttttatttgatttctttcagtggggacaaaaattggaggat aattttccaacgGAGGCAATATTTTGGCGAGTTTTTCCAGTAGGAAGGgt tcccaccgggtctgtgagaagggggtgtatctaAATTTGAAGGTTTTGTT GCTTCAGTAAAATTAAGAAGGACAATAATTGtgcttttatttgcaaaaaa accatttttccaACTGATTTCCTTCTTCGataaattaaaaacaatatttt ttaatttttaattttctagaaaaaagaataaaataatgGAAGAAGGGACT GAAAATGAGAATAATGAGGTTGAACCACCTGCTGGTCTTGTGTTTACAAA TATAATTCCATCGACATTCACCATCATTGataaaagtgaaagtagtggGT ACCAAGTTCTTGAGACCGCACCCGCCCAAGAACAATACACAAGAGTTGAA AAGCGAAAACGTTGTGGTTATGCCAAACGAAGGACTTATTTCTCGACAGA GTTAACAGCAAAGAAACTTAGAGTATTATCAAATAATGGAATAGCTGATG AActacaaaaattttttgataaatatccAAGAGCAAAGGATTATGTGAAT TTGTCTGATGATAAGAAACGATCTGCTTTGCATTTTGCAGCATCTAGAGG TGCGGATGAATTGGTTCACTTGCTGCTACAGCAAGGAGCTGACCCAAACG CACAAGACTGTAATGGAAATACACCCTTACATTTAGCAGCTTGTACTCAC CATATTCGAGTTATAACATTATTATTGAGGTTTGGAGGAGATGTTAAAAT GACAGATTTATCTGGAAAAACACCATTACATTTATCTCATTCGCGTTTAA AGATGCTTTCTAGAGAGCGCAATGTAGATAGTAAAAAGTTTTCAGCCTAC ACAATGGAAAAAAGGAAAGCGGAGGTTTTGGAAATAATTTCAATGTTGAC GGAATATTTTGATAAGTGTGGACAGAAAGAAGATTATTTTAAAATGTGTG AAATGAAAACGCAATTGCTAGCTGTTCAAACAGAACAAGGGGTAAGTTTT AATTAGATTTGATGCtattttttggaataaactAAAAGTTTTCTCATTAC AAAAACTGATCTTATCAATCTACTTTACCAATTGGTATACTATAATCCTT TATATCGTCGATTGCAATAATTAAATTTGTCATTATCATTTTTTGACTAG TCGATTTATGCTCTTTTAGGTTGATGAAGTCAACAATTTGCTTTCCAGTT TTACTCAAATGAACATTGACGCATCATCAAACAAACCGTGATAGTCATTT GGTTAACTCTTAAAATCAATTGCATAGGTTTCTAGATATTTGTTAAGCTA CAGAATATATATAAATCCTTAACCCTAATCGTAAtagggggctgtttctg ttcggagaTGAAACTATtgttaatagctcctgaaataatcgAGCTTTTgg aatgaaattttctgtaaattactaacttttttatttagcttcaagaTTAA GAGATGATACAGGATCAGCCCCCCTTATtatgaaccgcccctaaaagcct agtatgaataaaATAGGGTTAAATTCTGGAGGTTTTAAGTTACTTACTTA CGTTTTTATACACATCTATATTTTGTATCAGTCTATTTTGTAAGCTATTT AATTAATGACAACTTATGTAGTACGTCCTTTATTGTTTCCTCTTTACttg ttttctaattttctaataCAGAACTTGGTATGGAGAAAGTTTATCACTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00014360TCONS_00014360Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00014360-proteinTCONS_00014360-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:40093..52291 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
72.63 69.6 21.54 14.76 35.69 23.81 27.94 29.45 19.15 18.28 18.27 11.81 15.52 11.56 15.72 14.99 29.15 21.95 11.98 13.82 18.46 18.77 71.28 63.96 13.83 16.81 36.6 27.65 54.89 63.09