XLOC_004971 (gene) - C. hemisphaerica

Overview
NameXLOC_004971
Unique NameXLOC_004971
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000088:457775..463377+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004971 ID=XLOC_004971|Name=XLOC_004971|organism=Clytia hemisphaerica|type=gene|length=5603bp|location=Sequence derived from alignment at sc0000088:457775..463377+ (Clytia hemisphaerica)
aaattaataattaTGGAGGAGGATGTCTGGAATGAGAATGTTCGAGAAGC
CTCCAGTATTTGGCTGTTGATGGGCAAAGGTTATCGTATTTCCAGAAGCA
TCCGTTTACAATGGTTTTTCCAATATCTTAACAAGATCATTTCACCAAAA
TCTCCTGAAGAAATAGTAAGTCTGTTGTAAAAAATTCTGTCTATTCTCTT
GTcatcttttgtcattttatctttTGCTTCTTGACACTAACCTTTTTATA
CTGAAGTGATTTCGTGCTGGTTCTACTGTTTTACTTCAGCATCAATCATA
TGCAAAACACATTTCCTAACCTTTTATACATGAAAAGTATGTTATTATAC
TGTATAGCTTTTCCCTTGACATTCCAGGTAGATTCTGAAGAGGAACTTGA
GGTTCTGGCAATACTTGAGGGTGATAATGAGCATGACCTGCTCGCTACCA
AACAAATACAATCCTCTGAATCTATTGATCAAAGTCTACTTCGTATCACA
CCAGAGACTCGNTATATATTTTTAGTGTAGCAAAAAAGTATGGAGGAACT
CAATACAGGCAGACGAcctaagaaagaaaagaaagaagagtctCCTGAGG
ATGCAATAGACCCTGAATTTTTTGTTCGTGTTtcttttcacaaattttta
GCAATATCTTTGGGACTGGCTTTGTATGCTTTCTTATGTTTTCATCCTTC
CCCGGAATCATATTTGGACAGAATGGGCGGACCTGGACAACGACTTCAAT
ATCTCCGCGAAAATTATATGATACATATGAGAATTGGAATGTTTATTGCT
ATACTGTTACATATTATTGAGGCATTGTATGCTATTAAACTTGCGACTCA
ACTTGGTTTGACACAGGAAACCATCCAAAAGTGGGCCATTCAAACAGGAA
TGATGGGTTACTCATCTCTGCAAGATCTTATCAAATATCATGATGAGAAA
GTGGTACAAAAGCAAAAACGAGAGTAATTTTTTATATGGACTACtaacat
tttcttaactttaacTTATTTACAGGATTTTTTTCTATTGAATATTTAGC
ATTTTTATACCTCTAGTATTTATTTTTACAGGACTATAAGATTGTTCTCC
ATTTAGAAGTTCCAGTTTACAATTCAAcataataattttataaatcatAT
CCGATGTGATGGATACTTGTTTTTAACTTTTCCAATTTACAGTGTTATTT
TGTTTTCTGATccttttaaagaattaaaaagtttcactaaaatagtatTA
CTGAATGTTAGTCGTCAGTCGTGCCAAAATTActtgaatctgattggttt
aatAAAGGAGTGAAATTAATTGTTAGTTGcattattaccactttttgtAC
TCTACGACAGGGGACACTTTGGCCCCCCTCTTATTCCTTTCTCTCACACA
CCTTTTGTAACAATAAAGTAACTTAACttcattattaaaaaaaaacaaag
aaacttcGCATTGTAGTAGATTCTTATTAAAAATCGCACTGCAACAGCTT
CTTTTTCGACTAAAGAAGAGAGAGGTTTTTCgaatgtttgtaaacaaaaa
aagttgGAGTCTCTTTCAATAGAAAAGtaagaaaggagaaaataccataa
tttttttcttttgttactcgtgattaatcgtttgaggggtaatcagatgg
tttgagattttttgcctgaagaaaccCTCTGTGGTTTTGAGTAATATCGC
AAAGTATTTTTGTCTAACTATATTCTAAAGTTGAGATATCacaatttaaa
atttctgaaaatgggttCTCACACGGTTCTaagttgaaattctattgttt
tttactcaaagtaaaaaaatagtAACTTAATTATCTCGATTTTGGGAAGT
ATTTAGGGGAAAATATTTCGAGGTTTTGCTCAGGAGGACAATAGAAGGAT
TTCACATGCCAAATATCCCAAACCacctgattatccctttaattgcactc
caaaacatACCATTACTAGTAAGTCAAGCAACACTTAACTATCAGAGTGA
TTCTGTAATCTTTCTGCAACACTTTGTTTGATACAGttattatataattt
gtttttcttcttaggGATTTAACTCCTTAATAagcaaaaattaaaagtga
AACTAAAAGAAATCAATAATTATGGAGGAGGATGTCTGGAATGAGAATGT
TCGAGAAGCCTCCAGTATTTGGCTGTTGATGGGCAAAGGTTATCGTATTT
CCAGAAGCATCCGTTTACAATGGTTTTTCCAATATCTTAACAAGATCATT
TCACCAAAATCTCCTGAAGAAATAGTAAGTCTGTTGTAAAAAATTCTGTC
TATTCTCTTGTcatcttttgtcattttatctttTGCTTCTTGACACTAAC
CTTTTTATACTGAAGTGATTTCGTGCTGGTTCTACTGTTTTACTTCAGCA
TCAATCATATGCAAAACACATTTCCTAACCTTTTATACATGAAAAGTATG
TTATTATACTGTATAGCTTTTCCCTTGACATTCCAGGTAGATTCTGAAGA
GGAACTTGAGGTTCTGGCAATACTTGAGGGTGATAATGAGCATGACCTGC
TCGCTACCAAACAAATACAATCCTCTGAATCTATTGATCAAAGTCTACTT
CGTATCACACCAGAGACTCGACTAACATTTTTGGATCGGCAATATCGTTT
TGTGTATTGTATTGATATGAGTCCCTCTATGGCTATGGTGGTAAGCTAGG
GCTCTGAGCTgacttttttaaaattatatggTTTTTACAAGAGCCTGATC
GGGGTGGTCTCGCTTAAATGGAGAAGTAAGGTGAAGTAAGGCTCAGTGTC
TATAagaaatgattattttttctttggacaaaatttttttaaatttaaat
tcagATAAGTTTTTAAAGCTTGGTTCATCACATACTAGTGTCATTTGCTA
ACTCAGCCCCCTTTGGACCCCTTTAGATATTAATTACAATGACTTTTTCT
AATCATTTTATGGTTATCCTTTATTGAAATTTTATAGGATAGCAAAACTG
GAGAAGTTTTGGTCGATGATATGTTCAACAGTATCAAAAACTCCCTAACT
GGTCTTGTACAACCTGTAAGTAAACTTGTATCATTCAATGCAactgaaaa
cattttcatttcctTCTCTGTTTTTATGGATCTGTATTTGTTGATTGCAA
TAATTGCTCAATTCTTTTAAAAGTAACCCATCCTGATCAGTTCATAACGA
TTTGAATCTAAATTTGAAAAGGGTTGTCTGGGATCATTATCAACATCTGT
GAGAAAGATAGGTGGGATTGCATGAAGCGTGACCAGTAAATTCAAAGCAA
CTAATAAGGATAATATAATTAAGGAAAAAATGTAATTCATTCATAATAAA
CTCATTAGCGTGATTATCATAAGTaatatttgattctttttagtTTTGTG
TTGGAAACAGTCCTTTGGAGCTTTCTCCCAGGCTTGATATCACCGTTCTT
GCTCACACCTACACTGACAACAAAGAATGTCAAGTAAGTTTGCTGTGTTT
TTAAGAAGGGTTTTTTTGTATATCTAATACTAAAGTATGTTAACCAAAAA
GGACTGGGGtaacttaaaatatttttcatcaaaataacatAAAGTTGCAC
TTTAATCGATAAACTTTGTTTCAAGTGGCCCACctcttttaatgaaaaac
aacAATATGAATTTGTGTATCATAACCAAAAAGCATCTAAAGCAGTCTTA
ATTCTGCAACAGTTTCTGGCTGGACAGAAGTGACCCCAAACCTTAAATAA
GCATACcacatttgaaaaaagttttggcCATAATACATTATTCTTCCTGA
ATTGGTGAATAATACTGCATTATGTCACCTTGATTGATTTGCACTATTAT
TGACTTATTAATTTTAGGTACTGATGCAGGGattttgtttgaattcaaaG
AACATCAATGATTTCTTATGTAAACTTAGAAGAAAATTACGAGAATTGTG
TGAACGGTTGATCAGTGGTATTGTCGAAAACAAGGTAGATTCTATGACTC
TTATATACTGAttattagattttcattttgtatGGATAAAACGAAAGAAG
AGACTGcttcatatttttgtttttgtgtgtagACGAAAAGTCATTGATTT
CAGGTACTACCTCAGTACCTCAGGTACCTGGGTACTATTCCACAATTTTT
CCAAACTGCAAAAGCTTGAAAACCATGTTAACAAGTTAATTATGCCTTTT
CGTTAACAGGACAAGGTTGACAATTCTCAAGGTTTTCAGAAGAATCAAAC
AAGTCTCTTCCACATGATTCGTGACAGTCTACTAGCTTTGTACCTCCTTC
CCAACAATGCTTCTGCAGGTTTGAAAATGATCTCATATGATAGCAGGCAC
TTCTGATGAATAAAATGAACGTTTCAATTCGAAATTTGAATATTGATTTT
TAtagaattttcatatttttaagaaaagaaagccaatttttttccaacaa
CCCTCTCAAAGTTAAAGGGAAAATGTGTCTCCTGCCATTTGCTGACATAC
AGTGTtattaaacaaaagaatttgagcaatttttccccTTTTGTTGATAA
TTCTCTTTTGTCAGCATTTTAAGAGGTGCGCATCCCTTCTtatcatgaaa
aagaaaatctttaacaaGAGATTTGTATCCAACTTTAATGTTTTACTTTA
GCTATCGTTGTGGTCACTGATGGTGTGTTCATTCTGGAAAACGCATATTT
CACAGATGCATTACTAGCACAATGTAGAAACTCACAATCTGTTGTGTCAT
TCTTGCAAGTTGGAACTGGATTTCAAAGAGCCTCCGTAGAGTAGGTTGAA
ACACATCTTTATATGGATCAAAATGGTGTCTTATCCTGTCTTATGCTCCC
TACTTTATCCACCCTTTTCAACAAAGTGTACTTACCCATGCAGTACCTTC
TCAGTACTCACTGtcttttcaaatttagatttgTGTATTTGACTAGCATA
ACGGTAATTCACTTCTTTTAAGTTAGGCGTTAAACATATTGGTCAACGTT
AATAACGGGCCTCGTGacatttaaagggacataaaagtaataaaatgtat
aaacattgcgcgaaccattgtcattaaagagaacaattaaaatcacgtgt
ccaaaacaaacttgtaaaacaattgaaacaatcaaaatcaggcatatttg
tttttattttttattttgacatgtgacattttgtatcccgctgcatacga
tttgtttacaatttcgtcagtacttttatgtccctttaacaaGTACCAAA
AGATATTAATGAGTGATCTGTTACCAGTCCTCTTATTTTGACCCAGCTAA
CAGCAAATTTCACCTGTCCAAACCACGAAAGTTATTACAATACGCTGGTC
GAAACATTCTGTTTGCTGCCTCAAGTGCAATTTATTGATAATCTATTCAC
TGGGCTTGCtaagagttaatttttcattcgtcAGCCTATCAAAAACAAAC
CAGAACCACCGAGTAATACTTTCCCGAACtttcattttgcctaaaacTTG
TGTGTCTTTTGTTCTCAAACAGGTTTGGTTTTGTACCTCATTGCGCATTG
ATGCAGTTTATTGCAACAGCCACGTCTGGTGCTTACCTTTTGCAATGCCC
ACC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00008859TCONS_00008859Clytia hemisphaericatranscript
TCONS_00008860TCONS_00008860Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00008859-proteinTCONS_00008859-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:457775..463377 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65	1.88	1.04	1.27	6.8	4.2	4.89	7.72	3.36	3.3	5.23	3.44	4.58	4.59	3.28	4.25	3.23	3.81	2.49	4.03	4.61	3.85	1.52	3.17	7.13	5.8	2.58	1.48	2	2.44