TCONS_00009197-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009197-protein
Unique NameTCONS_00009197-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009197-protein ID=TCONS_00009197-protein|Name=TCONS_00009197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
IFLNFSKYINQTNQTFSLYMNSILDKFNFKSMSRSPPRNIIPAGRNTNSN
DSLSMRRRVFIGNLNTEKTSKTEVEEIFNKFGELESCSLHKNFGFVQFVR
EKDADAAVTAMHGKMILGKRVDVNLAGLRRKTQLKDKYEKPPDKEEVVPD
DMRKFSEQASRKKRRDRSRSPRREGRGGDRRRSLSPMSRYEEYRRGPGYH
DRPYERDTGYGRAPPPSAAGGYNYPPRDPYAYHPPAPRVAPRPAIDCEVV
ALSKEDSRYAEDVESRLRSIGLVCNIGYPPIDLSTVEVVDRIARCGTLYA
IVLSSQNATHQSCTLNVLHGARQEHRNMPLKDALSFVARNFDQYLKDLSR
EPPPPSSYYPSSYNYPPPPRADYGRGYPPEPAYGGYGGQHSYPPPRHTEQ
PAYRSEERVGGYDDRGSISSQGSERSSETKKLSAEELNEMIEKLKREKEQ
LEIAGSVVKPATETREKSAEPVPAANGDQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005163XLOC_005163Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009197TCONS_00009197Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR004154Anticodon-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 427..454
NoneNo IPR availableGENE3D3.30.70.330coord: 30..184
e-value: 1.5E-20
score: 73.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..434
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 452..479
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..226
NoneNo IPR availableCDDcd12341RRM_hnRNPC_likecoord: 57..124
e-value: 3.52624E-31
score: 113.472
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 58..124
e-value: 6.8E-19
score: 78.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 59..121
e-value: 6.7E-14
score: 51.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 57..128
score: 16.517
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 40..126
IPR004154Anticodon-bindingGENE3D3.40.50.800coord: 236..351
e-value: 4.9E-8
score: 32.3
IPR004154Anticodon-bindingSUPERFAMILY52954Class II aaRS ABD-relatedcoord: 245..347

Blast
[Close]
BLAST of TCONS_00009197-protein vs. Swiss-Prot (Human)
Match: NCOA5 (Nuclear receptor coactivator 5 OS=Homo sapiens GN=NCOA5 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 5.140e-22
Identity = 41/105 (39.05%), Postives = 73/105 (69.52%), Query Frame = 0 
Query:  240 APRPAIDCEVVALSKEDSRYAEDVESRLRSIGLVCNIGYPPIDLSTVEVVDRIARCGTLYAIVLSSQNATHQSCTLNVLHGARQEHRNMPLKDALSFVARNFDQY 344
            A RP +DC V+ ++K+   YAE V  ++R +G+V ++ +   ++S  + ++ ++R G+ +AIV++ Q+  H+SCT+N++ G  QEHRNMP  DA+  VARN+++Y
Sbjct:  194 AERP-VDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERY 297
The following BLAST results are available for this feature:
BLAST of TCONS_00009197-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCOA55.140e-2239.05Nuclear receptor coactivator 5 OS=Homo sapiens GN=... [more]
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