XLOC_005163 (gene) - C. hemisphaerica

Overview
NameXLOC_005163
Unique NameXLOC_005163
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000091:420543..428873+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005163 ID=XLOC_005163|Name=XLOC_005163|organism=Clytia hemisphaerica|type=gene|length=8331bp|location=Sequence derived from alignment at sc0000091:420543..428873+ (Clytia hemisphaerica)
ctatttttttgaatttttctaaatatataaatcaaaccaatcaaacattc
tctCTATACATGAATTCAATTTTAGATAAGTTTAACTTTAAAAGCATGTC
GCGAAGCCCGCCAAGAAATATTATACCAGCTGGTAGAAATACAAACAGTA
ATGACTCTCTTTCAATGCGTCGAAGAGTTTTCATTGGAAACTTGAACACT
GAGAAAACTTCGAAAACAGAAGTTGAAGAAATATTCAACAAGTTTGGAGA
ATTAGAAAGTTGTTCTTTACACAAGAATTTTGGATTTGTGCAATTTGTTC
GTGAAAAAGATGCGGATGCTGCTGTTACAGCGATGCATGGCAAGATGATC
CTTGGCAAAAGAGTTGGTATGTATTTTTAGAATGTGCTCCTATACTTCTT
TTTCTTTACCATTATCCTAAAGTTGAAAgttcacaatttttttaattttt
gaatacTAGGCTCCTCAGATGTTTGATAGATTGACTATTCTTATCATAAT
AGCTTCATCCCCCATTCTCTGCCTGCAGGAGCCTTTAGGAGACggaattt
ttctgaaatttcataaGGGTACTTTCAACTTCAAAGGGAAACTGCTAACT
CGATTCAATAATTTTTATGTAATTATTAAATCCAAGGGGGATCTTTTGAT
CTTGCATTTGTAGGGTACTTAGGTCTCAGGAAAGGGACCTAAATTCTTTA
GAGTTATGAACCTTTTAAGTTATTTTGTTTCTTTAACACTCAACAGCGCC
AAATATATGCTAATTTTTTTCTGACCTCTAGATGTCAACTTGGCTGGTTT
GCGTCGAAAGACACAATTGAAAGATAAATATGAAAAACCACCAGACAAAG
AAGAAGTTGTACCAGATGATATGCGCAAATTTAGCGAACAAGCATCACGC
AAAAAAAGGAGGGATAGGTCAAGGTAAGCATTTTTTAATAGGTCTCGAAT
ACTCAGTCCATTCTTCATGGTGTGAATCACCTCCAATAAAGGTAGGAGGG
TTAATAATATTTTGTTTAAATGTATCACATCTCTGTCATATATGGGTGAA
TTGCGCCAAATCTGTACCGTGGTTTTGTAAACAAGGCAAACTGTATTCAA
ATTATCATTAAAGTGGATGTGTCAGGTATTAGAGCTTTAGGTATATTTCT
TCTTTGTAATATTAGCAAAAATCTGTTATGGACGGGACGTCCCGTCCATC
ACACATATGCCTGTCTTTCTACCAGATTTTTGAAGacagtttgttttgtt
ttcaaaaccacGGTACAGATTTGGTGCAATGCACCCATATTGGTTAGCAA
AAGTTTTGCCTGCGCTGCCATTTACATCAATCTACTGTTGAAATTTTTGT
GTAGTTAAAAGGTTGATAGACCACCACTGTAAATAGTGGGAGGTCGTGAA
ATTTCAAAAAGGGAGGAAACAATATAAATACGGGTGTGGAGTTCCCTCTA
AAGCTTTCTGCATCTATAATAAGTTTGATGACAAATTCCTTTTTCGATTC
ACTGCACTCCCTGAATATAAAAATGTTCTCGCAACATACTAGTCAGGCCA
ACATTAGATAAATCGGTAAATAATATACTATTGAAGTTTTATCAAAACCA
TGTCCTTTTTCACTCCACCAGATCACCACGCAGAGAAGGTCGTGGTGGTG
ATCGAAGAAGATCACTTTCGCCAATGTCAAGATATGAAGAATATCGAAGA
GGTCCTGGGTATCATGACAGGTTAAccattaaaatttgatacttTTCACA
AGGATGAAACTTCTTTTGACggaattaatattttttaaagtttaattttt
cactttttgaacgGACTTTGGAAAACAAATGAGTGGAAAATATAAGCGGA
TatttgaatatctttccaacgttACCAATTTTTTTACTATATGACGAACA
CTTGGTAAGTTTCGGTTAAAAATAAATGCACACCTTTTTGACACAGACTT
TAGACGGAAGGAATAACAAGGAATTTATGAATTAAATGTTCTCTACAGAA
GATTATGTTTCTCACACCTTTTCCTTTTTCACAGACCTTATGAAAGAGAC
ACGGGATATGGTCGTGCACCGCCTCCATCAGCCGCCGGTGGTTACAACTA
CCCACCACGTGATCCATATGCTTATCACCCTCCAGCACCTCGTGTTGCTC
CAAGACCTGCTATTGATTGTGAAGTTGTTGCATTGTCGAAGGAAGATAGG
TATTGCGTCTTGTATTTTTTCTTGGGCGAGATTTCGTTATTAGACTGGTT
GTATGAAACGGTTGGGTTACTTAGATAAATGTATGCAAACAGGTCTGTAG
GTGTTTTTTCACTGGAAGACAGTCTTGATATATTGTTGTACGTgaagaaa
attaaagaattcctgtccaactatcttccttcaggagatttgggtggcag
agcagccaGCATATGCATTTCCTCCTTATTaagactcgtcagcactgcat
actgcaccctggctagGCAGATCGAATTGCCTAGCATCTCACACCATAAA
ACTAATTCTGGTGCAGACTGAAATAGATATATAGTGCATATTGCATTAGA
TTGAGCCAAAGTTCAGAGAGTTCCTTAAAACTCGTTGATTGTTCCTcaca
ttttaaagattttgagatCAAGGGTTGAAAGTACCTTTTAGTCATTCAAA
ACTCATTAAATTTGAACTCGTCAATTCATTCTTTTCAGTCGCTATGCAGA
AGATGTGGAGAGTCGTTTGCGAAGTATTGGCCTGGTTTGCAATATTGGTT
ACCCACCCATCGATTTATCCACAGTTGAAGTTGTCGATCGAATCGCTCGC
TGTGGTACTCTGTACGCCATTGTTCTCAGCTCTCAAAACGCCACCCATCA
ATCGTGCACACTGAATGTTTTACATGGTGCAAGACAAGGTTTGTTTGTCC
ATCTTTTTCAGATACTTTCCTCTACTGTTTAAAGCTTTCGAACTCTCTTG
AAGATATTTATATTGAGAAGAGCTTTTAAAATCATGTTTTAAGCAAGCAG
AGTGACTTGTGCTGTCTGacttaaaattgaatattatattTCAGGTTTAA
CAACTTTTCCACGGACATTTTTCTCACCgactttttcgtttttcttcttt
ttcatttttcactcattttcgATGACCATCAACACCTTTTTGATGACATG
CAGAACACCGTAACATGCCGCTCAAAGATGCACTCTCTTTTGTGGCTAGA
AATTTCGACCAATACCTCAAAGACTTGAGTAGGGAGCCTCCTCCCCCTTC
TTCTTACTACCCTTCATCATATAACTACCCACCCCCTCCTCGTGCAGATT
ACGGTAGAGGGTACCCACCAGAACCTGCATACGGAGGCTATGGTGGGCAA
CATAGCTACCCACCTCCTCGGCATACGGAACAACCAGCCTACAGGAGTGA
GGAACGGGTAGGTGGTTATGATGATAGGGGAAGTATAAGTAGTCAGGGGA
GCGAAAGGAGCTCAGAGACCAAAAAACTCTCAGCTGAGGAGCTGAATGAA
ATGATCGAAAAATTGAAACGTGAGAAAGAACAGTTAGGTAAGCacaattt
tcctttcttttgttttgttttactttgatcttgttttttatatttgtttg
tttttgatatttgatGGCTATGTGAGTGCATGAAATCTAATACAAATGAG
acggagtttttataagatactttaataattggtcagtTGAAGTAGTAAAg
atgatgcgttctttagaaaatttAATATGGAGAAAGTCATTCAGGTATTT
CTTATTACAATGAATTTGGCtacatttattaatttttacaatttaactTC
ATTTCTATATTTTCTGTTATTCTTTTAGAAATTGCTGGCTCCGTTGTAAA
ACCTGCTACAGAAACACGTGAAAAGTCAGCAGAACCAGTACCTGCTGCTA
ATGGCGATCAATAAAAATGAATCCAGAGACAATAAATTGGCATCATATTT
TCTGGAAAGTTTTGAAAGAGtactaaaaaaacttttgctcaagacttaag
gtggtagtctacccaaaaataaaaaatcatcgaaaaaattgtcgaattct
ggtttttgggtgttttgagatccttaggtTTTTCTGaacatcttctgaaa
atttcagagctatatctttatcattcaggccgcagtgagcatttttatcc
tGTTGGGTGCTTGAAAAATCGCCCTAGCAACAGAAAAAATCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTACGccaaaagaaagctctttttacgcccttttcgggcgtcaaaatat
tattttccgtggcattacgtaatccttaaaattaaagatggtagctgCAG
TAGTGCAACACATCAAAACCAGCTGAAAAGCAAGCTGTAAGCATGATTCT
ACAGATTTCTTGGCAAgttttagatcaaaacttaatctctttgattgaaa
tgatttatttaaatGAAGAATGGACTCTACAGAATCTATAAAGTTGCTCT
ACATTGGTTGTGTTGCTGGATTTCTgcgaaaaacatttaagttgtcggca
ttttgttttgagcataAGACAATGTGCTTTTCGTGGCTCACATAATGTTT
TGTAGTGGATTTAAATTTaactgagatatttccaagcacaacatgatgta
acagagatagaaatgtgcattataatgaactggaccAAACTTCTGGAGAC
ACACATTCTCATCTGACACCAGCCATTCATAACCGCCTAGGCGGTAACCG
AAGCGAAGGCGCCGCCTTCGATCAAGCCAGCTCATTGTCANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCAGAGAGTCATGCTGGAATTTCAATGAACAT
TTTGTCACACTTATGTGGctgttttcacccaaatttgatgttatcgCAAG
ATTACCGCAAAGTTTGCTATATTGACGTAACTTTAGCGCAACATGTTTTA
Gttgatttttggataatttattaatttttgtgaaatgttttactttaact
tATGAAACCTGACTGGTTTGATGAGTattcagtgaagaaattttttgaaa
agagctttccagcTTAAAATGATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACACCTTGTCAGAAATATCT
TAGGATTGAGAGTAGCtacagacttgaaattttcagggaagttTCCTTAC
ATGATTGTGCATTGAATGAAtggattaaaaaaatttaaaattggtttcct
gatttttaatctcaaaaaagggtttttttcagtttcttaccccctggaaa
aaaattttaattttttttttcactcattccagaccttttctaaatattag
tcatttaaaaaaaaaactaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTAAA
ATTATGATAAAGATTATATGATACACTATTTTTTGAATGCCCTTTCAAAA
AGGTCTTCATGAAACAAAGAAATGATTTTTACAATATAAGCTCCGCTTTC
AAACTATTTATTACTTATTGCTACTTGAAGCCTGGTATCAATGATGTACT
ATTAAATAAACTAACCAGGTTGGTAAGAATCTTAAGAACTGATAAATGGG
CTTACAAACGGTTAAAAAATGGTACAAAATATTTAGTTAAtgccaaatta
tttttttagtgtTTTGCATACAAAAGGTTCTGGCGTcagcaaaattgatt
ttgaagttAACCTTTCCTCATCTCATCTCGATCTGTGTGNTAAACGGTCA
AATGGTACAAAATATTTAGTTAAtgccaaattatttttttagtgtTTTGC
ATTCAAAAGGTTCTGgcgtcagcaaaaaattgattttgaagttAACCTTT
CCTCATCTCATCTCGATCTGTGTGACAAATTCAGAGCTTCTTCGCACAAT
TATCAAACGATCTAAGAATTCTAGTCATTTGGTGATAAACTTCTAATCAG
TGattgaatttcttcaaaaatgtaTTCTGTTACTATTCTCTTCTTATTTT
AACAGGATACTAAtggttttttgcgattttttcaattttgatggtATGTC
TGTTTTCTCGACATGTATgcatttttctggaaattttaaCCGTTTTTTGG
AGTTCTTGCCGTTTTGTTTTTGGTCTGTATGCTAGATAATTGCGAAATTG
GTAGTCTTCTCAATTTCTTGGACCTGaaatatcttaatttttttagcaCA
GAAAACAAAGAAGAATTTTATGAATAGAGCCTACTTTCTAATACTAACAA
ATGCTTTGTTTCTACCATCAGGTTATTCGAAATGCGTCAGGAGTTAAATG
GATATAAAAAGCATTGTTTTCAAGTCTCAGGAAATGACAGAAGTGCTTCG
ATCAAACACAATTGCAAAGAATGCATCCAGGTAAGGTAGTCATTGTAGTA
AATTAATTATGCCATAATCTTCACAAGCAAACCTTTCGCTTAATTTACCA
GAATAtgaaataaagaagaagaaggtTCTGCTCGTGTAACTATTATACGG
ACGTCTCTCGATTAAGTTGAGGTTCTTCTACCGCACTCCACTCCATTGAT
TGTGGTTGTGGAGTACATATAAAAAGATTTCGTATAAAACTGAGCTAGGC
AAAGGCAAACTTCTTTCAGAACttataatgggcttttccagaaaaaaatt
gaatatggggggtggaggatataaaaattttcagtgatttacccacggac
aaagtgacttttggtcccccggacaaagtgattTTGGTCCCCCGGACAAA
Gagttttacccccggacaagcatcagttgaccccttggacgacccaaatt
acccccggacagagcaaatttatcccccagacaaggcaaattttgatgat
tattCGCTACCCCctgacaatatatcctccacctcccatgtacggacatt
ttctggaagagcctaataaaagatatttctttttaaatttttgtagcCCT
CGAAAATCGATTTCAAGTTTTTTGGGTCAAAACGTCACCCGATCGAGGGC
AATGAAGCCTCGTGCGTCCTGCTCACTCAGATGAAGTCCTGCTTAGTAGG
AGTTAAATATTGTTCCACTTGTTATAAGCCTTTGCTGACAGAATTTATCA
AAACTCTTTTGGATAATAAGAATTCTATAGAGAGTAGATAATATGACAAC
CGAGATTAAATAAAGTAAATTACATGATCCAATCTCGAATAATTCCAAAT
GTATGGTTTTGTTCACCCAAAATGGATATTGGATATTGTTAAGAAAGAAC
TACTTTGGGCGTGCAAACTTTCACGAACAgtaactttcgcgattttcacg
aggcttaaccttttttttgcaaaagttaatGTCTTTCcaactcgcgaaag
tttgtacgccgtAAGTAGTGGTACTCCAATAGACGATATTGAAGTGAGTT
TATGCACTCTGCTCGGGTTGCTGACCGTTCAAAGACATCCTTGAATGAca
gaatttttctaaaattcgtGTACTGTGTACTGTACTTCATATATTGAAAG
TTCTGATGGAATCGCTACCTACTCttaagttccaaataaacgcccccctt
gttaattttttaaaaatttccaaccccccgg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009197TCONS_00009197Clytia hemisphaericatranscript
TCONS_00009198TCONS_00009198Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009197-proteinTCONS_00009197-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:420543..428873 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.18	27.18	33.9	34.18	14.88	13.92	21.37	22.74	20.51	25	20.07	14.49	17.97	14.97	19.08	13.14	29.66	23.91	11.96	13.8	11.3	14.02	26.7	24.92	16.23	14.47	15.43	11.77	19.1	19.12