transcript:BL95969_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95969_evm1
Unique Nametranscript:BL95969_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95969_evm1

>transcript:BL95969_evm1-protein ID=transcript:BL95969_evm1-protein|Name=transcript:BL95969_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=246bp
MAQVGYPGYPGYNQFYGVSGHSNECDSDSDCSGSYRCQFAPVSGKSFCTP
SVYTYPYSSYSGYGGYPYDYYGYYGGYGGYPYYNYYDYYGSYPYNYGSYY
PYNYGYYGSYYPYYNYGSYYPYYGHPYVGYTGEGTAEPRQGPPPTLTPEQ
MEEMKAKHEEMRKKAEEFWRNREGKEQLKPGESLEDHVVPMGGQWFPPPP
PPSQEQGEQGNQGNQEERRRWMPPRVPRGRRPPTEEQVVEDGIAVD
Run BLAST on NCBI

mRNA from alignment at Sc0000246:350848..352962+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95969_evm1 ID=transcript:BL95969_evm1|Name=transcript:BL95969_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2115bp|location=Sequence derived from alignment at Sc0000246:350848..352962+ (Branchiostoma lanceolatum)
ATGGTATGGTAAAATCTTTATGGTAAATAATTGGTGCCCAAAAAATGAAT
TTCGTCAAATGGAGAAGCCATTCGAGTGCAACTTTGAGCTTGAACCAGCG
ATAATTGTGATGAATAAGTTTATTCCAAAGATCTGAAATCTAATTGCTAG
TGTCCTAATTACACTGTAGCGTTTTCTCAACACATGTACTAAAATATACA
GCGCAAACGCATTATCCAAGCGAAGTTGATGTAGATTATCACGAAGATTG
TCGAATGCAGAAAATACTTGGCTATAGGCACTCAGGGAAAGATTGAAATG
TTACAGACATGAAGTTGCAACTATGGAAACATTGGTTGAGTGACTGAGCC
CCATTCTCTTCATATATATACAACCTGTATCTTACCACAGGTAAACGTTG
TGGAGTCCAGTCATCACCCCCTTCTCCTCAATGTGTGGGTCTGCGATGTC
CAATTATCGTCCAACAGCGCCAGTTGTTGGACGCAATATTTTGACCCCTG
GTATTTTGTGACTTTTGTCCCTGTAGGCGCAGGTGGGCTATCCTGGTTAT
CCGGGCTACAACCAGTTCTACGGGGTGTCCGGCCACTCCAACGAATGCGA
CAGTGACAGCGACTGCAGCGGCTCGTACCGGTGCCAATTCGCGCCCGTCA
GCGGCAAGTCTTTTTGCACGCCCAGCGTGTACACATACCCATACAGCAGC
TACTCCGGTTATGGTGGATACCCATATGACGTACGTTTTTATACCTATTC
ACCTCTAAATAAGCTTAACGATTGTTGAAATCTGTCCATAAGACAAGCTT
ATATGATGTTTGAAACAGGCAACAGTAATAGACATGACATAAACGGTAAT
GCGCGTGATATTTTGGCTAGCAATTTTTTTCCTCTCATTCTTTGATTCTA
TTATTTTGTAATGTGTTGTGTTGGAATTTGATGTTACGTATTTGGAAACC
TTTCTGTTGAAATAGCCATTTCTTACTTTGTGTTTCTTTTATTCAACGAA
GTCTGCTTTTGTCTTTACACAGTACTACGGATACTATGGAGGATATGGTG
GATATCCCTACTACAACTACTACGACTACTACGGATCCTACCCATACAAT
TATGGTTCCTACTACCCCTATAACTACGGATACTACGGCTCTTACTACCC
CTACTACAACTACGGATCTTACTACCCATACTATGGACACCCTTACGTTG
GAGTGAGTATCTTGACTTCAATCTATTCTAAACTAAGAAAACTGTAAGAA
AAATCAATTCTGTATTCAAATGGTAGGTATAGATGTTGAAAATGCAAATT
TTCCCGGTTGCACCCCAGTACACCGGCGAGGGCACGGCAGAGCCACGACA
GGGCCCTCCCCCGACCCTCACACCCGAGCAGATGGAAGAGATGAAGGCCA
AACACGAGGAGATGAGGAAGAAGGCAGAAGAGTTCTGGAGGAATAGGGAA
GGCAAGGAGCAGCTGAAACCCGGAGAGAGCCTTGAGGACCACGTTGTTCC
GATGGGAGGCCAATGGTTCCCTCCACCACCACCCCCATCTCAGGAGCAGG
GAGAGCAGGGTAACCAAGGCAACCAGGAGGAGAGGAGGAGGTGGATGCCT
CCCCGCGTGCCCAGGGGACGGAGGCCTCCTACCGAGGAGCAAGGTAACAT
ATAGCTTCTGTTGTTTGATTTAATCGTACATACAGAATCAGCAAGCGTAT
AAAAGAGACAAAGCTATAATCGGTTGCGGCGATAACTAATAGAGCAGCCT
TTAAAACCTATGAAAGAGCGTGAGATACAATAATCTATGTCATACCCGGG
CCTGATACGGGTGGTCCGGACCGTGTGATAACTATCCGTATCACATAGGG
TTCGTGTGTTGTATCACACGGGCTTCCATAGAATATTTCGAATGTATTTC
GAGCGCGCCGGTTGCGCCGCAGCCGAAAATTTGAATACCGGATTCTGAGG
TTGGAATCAATGTTGTCACAGTTTTGTGTTTGAGGACACAAAACTCTCTC
AACTTTTGGCGCATTCCGCATTAAAATGTGTGTTTTCTCGGGTGGGTATG
ACATAATAAATTTTTTTTGTTTTTATTTCTATTCAGTCGTGGAAGACGGA
ATCGCAGTGGATTAA

Coding sequence (CDS) from alignment at Sc0000246:350848..352962+

>transcript:BL95969_evm1 ID=transcript:BL95969_evm1|Name=transcript:BL95969_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=3705bp|location=Sequence derived from alignment at Sc0000246:350848..352962+ (Branchiostoma lanceolatum)
ATGGCGCAGGTGGGCTATCCTGGTTATCCGGGCTACAACCAGTTCTACGG
GGTGTCCGGCCACTCCAACGAATGCGACAGTGACAGCGACTGCAGCGGCT
CGTACCGGTGCCAATTCGCGCCCGTCAGCGGCAAGTCTTTTTGCACGCCC
AGCGTGTACACATACCCATACAGCAGCTACTCCGGTTATGGTGGATACCC
ATATGACTACTACGGATACTATGGAGGATATGGTGGATATCCCTACTACA
ACTACTACGACTACTACGGATCCTACCCATACAATTATGGTTCCTACTAC
CCCTATAACTACGGATACTACGGCTCTTACTACCCCTACTACAACTACGG
ATCTTACTACCCATACTATGGACACCCTTACGTTGGATACACCGGCGAGG
GCACGGCAGAGCCACGACAGGGCCCTCCCCCGACCCTCACACCCGAGCAG
ATGGAAGAGATGAAGGCCAAACACGAGGAGATGAGGAAGAAGGCAGAAGA
GTTCTGGAGGAATAGGGAAGGCAAGGAGCAGCTGAAACCCGGAGAGAGCC
TTGAGGACCACGTTGTTCCGATGGGAGGCCAATGGTTCCCTCCACCACCA
CCCCCATCTCAGGAGCAGGGAGAGCAGGGTAACCAAGGCAACCAGGAGGA
GAGGAGGAGGTGGATGCCTCCCCGCGTGCCCAGGGGACGGAGGCCTCCTA
CCGAGGAGCAAGTCGTGGAAGACGGAATCGCAGTGGATTAAATGGCGCAG
GTGGGCTATCCTGGTTATCCGGGCTACAACCAGTTCTACGGGGTGTCCGG
CCACTCCAACGAATGCGACAGTGACAGCGACTGCAGCGGCTCGTACCGGT
GCCAATTCGCGCCCGTCAGCGGCAAGTCTTTTTGCACGCCCAGCGTGTAC
ACATACCCATACAGCAGCTACTCCGGTTATGGTGGATACCCATATGACTA
CTACGGATACTATGGAGGATATGGTGGATATCCCTACTACAACTACTACG
ACTACTACGGATCCTACCCATACAATTATGGTTCCTACTACCCCTATAAC
TACGGATACTACGGCTCTTACTACCCCTACTACAACTACGGATCTTACTA
CCCATACTATGGACACCCTTACGTTGGATACACCGGCGAGGGCACGGCAG
AGCCACGACAGGGCCCTCCCCCGACCCTCACACCCGAGCAGATGGAAGAG
ATGAAGGCCAAACACGAGGAGATGAGGAAGAAGGCAGAAGAGTTCTGGAG
GAATAGGGAAGGCAAGGAGCAGCTGAAACCCGGAGAGAGCCTTGAGGACC
ACGTTGTTCCGATGGGAGGCCAATGGTTCCCTCCACCACCACCCCCATCT
CAGGAGCAGGGAGAGCAGGGTAACCAAGGCAACCAGGAGGAGAGGAGGAG
GTGGATGCCTCCCCGCGTGCCCAGGGGACGGAGGCCTCCTACCGAGGAGC
AAGTCGTGGAAGACGGAATCGCAGTGGATTAAATGGCGCAGGTGGGCTAT
CCTGGTTATCCGGGCTACAACCAGTTCTACGGGGTGTCCGGCCACTCCAA
CGAATGCGACAGTGACAGCGACTGCAGCGGCTCGTACCGGTGCCAATTCG
CGCCCGTCAGCGGCAAGTCTTTTTGCACGCCCAGCGTGTACACATACCCA
TACAGCAGCTACTCCGGTTATGGTGGATACCCATATGACTACTACGGATA
CTATGGAGGATATGGTGGATATCCCTACTACAACTACTACGACTACTACG
GATCCTACCCATACAATTATGGTTCCTACTACCCCTATAACTACGGATAC
TACGGCTCTTACTACCCCTACTACAACTACGGATCTTACTACCCATACTA
TGGACACCCTTACGTTGGATACACCGGCGAGGGCACGGCAGAGCCACGAC
AGGGCCCTCCCCCGACCCTCACACCCGAGCAGATGGAAGAGATGAAGGCC
AAACACGAGGAGATGAGGAAGAAGGCAGAAGAGTTCTGGAGGAATAGGGA
AGGCAAGGAGCAGCTGAAACCCGGAGAGAGCCTTGAGGACCACGTTGTTC
CGATGGGAGGCCAATGGTTCCCTCCACCACCACCCCCATCTCAGGAGCAG
GGAGAGCAGGGTAACCAAGGCAACCAGGAGGAGAGGAGGAGGTGGATGCC
TCCCCGCGTGCCCAGGGGACGGAGGCCTCCTACCGAGGAGCAAGTCGTGG
AAGACGGAATCGCAGTGGATTAAATGGCGCAGGTGGGCTATCCTGGTTAT
CCGGGCTACAACCAGTTCTACGGGGTGTCCGGCCACTCCAACGAATGCGA
CAGTGACAGCGACTGCAGCGGCTCGTACCGGTGCCAATTCGCGCCCGTCA
GCGGCAAGTCTTTTTGCACGCCCAGCGTGTACACATACCCATACAGCAGC
TACTCCGGTTATGGTGGATACCCATATGACTACTACGGATACTATGGAGG
ATATGGTGGATATCCCTACTACAACTACTACGACTACTACGGATCCTACC
CATACAATTATGGTTCCTACTACCCCTATAACTACGGATACTACGGCTCT
TACTACCCCTACTACAACTACGGATCTTACTACCCATACTATGGACACCC
TTACGTTGGATACACCGGCGAGGGCACGGCAGAGCCACGACAGGGCCCTC
CCCCGACCCTCACACCCGAGCAGATGGAAGAGATGAAGGCCAAACACGAG
GAGATGAGGAAGAAGGCAGAAGAGTTCTGGAGGAATAGGGAAGGCAAGGA
GCAGCTGAAACCCGGAGAGAGCCTTGAGGACCACGTTGTTCCGATGGGAG
GCCAATGGTTCCCTCCACCACCACCCCCATCTCAGGAGCAGGGAGAGCAG
GGTAACCAAGGCAACCAGGAGGAGAGGAGGAGGTGGATGCCTCCCCGCGT
GCCCAGGGGACGGAGGCCTCCTACCGAGGAGCAAGTCGTGGAAGACGGAA
TCGCAGTGGATTAAATGGCGCAGGTGGGCTATCCTGGTTATCCGGGCTAC
AACCAGTTCTACGGGGTGTCCGGCCACTCCAACGAATGCGACAGTGACAG
CGACTGCAGCGGCTCGTACCGGTGCCAATTCGCGCCCGTCAGCGGCAAGT
CTTTTTGCACGCCCAGCGTGTACACATACCCATACAGCAGCTACTCCGGT
TATGGTGGATACCCATATGACTACTACGGATACTATGGAGGATATGGTGG
ATATCCCTACTACAACTACTACGACTACTACGGATCCTACCCATACAATT
ATGGTTCCTACTACCCCTATAACTACGGATACTACGGCTCTTACTACCCC
TACTACAACTACGGATCTTACTACCCATACTATGGACACCCTTACGTTGG
ATACACCGGCGAGGGCACGGCAGAGCCACGACAGGGCCCTCCCCCGACCC
TCACACCCGAGCAGATGGAAGAGATGAAGGCCAAACACGAGGAGATGAGG
AAGAAGGCAGAAGAGTTCTGGAGGAATAGGGAAGGCAAGGAGCAGCTGAA
ACCCGGAGAGAGCCTTGAGGACCACGTTGTTCCGATGGGAGGCCAATGGT
TCCCTCCACCACCACCCCCATCTCAGGAGCAGGGAGAGCAGGGTAACCAA
GGCAACCAGGAGGAGAGGAGGAGGTGGATGCCTCCCCGCGTGCCCAGGGG
ACGGAGGCCTCCTACCGAGGAGCAAGTCGTGGAAGACGGAATCGCAGTGG
ATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95969gene:BL95969Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95969_evm1transcript:BL95969_evm1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95969_evm1-E1BL95969_evm1-E1-1564476830-407432Branchiostoma lanceolatumexon
BL95969_evm1-E2BL95969_evm1-E2-1564476830-407434Branchiostoma lanceolatumexon
BL95969_evm1-E3BL95969_evm1-E3-1564476830-407436Branchiostoma lanceolatumexon
BL95969_evm1-E4BL95969_evm1-E4-1564476830-407438Branchiostoma lanceolatumexon
BL95969_evm1-E5BL95969_evm1-E5-1564476830-407440Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000246genomeSc0000246:350848..352962 +
Properties
Property NameValue
Transcript idBL95969_evm1
Biotypeprotein_coding