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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96353_cuf3 >transcript:BL96353_cuf3-protein ID=transcript:BL96353_cuf3-protein|Name=transcript:BL96353_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=170bp
AVAAYGAAHFGQGSGPIYLNNLDCSGNEMSLSDCPQLSGGTTTCTHADDA
GVECKDLDDCQPNPCANGGTCLDRVDDFVCVCRPPYEGKDCNIDTSDPCA
TDPCEHGGVCSADGDKFTCSCQLGWNGTTCDTYALDPCDSGPCQHGGLCF
ASEDKFACSCQPGWNGTTCE Run BLAST on NCBI mRNA from alignment at Sc0000092:245641..248282- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96353_cuf3 ID=transcript:BL96353_cuf3|Name=transcript:BL96353_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2642bp|location=Sequence derived from alignment at Sc0000092:245641..248282- (Branchiostoma lanceolatum)
GTGCTGTAGCAGCCTATGGCGCCGCACACTTCGGACAGGGAAGCGGACCT
ATCTACCTCAACAACCTGGACTGCTCTGGGAACGAGATGTCCCTCTCGGA
CTGTCCGCAGCTCTCTGGCGGGACGACAACCTGCACACACGCCGATGACG
CCGGGGTTGAGTGTAAAGGTGGGCCAGTCTTGTTTATCTTACGACCATAG
TAAACCAAACAGAATGTCCTTTACTTTTGCCGTGTCAACAATCTTCTTTC
TTCTGTACACTTTCTATTGCAAATATCCAATTTGATATGATATCAATCGA
ATGACATCGCCCGGTGGCTATTTCAAACATTGCTGGGTGGGAGGGGTCAT
CAAAAAGATGATTGGAAACATATCTATAGTTGCATCTACAAGAGGAAGCT
TTGATTTTTTATGACTTTTCAAAAATCATCCTTTTGAAATTATCCTATCG
CGCTTTTGGTCATTAAACACGTTCGATTTAACAGCTCATAAACAATGGTT
TATTCTTTGGCTTGTTTCCTCAGATCTTGATGACTGTCAGCCGAATCCTT
GTGCGAACGGTGGCACCTGTCTGGACCGTGTGGACGACTTCGTCTGCGTT
TGCCGCCCTCCGTATGAAGGGAAAGACTGCAACATCGGTAAGTCACAACG
CCAATTTTTTGTCTTCAACGCAAAAAACATTCCATGGTGACTTTCACAAG
AAACATACACTGTGGGATATGCAAAGTTTGTACAGATAACCTGCCTCCAC
TCTTGAGTCCGCTCCATTACCTTACTAAGGGCCCTGTCACACTTGTGCGT
ATATTCAAGTGCGCGTGAGTTGTGCATTCACATTTTTTTTGGTTTAAGTA
AGGTTTGCGGGGAAGAAGTTGCTTTCTACTTTGACCCACCATTGTGCACC
CTAGTGATAGAAACTGAGAAATCAGTTATTCGGCTGCAAACTTAACCTAA
ACCAAAAACATGTTAATACGCAACTCATGCAGACTTGTATATACGCATAA
GTGCGACAAGGGCTTAAGTAAGGTTTGCGGGGAAAAAGTTGTTTTCTACT
TTGACCCACCGTTGTGCAGCCTAGTGATCGGACCTAAGAAATCACTTATT
CGGCTGCAAACTTAACCTAAACCAAATATATATTGATACGCAACTCATGC
GGACTTGTATATACGCACAAGTGTGACAGGGGCTTAAGTAAGGTTTGCGG
GGAAAAGTTGTTTTCTACTTTGACCCACCGTTGTGCAGCCTAGTGATCGG
ACCTAAGAAATCACTTATTCGGCTGCAAACTTAACCTAAACCAAATATAT
ATTGATACGCAACTCATGCGGACTTGTATATACGCACAAGTGTGACAGGG
GCTTAAGTAAGGTTTGCGGGGAAAAGTTGTTTTCTACTTTGACCCACCGT
TGTGCAGCCTAGTGATCGGACCTAAGAAATCACTTATTCGGCTGCAAACT
TAACCTAAACCAAATATATATTGATACGCAACTCATGCGGACTTGTACAT
ACGCACAAGTGTGACAGGGGCTTAAGTAAGGTTTGCGGGAAAAAAGTTGT
TTTCTACTTTGACCCACCATTGTGCAGCCTAGTGATCGAACCTAAGAAAT
CACAGATATAGTTGGCATCCGGTCTATCTTCCCTTCAGTATGTGCTCGCT
TGTTGTTTTGCCTCACTCGTTTTGACACATAGCTTGCTTTCACCGCACAA
CATTCATACTATTTACCTGTATGTACTAGTACTACATACAGGATTCATCC
TCCCAGCAGACCCGATATATTCGGTTCGTTACCTCCCATAGCGGCCCTGC
CCTTCCGAGCCCCTGAACACACTTCTGGCGCCGTCGTCACCAAAACTACT
TCAGCCAATCAGAGGGCTTGCTAAAGCTCATCTCGAGCAAAGCCGCAAAG
GACGCTGGGAAGCTATCAGCCAATCAGCTTACGTCTTACATCGCTACTTT
GGGTTCAGAACAAGATAACGAACCTTTGTGCCAAATAAGGCTAGCTCATT
AATTATCTATGAGCAGCTGTCAGTGACGCCCCCAGAAGCCAAAATCTCCG
TTCAAAAGATCAGGGCTGAGACCGGGAGGGTTTGCCGAGCATTTCCCGAG
CGGGTTTCAGGGCTGATAAAGGAGGGTGTACAGGATTATGTTGCTCGATG
TCCAGATCTTGCACAAGTAACCGTTACCTACATTACCTACAGATACCAGC
GACCCTTGCGCGACTGATCCTTGTGAACACGGAGGCGTATGCTCAGCAGA
TGGCGACAAATTTACCTGCTCATGTCAGCTCGGATGGAACGGTACAACGT
GCGACACGTATGGTACGTTCTCTCTTCTTCATTGACTGGCAGGTAACGTT
AGCCCCCATAGCTAAAAAGGCATGTATAGTTGTAAATGCGTGTTTGGCGT
TCAATCAATTCTATGTTCTTTCAGTGGAACGATTTTTTGCTCCCTTTTCT
CCAATGTCCTGTATAACCTGCTCTGTCATACCCAGTTGCATTATATAGTG
AATATAACTCTCTGATGTTACATTGTTCAGCTCTGGACCCATGTGACAGC
GGACCCTGTCAACACGGAGGCCTGTGTTTTGCCAGCGAAGATAAATTTGC
CTGCTCATGTCAGCCTGGATGGAACGGTACCACTTGCGAAAC Coding sequence (CDS) from alignment at Sc0000092:245641..248282- >transcript:BL96353_cuf3 ID=transcript:BL96353_cuf3|Name=transcript:BL96353_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2040bp|location=Sequence derived from alignment at Sc0000092:245641..248282- (Branchiostoma lanceolatum)
GCTGTAGCAGCCTATGGCGCCGCACACTTCGGACAGGGAAGCGGACCTAT
CTACCTCAACAACCTGGACTGCTCTGGGAACGAGATGTCCCTCTCGGACT
GTCCGCAGCTCTCTGGCGGGACGACAACCTGCACACACGCCGATGACGCC
GGGGTTGAGTGTAAAGATCTTGATGACTGTCAGCCGAATCCTTGTGCGAA
CGGTGGCACCTGTCTGGACCGTGTGGACGACTTCGTCTGCGTTTGCCGCC
CTCCGTATGAAGGGAAAGACTGCAACATCGATACCAGCGACCCTTGCGCG
ACTGATCCTTGTGAACACGGAGGCGTATGCTCAGCAGATGGCGACAAATT
TACCTGCTCATGTCAGCTCGGATGGAACGGTACAACGTGCGACACGTATG
CTCTGGACCCATGTGACAGCGGACCCTGTCAACACGGAGGCCTGTGTTTT
GCCAGCGAAGATAAATTTGCCTGCTCATGTCAGCCTGGATGGAACGGTAC
CACTTGCGAAGCTGTAGCAGCCTATGGCGCCGCACACTTCGGACAGGGAA
GCGGACCTATCTACCTCAACAACCTGGACTGCTCTGGGAACGAGATGTCC
CTCTCGGACTGTCCGCAGCTCTCTGGCGGGACGACAACCTGCACACACGC
CGATGACGCCGGGGTTGAGTGTAAAGATCTTGATGACTGTCAGCCGAATC
CTTGTGCGAACGGTGGCACCTGTCTGGACCGTGTGGACGACTTCGTCTGC
GTTTGCCGCCCTCCGTATGAAGGGAAAGACTGCAACATCGATACCAGCGA
CCCTTGCGCGACTGATCCTTGTGAACACGGAGGCGTATGCTCAGCAGATG
GCGACAAATTTACCTGCTCATGTCAGCTCGGATGGAACGGTACAACGTGC
GACACGTATGCTCTGGACCCATGTGACAGCGGACCCTGTCAACACGGAGG
CCTGTGTTTTGCCAGCGAAGATAAATTTGCCTGCTCATGTCAGCCTGGAT
GGAACGGTACCACTTGCGAAGCTGTAGCAGCCTATGGCGCCGCACACTTC
GGACAGGGAAGCGGACCTATCTACCTCAACAACCTGGACTGCTCTGGGAA
CGAGATGTCCCTCTCGGACTGTCCGCAGCTCTCTGGCGGGACGACAACCT
GCACACACGCCGATGACGCCGGGGTTGAGTGTAAAGATCTTGATGACTGT
CAGCCGAATCCTTGTGCGAACGGTGGCACCTGTCTGGACCGTGTGGACGA
CTTCGTCTGCGTTTGCCGCCCTCCGTATGAAGGGAAAGACTGCAACATCG
ATACCAGCGACCCTTGCGCGACTGATCCTTGTGAACACGGAGGCGTATGC
TCAGCAGATGGCGACAAATTTACCTGCTCATGTCAGCTCGGATGGAACGG
TACAACGTGCGACACGTATGCTCTGGACCCATGTGACAGCGGACCCTGTC
AACACGGAGGCCTGTGTTTTGCCAGCGAAGATAAATTTGCCTGCTCATGT
CAGCCTGGATGGAACGGTACCACTTGCGAAGCTGTAGCAGCCTATGGCGC
CGCACACTTCGGACAGGGAAGCGGACCTATCTACCTCAACAACCTGGACT
GCTCTGGGAACGAGATGTCCCTCTCGGACTGTCCGCAGCTCTCTGGCGGG
ACGACAACCTGCACACACGCCGATGACGCCGGGGTTGAGTGTAAAGATCT
TGATGACTGTCAGCCGAATCCTTGTGCGAACGGTGGCACCTGTCTGGACC
GTGTGGACGACTTCGTCTGCGTTTGCCGCCCTCCGTATGAAGGGAAAGAC
TGCAACATCGATACCAGCGACCCTTGCGCGACTGATCCTTGTGAACACGG
AGGCGTATGCTCAGCAGATGGCGACAAATTTACCTGCTCATGTCAGCTCG
GATGGAACGGTACAACGTGCGACACGTATGCTCTGGACCCATGTGACAGC
GGACCCTGTCAACACGGAGGCCTGTGTTTTGCCAGCGAAGATAAATTTGC
CTGCTCATGTCAGCCTGGATGGAACGGTACCACTTGCGAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000092 | genome | Sc0000092:245641..248282 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96353_cuf3 |
| Biotype | protein_coding |
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