XLOC_003942 (gene) - C. hemisphaerica

Overview
NameXLOC_003942
Unique NameXLOC_003942
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000073:646087..650053+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003942 ID=XLOC_003942|Name=XLOC_003942|organism=Clytia hemisphaerica|type=gene|length=3967bp|location=Sequence derived from alignment at sc0000073:646087..650053+ (Clytia hemisphaerica)
CCCTCAGCCAgaaaaacactattcttataaaaaacgcatGTATCCTACTA
AGAATGAAAGATGATATTTCATATCGatgttttatttcatttctttagTT
TGAtattaaaaaacaacaagatgACACTCGGagaaacagataaaaatgcT
TTAATTGAAGCAAGTATTTCAGCTAAAGATTTTGCTTATGCAAAATATAG
TAATTTTCGAGTTGGATGTGCGCTTTTATCACAATGTGGTAAAACAATCA
CAGGATGTAATGTTGAGAATGTTAGTTTTGGGTTAACAATATGTGCAGAA
AGAACTGCATATTGCAAGGCTATTAGTGAAGGTATCACAAAATTTAAAGC
TATTGCTATTGCGACAGATGTTAAAAATNTTAGTGAAGGTATCACAAAAT
TTAAAGCTATTGCCATTGCGACAGATGTTAAAAATGGCAGTATGGTTTCT
CCTTGTGGAGCCTGTCGACAATTTATGGCAGAGTTTGGAaatattgatat
aattttggtTAATTTAGATAGAGATACTAAAGAAACAACCTTGTCACACT
TGCTACCTATGTCCTTTGATGAGGATGCACTTCACAATGGACAAGAAAAT
ggaatcaaaaattaaataattctGTTTTGAAATCTGGACAGTTTGCATTG
CACTGTGGatacctttattttcattaaattatcatttttatgaaGATCAG
TTCAGGATATAAAATTGCAGCCTTTCTAATTCAGAGTTATTTGGGTcgac
aaaaaattttaaaattttattacaaTAAGCACTTTTACGTTAGCAAAAGC
TAAATTTTCGTCGGCATTTGCCTTGGCAATAGCCGAATGCTGACGCGAAA
CAGTATGGCTGAGATTGATATAGAACTTTTAATATGATCAGATTTGAGGA
CATTGAGTGATTTTTCATCaagataaatataaaataatagCGTACAGTAT
GAATAAAATATCTGCTCAGTTTGAGGAGGCATAAACTCTTATAATGTTCC
TCTttcaaggctcgaaataacgatttcaagtgggtcggacaaaatgtccg
atcagggttgctttagcttgaaaattatgatttttgggtcggacatgaag
ctatttgggtcggacaatgtccgatgtccgaccgttgtTTAGAGCCCTGA
CTCTTTATGAACTGATAAATTTTTCCAAAGTCTTTGTTTAGAAACATGAT
TCGTTTTTATTTATTAAGTTAGGTTTAAATTATTTGGATAgaattgtctt
ttttatttggctCTTCTTTACATTTTCACTTGAAGAGGTGATAAGTGTTt
tgttgaaatatttatttctaattatttgtttttgttttttattttgcacT
TTATTTAAGTAAACAGTATAGTTTTGTAGTAATTTTTCATATGAAATATG
ATGATTTTGTATAgacaattttttatcattttgataAATCCATCGTTCAG
CTAATTTATAACACCTATTGAATTTATTTCCAATCTTTGTTTAGAAACAT
GATTCGTTTTTATTTATTAAGTTAGGTTTAAATTATTTGGATAgaattgt
cttttttatttggctCTTCTTTACATTTTCACTTGAAGAGGTGATAAGTG
TTttgttgaaatatttatttctaattatttgtttttgttttttattttgc
acTTTATTTAAGTAAACAGTATAGTTTTGTAGTAATTTTTCATATGAAAT
ATGATGATTTTGTATCTTAGCTTTGATCTTTGACTTTTGAGAATTGCTGC
TTATCTAACACCCAAATTTTGACATATATAAGGAGGcccccaagcggttt
tcgtgatgacgtgatagggactttttttgcagcgtgattatgtgatttgg
aaattttttcttcgtgattgcgtgatgagaggtcaaaacTTGATCgttat
ttgaaagatttttgagtatacgtaatttgaactttttcaaagggatgcgt
gattgtccattttttttttttgctgatttgcgtgatcgtgattgaagacc
aaaaaatgcgtgatatcgtgatcagagttaccgctggggggcctctatAA
GGTTAAACAATACAAAGATTAACTGAGAAATAATTACTATTTTTCTCGAG
CTACAAAAATATCTAtaaaattttcaccaatttatagaaaaaatcaaaaa
atatacaatttctaAGAGATTAGGAATCGACTCCAACAAGATATGTACGA
AAAATCGTCAgaatgttttaaatgttttaaactaaaaagaaaatgCATAA
ACTATTTTCTTATGCTTTCtgataatgggctcttccagaaaatgtccgta
catggggggtggaggatatagtgtcctggggtagtgaaaaatctacaaaa
tttgtctTGTCAGAGGGGTAAAAAtgctgtttgagggtaattttgctctg
tttgagggtaactTTGATATTCGGCcaactaatgcttgtccgggggggtt
TAGACCTGCTGTCCAGGGAGTCAAAATTCACAGTGTCCGGggtgtaaatt
ttcaaaaaatgttatatcctcaaCCCCNggggggggggggggtggaggat
atagtgtccgggggtagtgaaaaatctacaaaatttgtctTGTCAAAGGG
GTAAACTTGCTGTTTGAGCtggtttgagggtaattttgctctgtttgaag
gtaattttgatattcggccaactaatgcttgtccgggggggttTAGACCT
GCTGTCCAGGGAGTCAAAATTCACAGTGTCCGGggtgtaaattttcaaaa
aatgttatatcctccaccccccttccatattcaaatttttttctggaaaa
gcccaatatagCTTTTATTCCGAATGAGAAGCTAATCTATACCACAAGCC
ATCTGGGTCAATTATGCGAGTAGGTTAATTTATAAGAACGTTAGTATTAG
TAATTGATTACTTTACTCACCAGCTGGcaacaacgttgttttaacgttca
aataacgttatttggatgtTATGAATGTCAATTGgatgttgttttgacgt
tgtgtgccggctgggtcaCCTTCTTATAATAAATATGTTTTGTTCTGACC
ATCATTTGTACAAAAGCTACAATATTGTACAAATTGATAATAATGATATG
AAGCTCATAgaatattccagaaaaaatctgtTAATGGGGTGAAGAATATT
ATAATATTGTTTTAATGATATGCGCCTGAACACTTCAATTTTTAGCCATT
CCCCACCATCCCTTGCCACGTGTTTTGACCCTGGAAATGGCGGTTTTTCA
CAATCTTTCCATTACCCCTGGAGAAAATGTCTTCCACCCCCTATAAACga
ctttttttctggaagagctcgATCATGCTTTAAACAATTTCAATGGTCTG
TTCGTTTTTTTTGTTCCATTCTTTCATATTGAAGAACAGCAAGTACACAA
AGATGTTTTATTATTTATACCATAATTACGTAATTCCTCCGTTTTCTTTT
TAGCCTGCTTTTCCAATGGAGTAAAGACAAGGTGTGAGGATCCAATAGAT
GATTAGTGTGGAGAAAGACATCAAGTAAGTGTCTTTATCACATAAATCGT
TCACCACGATAAATTCTTCATATGCATTCCATGTTGGCCAATAGCGGAAC
ACCAAATAACTGCCCCAACACTGGACCCCAAAATGGGCCACAATGAAGAG
GCCGAAACAGCCGAGCCAGAAGTTGGAGCAACTTGAGTCGTCATCACATA
ACATCACAAAGAAGAAACTAACGAACGCCACCAATGCTAAAACACCACTG
AGCAAACAAAACAAGGGAACGTTTTCTCGTACAGGACATCCTCCAAGGTG
CGTGTATCCTAAAACAATAAAGTCACCATTTATGTCACTGGTTAAGACCA
CAAATATCtcatataaaacactagatagagctactctgtatttcccaagt
gAAGCAAACTAATGcaccatctttgctgaaagtaggtcacagtaGGCCAC
AGTTCGGTACCAGCAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007046TCONS_00007046Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00007046-proteinTCONS_00007046-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:646087..650053 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
CDAcytidine deaminase Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.93	10.36	8.6	7.74	0.87	0.31	0.63	0.86	0.05	0.36	0.04	0.25	0.11	0.32	0.1	0.12	0.27	0.15	0.17	0.18	0.61	0.41	1.17	1.07	0.15	0.12	1.08	1.01	0.68	0.95