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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96501_cuf4 >transcript:BL96501_cuf4-protein ID=transcript:BL96501_cuf4-protein|Name=transcript:BL96501_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=197bp
MEAPGPVEILREACHATSGKAILHWQPKTKGAVDSYTITCLIKTLSWTEE
IAKVTCPQPYQIFTDLRPSTKYIFQICANNRCGPSPAEVVELLTKPPLPL
VLQMGHVTNTAIQIKWFDYNLGDLKIIYYLLSYRLAVSSYYKVQANEEWA
EISNIMGLEYILDGLHSRSRYDIKVTALYQAGTSVTSEVFQYWTRGM Run BLAST on NCBI mRNA from alignment at Sc0000017:3784302..3790118- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96501_cuf4 ID=transcript:BL96501_cuf4|Name=transcript:BL96501_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=5817bp|location=Sequence derived from alignment at Sc0000017:3784302..3790118- (Branchiostoma lanceolatum)
GAGAAGTTGAACATGTTCTGCTGTTGTGTGTTTTGTAGGTTCTGACCTGT
CCTGACCATGAGGATGAGAAGTTGAACATGTTCTGCTGTTGTGTGTTTTG
TAGGTTCTGACCTGTCCTGACCATGAGGATGAGAAGTTGAACATGTTCTG
CTGTTGTGTGTTTTGTAGGTTCTGACCTGTCCTGACCATGAGGATGAGAA
GTTGAACATGTTCTGCTGTTGTGTGTTTTGTAGGTTCTGACCTGTCCTGA
CCATGAGGATGAGAAGTTGAACATGTTCTGCTGTTGTGTGTTTTGTAGGT
TCTGACATGTCCTGACCATGAGGATGAGAAGTTGAACATGTTCTGCTGTT
GTGTGTTTTGTAGGTTCTGACATGTCCTGACCATGAGGATGAGAAGTTGA
ACATGTTCTGCTGTTGTGTGTTTTGTAGGTTCTGACATGTCCTGACCATG
AGGATGAGAAGTTGAACATGTTCTGCTGTTGTGTGTTTTGTAGGTTCTGA
CATGTCCTGACCATGAGGATGAGAAGTTGAACATGTTCTGTTGTGTGGAT
GAGATGCCCATCTGTGCCCTGTGTAAACTGGTGGGAAAACACAGCGAACA
CAAGGTGGCAGCACTCGCACAGATGTACAGGGAGAAAAAGGTAAACTTTT
ATACTGAATACCTCTTTTAATGAATAAGGTCTGTGTGGAATGTGAATTTT
TTTCAACACAAAAAGTGCAGACTTCTAAGCACCTTTGTAGTAAGGGATTG
CATTCGTTATGTCGGATGGTGATATAAAGTCAGTGGCCCAGTGTATGGGG
AAGCTTCAGGCATCAGCCTGAGGCAACAAACGTCTGCTCTTAAAAGAACC
CAACACACTTATCGAGAAGAGTATAGGTGACCCGAACGCAAGCCACAGCA
AAGCAGCATTGCACACCACTAGCTACTAGTACTTGAAAAAGTGTCATGCT
TTTAAGATGACTGCTTTAATACCTTACCTTTGACCACATTTGAGTCATAT
GTTCAAAAGGCCTCATGACCAAAGTTGTTGGTCAGTCAAGTTGAGGAAGG
CTTGAACTATTTTGTCAGTTTGCATTTTCCGATGAAAAACAATAATCAAC
TTCTGTTGTCAACATTTCTTCCTAACATACCTTAATTAATGTAAACATTT
ACTTCTTGTGACAGCGTGGAATAAAGTTTATAATCACCATGCCTTGATCA
TAGATGTTTTGTTTCACCACAGGAGTCAGTGGCAAACCGTGTGTCCAGGC
TGGATCAAGAGTTAAAAGAACTTGGAGTATTTGTGGACAAAGTGAAGCAG
ACCATCGCAGAACTAGAGGTTAGTAGTTAAATCAAGGAATAGACTTGGAC
TTTTGAGAGACTCCATGGGTGAAGAAATCATTGTTAAATGGCAAAAGTTA
TGAACAAAATTGTTAGTTTTGAGAAGTTAAGTTTTGAGAACAAGGAACTA
TAGCCATTTTCATAAACTGTTCAAAAGTATAAGCCAGCTTCTTAACAATT
TTTCTCTCTTGAAAATTCTTTTCAACACATACATAAAATGTATTTTCCTC
TAATAATCTAGATGGGTGGGCCTTATGACAGTAGGGTGATATTTAAGTAG
AATTTAGCAACATTTTTGTTTCCAAATGCAGAATGTTACCTTCCCCATTC
CATAAGTGCAAATACAAGTCATACAAAGACATTTCTTCTGTCCTAAAGAC
AAACAGTGAGGGCCTGAAGTCTAAGTTGTCGTCAGCAATAGAGGAGCTGT
GTGGAACCTTACAGAACAGGAGAGATGCCATGCTGAGGGAAGTGGAGCAG
GAAAAGGAAGTACAGTTGGAGGTAAGGACATTTTGTTTGTTTGTGTCTTG
CATAACGAGTGAACCACAGGCTTTTAGCTAGGCATGCGTCCAAGCGTCTT
TTGGATGCATGATACTAAAATAGCAAGAAAATCGGACAACCTCTTTTTCA
GCTGGACCCCCTGTTTCCCTGGTAATTACATACACATGTTGCTGTGTTAC
AGTGTTACTGTAGCTTTTTCTAGTCCTACCAGACACTGGGACAGCATGAA
AACTGATTGACATGCAAAGCTACCAGGAAATTGTTAATCCATAGAGCCCA
TTGGGAAGCAGCAGTTTTTAGTGATTAAAATGATCTGCTAAAAGTATGAT
AAGACTATAGAACACACCTAACCCCGAACCACAGCACCCCCCCCCCCCTT
TTGGACCCCTTGTCTATAAATCCTAGCTAAAAGCCTGGTGAACCACCTCA
TTGAATACCACATCAGTCCTGTAGCAAGTACATTGTGCTGTAGTTGCATA
AGAAACAGATGAAGACATTGCTCAACTCTTATTAAAGTATGATGGCTTCT
TAAATATGCTGAAAATGGGGTGACTTTGAAGATTAGCTTGCTTGCCTACT
TAGAGTACCATTCAAAATGGCTGGGATTTGAACCCGAAACCTCTGTCAAA
AATGTTGGCATTTTTTTTTTCTTTTTTAATATATATATTTTTTCAATGGA
AATGCAAAACAACAAAATTACAAAATTACAATTTCATTAAATCACAAATT
GCAGCAAAATGCTGTTAAATGCCCTGAGATATTCACTGCACCATGGTTGG
AGAATGTAGTTACATGTAGTTTACTGACCTTTACTTACCTGTCTCTCCTG
TCCTATCTCAGCTCCTCCAGGTAGAGCTGGTCACCCATGAGGACCAGGTG
AAGAAGATGGACGCCCTGATGATGTATGCTAATGAGGCACTCAAGGAGGA
GGACCATGCCAGCTTTCTACAGGTACACAACTAGCTGAAGAATAGCCTGA
GTGCCATCGGATTACTACCATGGCTCCTACACTTGCGCCTTTTTCAGGAT
AGCGAGTGTAGGGGCCCCAGTAGTAGTCAGATGGCACCCAGGCTAGGTGA
AAATGAATAAGCTAGATGTTTTATATTGTCATTTATATCTTCATATCTCC
CCTGAGGACACAAAAGCTAGATGTCTTTCAAATAATCACTCCTGTTGGGT
ACAAAAATAAAAAAAGGAAACTTTAGTCTATTAACTAAAAACTAACCACT
ATCTTCTCTTTTCTTCCAGAGTGTGAGAGAGGTGGATGGAAGGTATGTGT
CCACTTAATTTCATTTGTTGACCAACACTAATGTTCACATATCAGATAAA
TAATTCCAAATTTTTGATACTCTCTGACCAAAAGTCTACCTCGTCTAATA
GAATTGAATTAATAAAAGGGGTTGAGCAAAATATCTTTGAATTATCAAAA
AGTAATGTATTTTGCACTCAACTTAATAAAATGTCCTTCCAAAAATTCTG
TTATATAATGGGCTACGGCCATGAAAGCTGAGACTAATATCATTAAAGAG
TACATAGTTAAAAGTACACACCCTGTTATTGTTGCAAAGAATTGGGCAGT
CTCTCTCGGCCATCCCGGAGCGAGCCACCCAGGCCTCCATCCTGTTTGAC
TCCTTCCTCCTCAACCTGGAGGATATCAAACAACACGTCTCCCAGCTGGG
CTTCCTGGCAGGTACAGGACACAAGGCTGCAGTTTGGGGAGCAACCGCTA
GGGGGTGTTCATAGGACGTTGGTTCCGCAGTGGGGCAAATAAAGGGACTG
ATAAGCCATTGCCATACCTTTGGGACATGTCACCTTAGAACTGCTCAGTT
GTAAAGTTATGTTTCAATTGAGGCATAGTGCTAAGCTGCCTCTTCCCTGC
AGTTCTACAAAGGATCAAAAGGTGGCGCTTGTGGACATGGCAGGTGGCAG
TGGTGCTGAAATGCCTTCATCTGAATGTGTTTTCTTCTGCTGTGCAGATA
ATGTGTTTATGATGCCACCAAACTATAAAACACGCTTTTCAATGGTTCAA
TAATGTTCAAAAGGTTTCTTACTAAGATCAGTGCTATGACTTCCTACCCT
GTTCCTTTTTGACAGTATGCACTAATTGTGCTGTTTTTTTTACCAGCCCC
TGGACCAGTAGAGATCCTGAGAGAAGCCTGCCATGCCACCAGTGGAAAGG
CTATTCTACACTGGCAGCCAAAGACTAAAGGTGCCGTCGGTAAGTACAGG
CATAACTCAAGTTACAGATATGCAAATATACCAGAGACAACTTTCTGTGG
CACATGTAACATCTACTAACATAATTCCACCAGGCTACATAGTTTCACCA
CCTTAAAAAGATACATCCAAACAGATTTCCAACCCAACGTCCCCCAGTAT
AATACACTCCTGTATATCTTAGCTGTGCATACCTGGGGGGTGCTGCACTA
TAGAGATCTCTCAAACCCACTGTTTTTCAAAGTGGCTCAGGGGGCTATCT
TACTCGTAAAGCAGTTGCTAGAATGACACTTAGGAAAAGATGAGCAGGGC
AATATCCTGCATTTGCTGGCAAATCTTAGCTTTTTAGTTTGATATCTTTT
GCATGAAATATTTCTACTTTTGATACAGACAGCTACACGATCACCTGCCT
TATCAAAACGCTGTCCTGGACAGAGGAGATAGCGAAGGTGACCTGTCCGC
AGCCGTACCAGATCTTCACCGACCTGCGACCCAGCACGAAGTACATCTTC
CAGATCTGTGCTAACAACAGGTGTGGGCCCTCTCCCGCAGAAGTTGTGGA
ACTCCTCACCAAACGTAAGGCACTGTATTTTAGATACTTTAGTTAGTGCA
TTCTCCTATGCATAGCCTCACCCACGGCCTATACAATATACCTTGGAAAG
GTTCTGCTAGACTGACCACTGTGGGCAAGGCCTCTACTAGTTTTCATCCA
ATCAGAGAGTTGGCTTTACCAACAAAAAACATTTACTAATAGGTGATTCT
CTGATTGGCTGACAGCTGGTTAGAGGCCATGCCCACAAAAATGGAGACCT
CAACCTCACGGCATAACACACCAGGTTATACTGAAGAGTACAAGCTGCAT
ATCCGGACAGATTTATTGTGCAAAAGAATAGGTCTGATAGACATTTTTGC
TACTTTTGATAAAGACATTTACTTGGACAGTATTGTCAAAACTCTGCCTT
TTCTTTTTAACAAAATTGATGTTTTTTGTCTAACATGATATTTATCTTCC
CAGCCCCCCTCCCCCTTGTTCTACAGATGGGTCATGTGACCAACACCGCC
ATTCAAATCAAGTGGTTTGACTACAACCTGGGTGACCTGAAGATCATCTA
TTACCTGCTCTCCTATAGGCTGGCTGTCAGCTCCTACTACAAGGTCCAGG
CCAATGAGGAGTGGGCAGAGATTTCAAACATCATGGGGCTTGAGTATATA
TTAGATGGTCTCCACAGTAGGAGTCGGTATGATATTAAAGTCACTGCACT
GTACCAGGCAGGTACTAGTGTGACCAGTGAGGTTTTCCAGTACTGGACAA
GAGGGATGTAAGACAAGACCGTAATGTGAAGAGCAGATTAAGAAAGTGAT
ACCTTGTTGGCTAAAAAATATCCTTGTAGCATCTTTGGTACCATGTGGTC
AGGGTTTAAAACCATGATGGGGATGGGGATATTTCTTTGATTATCGCATG
CAAAACTGGATGCTGAATTTGCTTGTACTCTTAAGTTCAAAAGGAAGGTG
CTAGAGGGGGTTGCTAAGGCCTAGGGGAAAAGATGTTGTGTTTCCGGTTA
GCCGACCGATCCTAGTAAAAACCCTGCTGACTCTAGCCTTTTTTTTTGGT
CAACTGCTGGTAAGGGATATGAAATATTGGATCTGAGTGGAAAAATTAAA
AGTAGAATCCAAGTTAGTAGTCATGCAAATTTTCTTACAGACTTCCTGTA
TTTCACACTCTCTAGATAGATTAAGGCTTCTAACAGTTGATGTAGGAATA
TGTAGTAAACATTGTGC Coding sequence (CDS) from alignment at Sc0000017:3784302..3790118- >transcript:BL96501_cuf4 ID=transcript:BL96501_cuf4|Name=transcript:BL96501_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2376bp|location=Sequence derived from alignment at Sc0000017:3784302..3790118- (Branchiostoma lanceolatum)
ATGGAAGCCCCTGGACCAGTAGAGATCCTGAGAGAAGCCTGCCATGCCAC
CAGTGGAAAGGCTATTCTACACTGGCAGCCAAAGACTAAAGGTGCCGTCG
ACAGCTACACGATCACCTGCCTTATCAAAACGCTGTCCTGGACAGAGGAG
ATAGCGAAGGTGACCTGTCCGCAGCCGTACCAGATCTTCACCGACCTGCG
ACCCAGCACGAAGTACATCTTCCAGATCTGTGCTAACAACAGGTGTGGGC
CCTCTCCCGCAGAAGTTGTGGAACTCCTCACCAAACCCCCCCTCCCCCTT
GTTCTACAGATGGGTCATGTGACCAACACCGCCATTCAAATCAAGTGGTT
TGACTACAACCTGGGTGACCTGAAGATCATCTATTACCTGCTCTCCTATA
GGCTGGCTGTCAGCTCCTACTACAAGGTCCAGGCCAATGAGGAGTGGGCA
GAGATTTCAAACATCATGGGGCTTGAGTATATATTAGATGGTCTCCACAG
TAGGAGTCGGTATGATATTAAAGTCACTGCACTGTACCAGGCAGGTACTA
GTGTGACCAGTGAGGTTTTCCAGTACTGGACAAGAGGGATGTAAATGGAA
GCCCCTGGACCAGTAGAGATCCTGAGAGAAGCCTGCCATGCCACCAGTGG
AAAGGCTATTCTACACTGGCAGCCAAAGACTAAAGGTGCCGTCGACAGCT
ACACGATCACCTGCCTTATCAAAACGCTGTCCTGGACAGAGGAGATAGCG
AAGGTGACCTGTCCGCAGCCGTACCAGATCTTCACCGACCTGCGACCCAG
CACGAAGTACATCTTCCAGATCTGTGCTAACAACAGGTGTGGGCCCTCTC
CCGCAGAAGTTGTGGAACTCCTCACCAAACCCCCCCTCCCCCTTGTTCTA
CAGATGGGTCATGTGACCAACACCGCCATTCAAATCAAGTGGTTTGACTA
CAACCTGGGTGACCTGAAGATCATCTATTACCTGCTCTCCTATAGGCTGG
CTGTCAGCTCCTACTACAAGGTCCAGGCCAATGAGGAGTGGGCAGAGATT
TCAAACATCATGGGGCTTGAGTATATATTAGATGGTCTCCACAGTAGGAG
TCGGTATGATATTAAAGTCACTGCACTGTACCAGGCAGGTACTAGTGTGA
CCAGTGAGGTTTTCCAGTACTGGACAAGAGGGATGTAAATGGAAGCCCCT
GGACCAGTAGAGATCCTGAGAGAAGCCTGCCATGCCACCAGTGGAAAGGC
TATTCTACACTGGCAGCCAAAGACTAAAGGTGCCGTCGACAGCTACACGA
TCACCTGCCTTATCAAAACGCTGTCCTGGACAGAGGAGATAGCGAAGGTG
ACCTGTCCGCAGCCGTACCAGATCTTCACCGACCTGCGACCCAGCACGAA
GTACATCTTCCAGATCTGTGCTAACAACAGGTGTGGGCCCTCTCCCGCAG
AAGTTGTGGAACTCCTCACCAAACCCCCCCTCCCCCTTGTTCTACAGATG
GGTCATGTGACCAACACCGCCATTCAAATCAAGTGGTTTGACTACAACCT
GGGTGACCTGAAGATCATCTATTACCTGCTCTCCTATAGGCTGGCTGTCA
GCTCCTACTACAAGGTCCAGGCCAATGAGGAGTGGGCAGAGATTTCAAAC
ATCATGGGGCTTGAGTATATATTAGATGGTCTCCACAGTAGGAGTCGGTA
TGATATTAAAGTCACTGCACTGTACCAGGCAGGTACTAGTGTGACCAGTG
AGGTTTTCCAGTACTGGACAAGAGGGATGTAAATGGAAGCCCCTGGACCA
GTAGAGATCCTGAGAGAAGCCTGCCATGCCACCAGTGGAAAGGCTATTCT
ACACTGGCAGCCAAAGACTAAAGGTGCCGTCGACAGCTACACGATCACCT
GCCTTATCAAAACGCTGTCCTGGACAGAGGAGATAGCGAAGGTGACCTGT
CCGCAGCCGTACCAGATCTTCACCGACCTGCGACCCAGCACGAAGTACAT
CTTCCAGATCTGTGCTAACAACAGGTGTGGGCCCTCTCCCGCAGAAGTTG
TGGAACTCCTCACCAAACCCCCCCTCCCCCTTGTTCTACAGATGGGTCAT
GTGACCAACACCGCCATTCAAATCAAGTGGTTTGACTACAACCTGGGTGA
CCTGAAGATCATCTATTACCTGCTCTCCTATAGGCTGGCTGTCAGCTCCT
ACTACAAGGTCCAGGCCAATGAGGAGTGGGCAGAGATTTCAAACATCATG
GGGCTTGAGTATATATTAGATGGTCTCCACAGTAGGAGTCGGTATGATAT
TAAAGTCACTGCACTGTACCAGGCAGGTACTAGTGTGACCAGTGAGGTTT
TCCAGTACTGGACAAGAGGGATGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000017 | genome | Sc0000017:3784302..3790118 - |
Properties
| Property Name | Value |
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| Transcript id | BL96501_cuf4 |
| Biotype | protein_coding |
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