XLOC_005607 (gene) - C. hemisphaerica

Overview
NameXLOC_005607
Unique NameXLOC_005607
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000101:474656..478785+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005607 ID=XLOC_005607|Name=XLOC_005607|organism=Clytia hemisphaerica|type=gene|length=4130bp|location=Sequence derived from alignment at sc0000101:474656..478785+ (Clytia hemisphaerica)
ataaaataaaatgaagataAGATAAAAGACGATAAAAATATGCTACCATT
ATGGAATTCAGATATGTATACTTTTGGTGCCATGACAATgacgaatctga
ttggttattGGTTGATCAACAAAGCAATGAAAAGAGCTCGAATATGGAGA
TATGTTGTTGATGGTGAGGTTTTGACTAATCGAGATCAATGGATGGTGTG
TAATATCATTTGCTCGCTTATCCATTCAATTGTGTCTGCAGTTTGGACGA
CCACTTGGTGagctattttttttcttctaaaaattCCTGATGTGTTAAGA
ATATTTCCTTCAGGTCAAAACTTTTAGGATGCCATTGAAATTGCTAGTAA
AATGCTAATAACAttgttaaaagttcttccgtcttaGACGGTTTCCGTCA
CAGCGTCGATTATATAATTGAATAGACGTTCTCAAGTCTATAAAGAGcct
tttccgtctcaaaattcgGCACAATTCACCAAAATCTCAAGACTACGTGC
TAATTTGATGTGTAAAATTCATTTTCAGACGAAAgaccttgctttgacca
ctgtttAAATTGCTAGAATAAATGCTAATAAGGATTATTAAAGTATCCCG
ACGATTTAACTACCATTATGACCGAAATACAAAAGTACTTCTATCCCCCA
AATCGTGAAGTTTCTTGTAgaatagactggagtcgttcataatgcgtgta
atacagtagtataggcgttctATGATAATACGAATATTGTTATATGTGAT
TCAGCTTGTATAAATATTTCATTAACAATAGCAAACCAATATAAATATGC
AACTTTTGGCTTGCTCataggtttctagacgactaaaatttgttccctct
TTTACtctttgctttatttctaccgggtgtcccagaaaaaagttctgctc
tttgaagtgaattttctcgagttttatgaatttttaaaagatcaatcctt
ttgcattggaaagaggaaagataaacttcaattttgagggtcatttatca
aatttggtcaactagatcaaaaattatgctgaaatgaataaaattttcac
attttggaaaggctcaaaaacgttgaaaatcgacctatcaaattttataa
cctaattattacttttttgcaggaataaaaagtttaaagtggacatgaaa
acaaaaaatgcttgaaataaTTCTCTAAAGGactaaaaaatttcatttga
gtcatttcaaattattttctatgGAATTCAGCTTCAAGTTTTGGCTTAAG
GACCCCTAAAGTCAAAAGTAGGGCTGATTTTATCAGTGTAGCTATTGAAG
TCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTTAAA
ATCTTACTtcgtttttcataaaaagataCTTCCATTAGGTTTTTATTGCT
TCAACAATGAAAATCATGATCCATGCAATTATGCTTCTATAAGAATTTGA
TAGGTCgcttttcaacgtttttgagcaattacaaacaaaagaatttttta
ttcattttggcTTAATTTTTGATCCAGTTGACTAAATttgacaaatgacc
cctcaaaatttaattttatccttcctctttccatagtataagaaagccgc
ggctggaatatgtaccgcattgtcttttcagttaattgctgttccatctc
tgtctccgagctttataagaacatcaagattgtTAGTTTATTATTGGtgg
atagtttttgaaatttttctcttattttccttcacaagaagattttttgt
ttctagatatctttgaatctgtacccaatgaAACACTTTAACTGATtgtg
gacatattttagggggattttgtggaaacgatagtttttcgccaaaatta
aaattataagaactatatttaagataacaactttcctgtcagtttgaatg
ataaattttgaaggtgctggcttgaaattttcacagaattatcTTAATGT
ACTATCTCATTGATTTCTAGAAAggtttcactgaaatattgtgaaggcat
ttcgaggcaccttattaatttttgagttctttcagcctagccatttgtgc
ttgtttaaatttcttattgttaatctttcctgcacaatgatattataatg
caagtgtattatcaagggcatatcattgatgtctaaaacgcactgcgaag
taagtattaacgacaaactaataaagtttaccattaaagatgctacacta
cttatttcttgatcaacaaatagtcatcaaatacgacagagatagaacag
tagaaattcagatgttatcattccagccgcggctttcttatactatgctc
tttccaatgcaaaaggattgattgtttagaaattcataaaactggagaaa
attcacttcaaagagcggaacttttttctgggacacccggtactATGTTT
GAATTAGTCGTCAAGTTTCTTCTTGTAGAGAAAAGATTTAACCATGATTT
AACTCttatacagacattctcagcaATTTGatttgtgtgttttttattca
gttttttagcTACTCCATCGTTGGTTGAAGATTTGATTAACAAGACATCG
TGGTGGAGTTCTGCTCTTATTGCAGCTTCAGGAGGTCTGTAGTGTGTATC
ACTATTGACACTCTAATTCGACCTTCTTCTATTTGATACACTCCAttgtt
cgatgaaatttaagtccccgtcaacaagaaaaattcataaacgacgctct
actatcgatacgctcccttattcgatgaaaatccaattctccttggaaat
cgaattagaaagcgtcCCATTCTTCATGGTGATAAAATGTAGCTGTTGTT
TTGTAAGCCAAGGGTTTGAACTTTAGTTCTAGTAAAGGACTTTAGGACTA
GTCACTTGGTTTGCGAAAGCTGTGGAACATTTTTCGTATTGGCTTTGCAg
caattaatttttcgaatttttgtgtGTCACACTTTGTTTGCAgcgaaaag
aaaagaagaaagcaAGAGTCTTGAGAATCCTAGAGAATCTGGGAATCTTA
AACATACTTATTCCCATTTCTCATAGGTTATTTCATGTACGACACATACG
ATATCCTATTGAATGACGGTTTCCGACAAAAGCCAGTGCTGATTCATCAT
GTTTTAGTGAGTTGTTCTACCTTCCCGAAACGCTCTCTTTTTCAGCGAAT
TTGTGGTGTTTTGACCAGAGAGTGTTAGATTTGccgagaaatttttttga
aaatgttcgtCAAGATCAAGGAAACTTCCTTTGTCCTTGAAAATTGTTAT
TCTATTAAACTTTCTCTGATTTtctattgatttttgaaaatttctctttt
atttAGATCTTGCATGCATTTCCATTtgctttgatgacgtcatcgtacCA
TGGTTTTGCATTGTCAGCTCTTTTGATGGAATACAGTTCAATTTTCCTTC
ACTTGCGACGTCTTATGAAATACGCTAACAAAAAACCGACTATTTTCGGA
TTGCCGAGAATTTTCGTTGAAATGTTCGTGAAAGTCTTTCTCGTTTTAAC
AATGCTCGTATTCCGACATTTGCTATCGTTGTTTTTAATACGTCATATGT
GGCAAAATCGCAACACCATTACTGGGATACCATTTTGGATTGGCATTACG
TCATCAGTTGTTTTTATCCCAGTGAATATCGGATTATCTTATCGGGTTTA
TAAAACCAAAGACTTAGAGAAAGGAAGACGTCGCACCATTGTTTCACCTT
AGTTATACGGCACAGATATAGATTTTTTTTACTGGATTGTCCCGTGTTGA
AAAATGCTGAGTCAGCAGAAAAAACtagattaaaatatttttttagcgaT
GAAAGATTTTTCAGAGAAAAGTACAAGCAAATTTCTTGGAAATACAAGca
tttgataacttttgactgcTGTTTGCTTCAAGGATGGCGGAACCTGGGTA
TTTTAATGATGACCTTGATGAAGTACTGATAAGTTTCATTCCTGATGAAC
TAGTCAAGTCAATAAAGAATGGCACTGATC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009994TCONS_00009994Clytia hemisphaericatranscript
TCONS_00009995TCONS_00009995Clytia hemisphaericatranscript
TCONS_00009996TCONS_00009996Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009994-proteinTCONS_00009994-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:474656..478785 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09	1.15	0.53	0.72	1.72	1.21	2.03	1.46	1.63	0.92	1.02	1.42	0.62	0.38	0.91	0.94	1.17	0.84	0	0.47	1.18	0.59	1.13	0.98	1.11	1.47	0.5	0.53	0.35	0.97