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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL95885_evm3 >transcript:BL95885_evm3-protein ID=transcript:BL95885_evm3-protein|Name=transcript:BL95885_evm3|organism=Branchiostoma lanceolatum|type=polypeptide|length=327bp
MDGVKAALQSKEVVIAVLTTTAVISAGIAYLRWRRQRNRHYVPVGHVAKI
FMYPVKCCRGLELGEAVLTEQGLQCDGVMDRHLVILYKDRFLDSRTSPRI
VLISPQCVGDGQVRLEAPGMDPLTLSAPTENVIDVSIWDIGGDAVDCGPE
AAAWLEKFFGKPGYKLVMSTPGSKKRQTTEHWRYKRFARPDDKVGFQDQT
ALLLTSEASLDDLNNKLVTPVAMRNFRPNIVVAGSEPFQEDDWLHMRIGQ
VDIRTVLPCNRCLVTTINPETGVKDKAMEPLKTLQSYRLSTKKKYQGLFA
QTPLFGLKCGVDQAGVVRVGDTVYACA Run BLAST on NCBI mRNA from alignment at Sc0000193:333140..336049+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL95885_evm3 ID=transcript:BL95885_evm3|Name=transcript:BL95885_evm3|organism=Branchiostoma lanceolatum|type=mRNA|length=2910bp|location=Sequence derived from alignment at Sc0000193:333140..336049+ (Branchiostoma lanceolatum)
ATGGACGGTGTGAAGGCAGCGCTCCAATCTAAAGAAGTAGTTATCGCTGT
ACTGACTACTACAGCTGTGATCTCTGCCGGGATAGCCTACCTCCGGTGGC
GGAGGCAACGTAACCGGCACTACGTCCCCGTCGGACATGTGGCTAAAATC
TTCATGTACCCGGTAAAGTGTTGCCGCGGTCTGGAGCTGGGGGAGGCCGT
GCTGACCGAACAAGGTTTGCAGTGTGATGGAGTTATGGACAGGTGGGTTT
AGAATGAAGATTGTATGAATAACAAGTCAAACCTATCATGGTTACTTGTA
GACGTGTAACATTGTCTTACGATTGTCACCTGAATGAAGGTGATAAAACG
TGACAAAATGTGACCCTTATTATTAAGACCAAATTCCGCGCCGATCCCAC
CAACATCAGCCAGTTCAGGGAGGTTTACGTAACAAACACAAGGATTGACC
CCTGGCTGACCCGCGGTACGAAGAGCTCCCCTGGGACACTTGGGTTCTAC
TATTATTCAAGCAGAGGTTTCGGTGTGTGTGTGTGTGTGTGTATTATATT
TGTTTTTGCTCCAAATTGCAGCCACTACTACCCCCCGACCAAAAATCTGC
TTGAAGAATAGGTTCTACCACGAGTAGCTGGCGTCCAACATCGGGCGATT
TGCACAACCTTTGGACTGTTTGATCCTTCTTACACTTTGGCTCTCTAGGA
GTAGCCTCCGTTGCAGGCTCTGAACCGGCTTTTTGGGGGGCTAAATAATA
CACTTTTTGCAGCCAGCCCGTAACTATCAGCCGACGCTTACAGGGTTGGC
TGATAGTTACGGGCTGGCTGCAAAAAGTGTATTATTTAGCCCCCCCCCCC
CCAAAAGCCGGTTCAGGGCCTGCACTAGGCGGAGGCTACTCTCTAGTACA
TGTCCATACATCTCCTTCTTTATGCAGACACCTGGTGATTCTTTATAAGG
ATCGTTTCTTGGACTCAAGGACGAGTCCCCGTATCGTCCTGATCTCCCCG
CAGTGTGTTGGAGACGGACAGGTGAGGCTGGAGGCACCTGGGATGGACCC
GCTCACCTTGTCCGCTCCCACGGAAAACGTGATTGACGTCAGGTGAGCCG
GTTGTGGTCACGGTAGTTTACTTTACCGTCTGTCTGCAAATCCTCGTTAC
ATTTGAATTGGCATTTCTCAGTATTGAGAAAAGATAGGAAGCGTGAGAGA
CTGGGGAGAGAAAGAGAGTTGTGACATAGCTTTGAGAAAGACGATTCTGG
AGATTTGTGACGGTAACAACCGTACCAACAAATAAAAACGCATCTTACTC
CTGTGCTCTTTTGCATGTCTGCCAGTATATGGGATATTGGCGGAGACGCT
GTGGACTGCGGCCCGGAGGCTGCCGCCTGGCTGGAGAAGTTCTTCGGGAA
GCCGGGCTACAAGCTGGTCATGTCCACACCGGGAAGTAAGAAGAGACAGA
CGACGGAACACTGGAGGTACAAGCGCTTTGCCAGGCCAGATGACAAGGTA
TGTCCTACATTTCAACTTTTCTCACAGTACTCGAATGAGACATGTAACGT
TATGTACGTCGGGAGGCGCAACCAACAGCGCATCTAGTTGTCCATTGTCG
ACTACCAGTGTTGACTCATCACCCTGTCGATTGAACTTGACATGCAGGTT
CCAATAGCGCAGCATTTGAAATTTTCTTTTTAGCGCTTCACCGCATTTCC
CTCAACAACTTGTCTTATGATAAAAAAACGTGTCCACCCATTTGTGTTCC
AGGTGGGGTTCCAGGACCAAACCGCCTTGCTGCTTACGTCAGAGGCGTCC
CTGGACGACCTGAACAACAAGCTGGTCACTCCTGTAGCCATGCGCAACTT
CCGACCCAACATTGTGGTCGCTGGGAGTGAGCCATTTCAAGAGGTACGAA
TAGAGAAGTAACCTCAGTGGCCCAAAATAGACGACTTTCGGGGTCTACAT
AAAGCTTATGGCTTAGGATGTTGTACATATTCTGCAAAAAAGAGCCCATC
TTATTTAGAAAAAAAAAATGCATCTAGATTTGAAACAAGAGAAAACCCAA
GGGACTCGTAGCTATTTGGCTCCCTATTTCATTCCTCGATCATGACCCCG
CCCCCTTCACGTACTTTTGTGTTGAAACATAGTGTGTTTATCTTCTGTAG
GCTCTATATAATTCCATTGACTAGTGCACAATCACTATATCTTACAGGAC
GACTGGCTGCATATGCGAATCGGCCAAGTGGACATTCGGACAGTTTTACC
CTGCAACAGGTAGGAACGCGACAGCGGTACACAGTGAATTGATATAGTTA
CCGAGATGGCGTTTCCCAAAATTTGTTTGATGTTTATTTCTTGACGAGGT
TTTGGTCTAGATATATCCACTCTCTGTCGTCAAGCGCATTTTTTTTTCTA
GTTCCCCACAAAGGTAACCCGTGTACTACTCTTGTTTCCAGGTGTTTAGT
AACAACTATCAACCCCGAGACCGGTGTGAAGGATAAGGCGATGGAACCTC
TCAAGACGCTCCAAAGGTTCGTATGTAACGTTAGCAGAAACAATGCCAGC
CTGGCATATAGACCGATTTGAAGTCCATTCAGCTCCGAGTCTTGTAGTAT
TACTACAAATGTGCGATAAACATTAACTTAAACGGTTAGATCTTTGTAAA
GTTACTAGTAAATGAACGAACGTTAATGCTCACCGTTAGAGCAAGGAAAT
GTCTTACAGTATACGCAAAACTACATCAATATCATGTTTTGTGCAGCTAT
GCAATCACACGTTGTGCTATTTTCCTACCGCAGTTACCGCCTTTCCACGA
AGAAAAAGTATCAGGGCCTGTTCGCGCAGACCCCACTCTTCGGGCTGAAG
TGCGGAGTGGACCAGGCGGGCGTGGTCCGTGTTGGAGACACGGTGTACGC
GTGCGCGTGA Coding sequence (CDS) from alignment at Sc0000193:333140..336049+ >transcript:BL95885_evm3 ID=transcript:BL95885_evm3|Name=transcript:BL95885_evm3|organism=Branchiostoma lanceolatum|type=CDS|length=6888bp|location=Sequence derived from alignment at Sc0000193:333140..336049+ (Branchiostoma lanceolatum)
ATGGACGGTGTGAAGGCAGCGCTCCAATCTAAAGAAGTAGTTATCGCTGT
ACTGACTACTACAGCTGTGATCTCTGCCGGGATAGCCTACCTCCGGTGGC
GGAGGCAACGTAACCGGCACTACGTCCCCGTCGGACATGTGGCTAAAATC
TTCATGTACCCGGTAAAGTGTTGCCGCGGTCTGGAGCTGGGGGAGGCCGT
GCTGACCGAACAAGGTTTGCAGTGTGATGGAGTTATGGACAGACACCTGG
TGATTCTTTATAAGGATCGTTTCTTGGACTCAAGGACGAGTCCCCGTATC
GTCCTGATCTCCCCGCAGTGTGTTGGAGACGGACAGGTGAGGCTGGAGGC
ACCTGGGATGGACCCGCTCACCTTGTCCGCTCCCACGGAAAACGTGATTG
ACGTCAGTATATGGGATATTGGCGGAGACGCTGTGGACTGCGGCCCGGAG
GCTGCCGCCTGGCTGGAGAAGTTCTTCGGGAAGCCGGGCTACAAGCTGGT
CATGTCCACACCGGGAAGTAAGAAGAGACAGACGACGGAACACTGGAGGT
ACAAGCGCTTTGCCAGGCCAGATGACAAGGTGGGGTTCCAGGACCAAACC
GCCTTGCTGCTTACGTCAGAGGCGTCCCTGGACGACCTGAACAACAAGCT
GGTCACTCCTGTAGCCATGCGCAACTTCCGACCCAACATTGTGGTCGCTG
GGAGTGAGCCATTTCAAGAGGACGACTGGCTGCATATGCGAATCGGCCAA
GTGGACATTCGGACAGTTTTACCCTGCAACAGGTGTTTAGTAACAACTAT
CAACCCCGAGACCGGTGTGAAGGATAAGGCGATGGAACCTCTCAAGACGC
TCCAAAGTTACCGCCTTTCCACGAAGAAAAAGTATCAGGGCCTGTTCGCG
CAGACCCCACTCTTCGGGCTGAAGTGCGGAGTGGACCAGGCGGGCGTGGT
CCGTGTTGGAGACACGGTGTACGCGTGCGCGTGAATGGACGGTGTGAAGG
CAGCGCTCCAATCTAAAGAAGTAGTTATCGCTGTACTGACTACTACAGCT
GTGATCTCTGCCGGGATAGCCTACCTCCGGTGGCGGAGGCAACGTAACCG
GCACTACGTCCCCGTCGGACATGTGGCTAAAATCTTCATGTACCCGGTAA
AGTGTTGCCGCGGTCTGGAGCTGGGGGAGGCCGTGCTGACCGAACAAGGT
TTGCAGTGTGATGGAGTTATGGACAGACACCTGGTGATTCTTTATAAGGA
TCGTTTCTTGGACTCAAGGACGAGTCCCCGTATCGTCCTGATCTCCCCGC
AGTGTGTTGGAGACGGACAGGTGAGGCTGGAGGCACCTGGGATGGACCCG
CTCACCTTGTCCGCTCCCACGGAAAACGTGATTGACGTCAGTATATGGGA
TATTGGCGGAGACGCTGTGGACTGCGGCCCGGAGGCTGCCGCCTGGCTGG
AGAAGTTCTTCGGGAAGCCGGGCTACAAGCTGGTCATGTCCACACCGGGA
AGTAAGAAGAGACAGACGACGGAACACTGGAGGTACAAGCGCTTTGCCAG
GCCAGATGACAAGGTGGGGTTCCAGGACCAAACCGCCTTGCTGCTTACGT
CAGAGGCGTCCCTGGACGACCTGAACAACAAGCTGGTCACTCCTGTAGCC
ATGCGCAACTTCCGACCCAACATTGTGGTCGCTGGGAGTGAGCCATTTCA
AGAGGACGACTGGCTGCATATGCGAATCGGCCAAGTGGACATTCGGACAG
TTTTACCCTGCAACAGGTGTTTAGTAACAACTATCAACCCCGAGACCGGT
GTGAAGGATAAGGCGATGGAACCTCTCAAGACGCTCCAAAGTTACCGCCT
TTCCACGAAGAAAAAGTATCAGGGCCTGTTCGCGCAGACCCCACTCTTCG
GGCTGAAGTGCGGAGTGGACCAGGCGGGCGTGGTCCGTGTTGGAGACACG
GTGTACGCGTGCGCGTGAATGGACGGTGTGAAGGCAGCGCTCCAATCTAA
AGAAGTAGTTATCGCTGTACTGACTACTACAGCTGTGATCTCTGCCGGGA
TAGCCTACCTCCGGTGGCGGAGGCAACGTAACCGGCACTACGTCCCCGTC
GGACATGTGGCTAAAATCTTCATGTACCCGGTAAAGTGTTGCCGCGGTCT
GGAGCTGGGGGAGGCCGTGCTGACCGAACAAGGTTTGCAGTGTGATGGAG
TTATGGACAGACACCTGGTGATTCTTTATAAGGATCGTTTCTTGGACTCA
AGGACGAGTCCCCGTATCGTCCTGATCTCCCCGCAGTGTGTTGGAGACGG
ACAGGTGAGGCTGGAGGCACCTGGGATGGACCCGCTCACCTTGTCCGCTC
CCACGGAAAACGTGATTGACGTCAGTATATGGGATATTGGCGGAGACGCT
GTGGACTGCGGCCCGGAGGCTGCCGCCTGGCTGGAGAAGTTCTTCGGGAA
GCCGGGCTACAAGCTGGTCATGTCCACACCGGGAAGTAAGAAGAGACAGA
CGACGGAACACTGGAGGTACAAGCGCTTTGCCAGGCCAGATGACAAGGTG
GGGTTCCAGGACCAAACCGCCTTGCTGCTTACGTCAGAGGCGTCCCTGGA
CGACCTGAACAACAAGCTGGTCACTCCTGTAGCCATGCGCAACTTCCGAC
CCAACATTGTGGTCGCTGGGAGTGAGCCATTTCAAGAGGACGACTGGCTG
CATATGCGAATCGGCCAAGTGGACATTCGGACAGTTTTACCCTGCAACAG
GTGTTTAGTAACAACTATCAACCCCGAGACCGGTGTGAAGGATAAGGCGA
TGGAACCTCTCAAGACGCTCCAAAGTTACCGCCTTTCCACGAAGAAAAAG
TATCAGGGCCTGTTCGCGCAGACCCCACTCTTCGGGCTGAAGTGCGGAGT
GGACCAGGCGGGCGTGGTCCGTGTTGGAGACACGGTGTACGCGTGCGCGT
GAATGGACGGTGTGAAGGCAGCGCTCCAATCTAAAGAAGTAGTTATCGCT
GTACTGACTACTACAGCTGTGATCTCTGCCGGGATAGCCTACCTCCGGTG
GCGGAGGCAACGTAACCGGCACTACGTCCCCGTCGGACATGTGGCTAAAA
TCTTCATGTACCCGGTAAAGTGTTGCCGCGGTCTGGAGCTGGGGGAGGCC
GTGCTGACCGAACAAGGTTTGCAGTGTGATGGAGTTATGGACAGACACCT
GGTGATTCTTTATAAGGATCGTTTCTTGGACTCAAGGACGAGTCCCCGTA
TCGTCCTGATCTCCCCGCAGTGTGTTGGAGACGGACAGGTGAGGCTGGAG
GCACCTGGGATGGACCCGCTCACCTTGTCCGCTCCCACGGAAAACGTGAT
TGACGTCAGTATATGGGATATTGGCGGAGACGCTGTGGACTGCGGCCCGG
AGGCTGCCGCCTGGCTGGAGAAGTTCTTCGGGAAGCCGGGCTACAAGCTG
GTCATGTCCACACCGGGAAGTAAGAAGAGACAGACGACGGAACACTGGAG
GTACAAGCGCTTTGCCAGGCCAGATGACAAGGTGGGGTTCCAGGACCAAA
CCGCCTTGCTGCTTACGTCAGAGGCGTCCCTGGACGACCTGAACAACAAG
CTGGTCACTCCTGTAGCCATGCGCAACTTCCGACCCAACATTGTGGTCGC
TGGGAGTGAGCCATTTCAAGAGGACGACTGGCTGCATATGCGAATCGGCC
AAGTGGACATTCGGACAGTTTTACCCTGCAACAGGTGTTTAGTAACAACT
ATCAACCCCGAGACCGGTGTGAAGGATAAGGCGATGGAACCTCTCAAGAC
GCTCCAAAGTTACCGCCTTTCCACGAAGAAAAAGTATCAGGGCCTGTTCG
CGCAGACCCCACTCTTCGGGCTGAAGTGCGGAGTGGACCAGGCGGGCGTG
GTCCGTGTTGGAGACACGGTGTACGCGTGCGCGTGAATGGACGGTGTGAA
GGCAGCGCTCCAATCTAAAGAAGTAGTTATCGCTGTACTGACTACTACAG
CTGTGATCTCTGCCGGGATAGCCTACCTCCGGTGGCGGAGGCAACGTAAC
CGGCACTACGTCCCCGTCGGACATGTGGCTAAAATCTTCATGTACCCGGT
AAAGTGTTGCCGCGGTCTGGAGCTGGGGGAGGCCGTGCTGACCGAACAAG
GTTTGCAGTGTGATGGAGTTATGGACAGACACCTGGTGATTCTTTATAAG
GATCGTTTCTTGGACTCAAGGACGAGTCCCCGTATCGTCCTGATCTCCCC
GCAGTGTGTTGGAGACGGACAGGTGAGGCTGGAGGCACCTGGGATGGACC
CGCTCACCTTGTCCGCTCCCACGGAAAACGTGATTGACGTCAGTATATGG
GATATTGGCGGAGACGCTGTGGACTGCGGCCCGGAGGCTGCCGCCTGGCT
GGAGAAGTTCTTCGGGAAGCCGGGCTACAAGCTGGTCATGTCCACACCGG
GAAGTAAGAAGAGACAGACGACGGAACACTGGAGGTACAAGCGCTTTGCC
AGGCCAGATGACAAGGTGGGGTTCCAGGACCAAACCGCCTTGCTGCTTAC
GTCAGAGGCGTCCCTGGACGACCTGAACAACAAGCTGGTCACTCCTGTAG
CCATGCGCAACTTCCGACCCAACATTGTGGTCGCTGGGAGTGAGCCATTT
CAAGAGGACGACTGGCTGCATATGCGAATCGGCCAAGTGGACATTCGGAC
AGTTTTACCCTGCAACAGGTGTTTAGTAACAACTATCAACCCCGAGACCG
GTGTGAAGGATAAGGCGATGGAACCTCTCAAGACGCTCCAAAGTTACCGC
CTTTCCACGAAGAAAAAGTATCAGGGCCTGTTCGCGCAGACCCCACTCTT
CGGGCTGAAGTGCGGAGTGGACCAGGCGGGCGTGGTCCGTGTTGGAGACA
CGGTGTACGCGTGCGCGTGAATGGACGGTGTGAAGGCAGCGCTCCAATCT
AAAGAAGTAGTTATCGCTGTACTGACTACTACAGCTGTGATCTCTGCCGG
GATAGCCTACCTCCGGTGGCGGAGGCAACGTAACCGGCACTACGTCCCCG
TCGGACATGTGGCTAAAATCTTCATGTACCCGGTAAAGTGTTGCCGCGGT
CTGGAGCTGGGGGAGGCCGTGCTGACCGAACAAGGTTTGCAGTGTGATGG
AGTTATGGACAGACACCTGGTGATTCTTTATAAGGATCGTTTCTTGGACT
CAAGGACGAGTCCCCGTATCGTCCTGATCTCCCCGCAGTGTGTTGGAGAC
GGACAGGTGAGGCTGGAGGCACCTGGGATGGACCCGCTCACCTTGTCCGC
TCCCACGGAAAACGTGATTGACGTCAGTATATGGGATATTGGCGGAGACG
CTGTGGACTGCGGCCCGGAGGCTGCCGCCTGGCTGGAGAAGTTCTTCGGG
AAGCCGGGCTACAAGCTGGTCATGTCCACACCGGGAAGTAAGAAGAGACA
GACGACGGAACACTGGAGGTACAAGCGCTTTGCCAGGCCAGATGACAAGG
TGGGGTTCCAGGACCAAACCGCCTTGCTGCTTACGTCAGAGGCGTCCCTG
GACGACCTGAACAACAAGCTGGTCACTCCTGTAGCCATGCGCAACTTCCG
ACCCAACATTGTGGTCGCTGGGAGTGAGCCATTTCAAGAGGACGACTGGC
TGCATATGCGAATCGGCCAAGTGGACATTCGGACAGTTTTACCCTGCAAC
AGGTGTTTAGTAACAACTATCAACCCCGAGACCGGTGTGAAGGATAAGGC
GATGGAACCTCTCAAGACGCTCCAAAGTTACCGCCTTTCCACGAAGAAAA
AGTATCAGGGCCTGTTCGCGCAGACCCCACTCTTCGGGCTGAAGTGCGGA
GTGGACCAGGCGGGCGTGGTCCGTGTTGGAGACACGGTGTACGCGTGCGC
GTGAATGGACGGTGTGAAGGCAGCGCTCCAATCTAAAGAAGTAGTTATCG
CTGTACTGACTACTACAGCTGTGATCTCTGCCGGGATAGCCTACCTCCGG
TGGCGGAGGCAACGTAACCGGCACTACGTCCCCGTCGGACATGTGGCTAA
AATCTTCATGTACCCGGTAAAGTGTTGCCGCGGTCTGGAGCTGGGGGAGG
CCGTGCTGACCGAACAAGGTTTGCAGTGTGATGGAGTTATGGACAGACAC
CTGGTGATTCTTTATAAGGATCGTTTCTTGGACTCAAGGACGAGTCCCCG
TATCGTCCTGATCTCCCCGCAGTGTGTTGGAGACGGACAGGTGAGGCTGG
AGGCACCTGGGATGGACCCGCTCACCTTGTCCGCTCCCACGGAAAACGTG
ATTGACGTCAGTATATGGGATATTGGCGGAGACGCTGTGGACTGCGGCCC
GGAGGCTGCCGCCTGGCTGGAGAAGTTCTTCGGGAAGCCGGGCTACAAGC
TGGTCATGTCCACACCGGGAAGTAAGAAGAGACAGACGACGGAACACTGG
AGGTACAAGCGCTTTGCCAGGCCAGATGACAAGGTGGGGTTCCAGGACCA
AACCGCCTTGCTGCTTACGTCAGAGGCGTCCCTGGACGACCTGAACAACA
AGCTGGTCACTCCTGTAGCCATGCGCAACTTCCGACCCAACATTGTGGTC
GCTGGGAGTGAGCCATTTCAAGAGGACGACTGGCTGCATATGCGAATCGG
CCAAGTGGACATTCGGACAGTTTTACCCTGCAACAGGTGTTTAGTAACAA
CTATCAACCCCGAGACCGGTGTGAAGGATAAGGCGATGGAACCTCTCAAG
ACGCTCCAAAGTTACCGCCTTTCCACGAAGAAAAAGTATCAGGGCCTGTT
CGCGCAGACCCCACTCTTCGGGCTGAAGTGCGGAGTGGACCAGGCGGGCG
TGGTCCGTGTTGGAGACACGGTGTACGCGTGCGCGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000193 | genome | Sc0000193:333140..336049 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL95885_evm3 |
| Biotype | protein_coding |
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